Compare commits

..

1 Commits

Author SHA1 Message Date
peterlu14 d550536f4f Revert "Merge remote-tracking branch 'origin/dev/fix_no_data' into release/v1.6.7/scheduler_debug"
This reverts commit 4243a13536, reversing
changes made to 97188abff8.
2022-10-17 16:37:14 +08:00
36 changed files with 1257 additions and 4009 deletions
-1
View File
@@ -7,4 +7,3 @@
/.vscode
/media
python/biopro/sever/_identify.py
*.log
+27 -56
View File
@@ -78,8 +78,6 @@ add ssh.txt in boot folder
###### Install dependencies
sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql npm
sudo apt-get install libatlas-base-dev
sudo apt-get install python3-numpy
###### wiringpi conflict
need to install wiringpi: https://github.com/WiringPi/WiringPi
@@ -96,7 +94,6 @@ git clone https://gitlab.com/wisetop/controller/wisetopdataserver.git
```
cd ~/wisetopdataserver
pip3 install -r requirements.txt
pip3 install SQLAlchemy
```
##### Packages version
```
@@ -158,8 +155,8 @@ reboot
###### Set pi password
```
cd ~
passwd
$cd ~
$passwd
Current password:raspberry
New password:5k6zj454778225
Retype new password:5k6zj454778225
@@ -198,11 +195,11 @@ exit 0
### MQTT broker install
###### 1.Install mosquitto
sudo apt-get install mosquitto mosquitto-clients
$sudo apt-get install mosquitto mosquitto-clients
###### 2.Enable Remote Access
sudo vim /etc/mosquitto/conf.d/default.conf
$sudo vim /etc/mosquitto/conf.d/default.conf
add the code following as:
```
@@ -213,13 +210,13 @@ protocol websockets
allow_anonymous true
```
###### 3.restart mqtt broker
sudo systemctl restart mosquitto
$sudo systemctl restart mosquitto
###### 4.Robust MQTT
create mosquitto_restart.sh
cd ~
sudo vim mosquitto_restart.sh
$cd ~
$sudo vim mosquitto_restart.sh
add the code following as:
@@ -236,16 +233,16 @@ echo "$SERVICE is currently running" >> /home/ubuntu/cron.log
exit 0
```
###### 5.add mosquitto_restart.sh to root routing
sudo chmod +x mosquitto_restart.sh
sudo -i
crontab -e
$sudo chmod +x mosquitto_restart.sh
$sudo -i
$crontab -e
add the code following as:
```
*/5 * * * * /home/pi/mosquitto_restart.sh
```
###### 6.Auto run MQTT broker when when pi-start
sudo vim /etc/rc.local
$sudo vim /etc/rc.local
add the code following as:
```
@@ -254,31 +251,31 @@ sudo nohup systemctl restart mosquitto
### Setting up a Routed Wireless Access Point
###### 1.Install AP and Management Software
sudo apt install hostapd
sudo systemctl unmask hostapd
sudo systemctl enable hostapd
sudo apt install dnsmasq
sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
$sudo apt install hostapd
$sudo systemctl unmask hostapd
$sudo systemctl enable hostapd
$sudo apt install dnsmasq
$sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
###### 2.Set up the Network Router
sudo nano /etc/dhcpcd.conf
$sudo nano /etc/dhcpcd.conf
```
interface wlan0
static ip_address=192.168.2.1/24
nohook wpa_supplicant
```
sudo nano /etc/sysctl.d/routed-ap.conf
$sudo nano /etc/sysctl.d/routed-ap.conf
```
# Enable IPv4 routing
net.ipv4.ip_forward=1
```
sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
sudo netfilter-persistent save
sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
$sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
$sudo netfilter-persistent save
$sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
sudo nano /etc/dnsmasq.conf
$sudo nano /etc/dnsmasq.conf
```
interface=wlan0 # Listening interface
@@ -289,10 +286,10 @@ address=/gw.wlan/192.168.2.1
# Alias for this router
```
###### 3.Ensure Wireless Operation
sudo rfkill unblock wlan
$sudo rfkill unblock wlan
###### 4.Configure the AP Software
sudo nano /etc/hostapd/hostapd.conf
$sudo nano /etc/hostapd/hostapd.conf
```
country_code=TW
@@ -317,13 +314,11 @@ wme_enabled=1
ht_capab=[HT40+][SHORT-GI-40]
```
###### 5.Running the new Wireless AP
sudo systemctl reboot
$sudo systemctl reboot
### Install Apache2
sudo apt install apache2
### Deploy web site
sudo vim /etc/apache2/sites-available/000-default.conf
### Set web site
$sudo vim ./sites-available/000-default.conf
```
<VirtualHost *:8080> #80------>8080
# The ServerName directive sets the request scheme, hostname and port that
@@ -363,27 +358,3 @@ sudo vim /etc/apache2/sites-available/000-default.conf
##### raspberry website document:
> https://www.raspberrypi.org/documentation/configuration/wireless/access-point-routed.md
# ChangeLog
[2022.12.28]
change meta_project_info to project_metas
change project_report to project_reports
alter table project_meta column cycle type string to jsonb
[2022.11.16]
add python package SQLAlchemy
add new column project(int4) in postgresSQL table recording_meta_datas
add new postgresSQL table project_report
add new postgresSQL table meta_project_info
[2022.10.18]
socektTimeout from 1s -> 5s
socketListen from 3 -> 20
[2022.09.30]
add new column cycle(jsonb) in postgresSQL table projects
[2022.9.28]
add python package numpy
+3 -5
View File
@@ -87,8 +87,7 @@ class DataAPI(metaclass=abc.ABCMeta):
def update_device_configuration(self,
device: Union[int, Device],
meta_file: Union[str, Path, RecordingMetaFile],
data_format: Union[AnyStr, DataDecodeFormat],
project_info: str):
data_format: Union[AnyStr, DataDecodeFormat]):
"""set device configuration.
:param device: device ID
@@ -155,8 +154,7 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
def update_device_configuration(self,
device: Union[int, Device],
meta_file: Union[str, Path, RecordingMetaFile],
data_format: Union[AnyStr, DataDecodeFormat],
project_info: str):
data_format: Union[AnyStr, DataDecodeFormat]):
# meta file
if isinstance(meta_file, str):
@@ -188,7 +186,7 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
raise TypeError('not a data decode format : ' + data_format.__class__.__name__)
# send
self.send_command('update_device_configuration', device, meta_file, data_format, project_info)
self.send_command('update_device_configuration', device, meta_file, data_format)
def is_sync(self, device: Union[None, int, Device] = None) -> bool:
if isinstance(device, Device):
-10
View File
@@ -1,10 +0,0 @@
from sqlalchemy import create_engine
# from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.orm import sessionmaker, declarative_base
SQLALCHEMY_DATABASE_URL = "postgresql://biopro:BioProControlBox@127.0.0.1:5432/postgres"
engine = create_engine(SQLALCHEMY_DATABASE_URL)
Session = sessionmaker(bind=engine)
Base = declarative_base()
-60
View File
@@ -1,60 +0,0 @@
from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
from sqlalchemy.sql import select, func
from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
from sqlalchemy.dialects.postgresql import JSONB
from biopro.db.base import Session
from .base import Base
class Collection(Base):
__tablename__ = "collections"
id = Column(Integer, primary_key=True)
name = Column(String(255))
parent = Column(JSONB)
controller_id = Column(Integer)
type = Column(String(255))
description = Column(String(255))
deleted = Column(Boolean)
created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
@classmethod
def create_collection(cls, collection_name, parent):
with Session() as session:
name = cls.check_name_duplicate(collection_name, parent, 0)
collection = Collection(
name = name,
parent = parent,
type= "folder",
)
session.add(collection)
session.commit()
print('a', collection.id)
return collection
@classmethod
def check_name_duplicate(cls, collection_name, parent, n):
with Session() as session:
result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
if result is None:
return cls.generate_name(collection_name, n)
else:
new_num = n + 1
# new_name = f"{collection_name}({new_num})"
return cls.check_name_duplicate(collection_name, parent, new_num)
@classmethod
def generate_name(cls, collection_name, n):
if n==0:
return collection_name
else:
return f"{collection_name}({n})"
@classmethod
def find_collection(cls, collection_name, parent):
with Session() as session:
result = session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
return result
-51
View File
@@ -1,51 +0,0 @@
from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
from sqlalchemy.sql import select, func
from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric, Float, BINARY, LargeBinary
from sqlalchemy.dialects.postgresql import JSONB
from .base import Base, Session
class Device(Base):
__tablename__ = "devices"
id = Column(Integer, primary_key=True)
name = Column(String(255))
mac_address = Column(String(255))
serial_number = Column(String(255))
configuration = Column(JSONB)
library = Column(String(255))
library_version = Column(String(255))
device_version = Column(String(255))
type = Column(String(255))
battery = Column(Integer)
temperature = Column(Float)
auto_connect = Column(Boolean)
connect_priority = Column(Integer)
connect_time = Column(BigInteger)
parameter_set = Column(JSONB)
running = Column(Boolean)
calibration = Column(LargeBinary)
calibration_version = Column(Integer, default=-1)
user_auth = Column(JSONB)
deleted = Column(Boolean)
created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
@classmethod
def update_device(cls, device, options):
with Session() as session:
result = session.query(Device).filter(Device.mac_address == device['mac_address']).first()
for key, value in options.items():
setattr(result, key, value)
session.commit()
@classmethod
def get_device(cls, device):
with Session() as session:
result = session.query(Device).filter(Device.mac_address == device['mac_address']).first()
return result
# def __repr__(self):
# return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"
-24
View File
@@ -1,24 +0,0 @@
from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
from sqlalchemy.sql import select, func
from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
from sqlalchemy.dialects.postgresql import JSONB
from .base import Base
class Project(Base):
__tablename__ = "project"
id = Column(Integer, primary_key=True)
name = Column(String)
desc = Column(String)
task = Column(JSONB)
cycle = Column(JSONB)
device = Column(JSONB)
uuid = Column(String(36))
user_auth = Column(JSONB)
deleted = Column(Boolean, default = False)
created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
# def __repr__(self):
# return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"
-29
View File
@@ -1,29 +0,0 @@
from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
from sqlalchemy.sql import select, func
from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
from sqlalchemy.dialects.postgresql import JSONB
from .base import Base, Session
class MetaProjectInfo(Base):
__tablename__ = "project_metas"
id = Column(Integer, primary_key=True)
project = Column(String(36))
cycle = Column(JSONB)
task = Column(JSONB)
serial_number = Column(Integer)
deleted = Column(Boolean, default = False)
created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
@classmethod
def create_project_meta(cls, project):
with Session() as session:
project_meta = MetaProjectInfo(project = project['project'], cycle= project['cycle'], task=project['task'], serial_number=int(project['serial_number']))
session.add(project_meta)
session.commit()
return project_meta.id
# def __repr__(self):
# return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"
-24
View File
@@ -1,24 +0,0 @@
from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
from sqlalchemy.sql import select, func
from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
from sqlalchemy.dialects.postgresql import JSONB
from .base import Base
class ProjectReport(Base):
__tablename__ = "project_reports"
id = Column(Integer, primary_key=True)
name = Column(String)
desc = Column(String)
task = Column(JSONB)
cycle = Column(JSONB)
device = Column(JSONB)
uuid = Column(String(36))
user_auth = Column(JSONB)
deleted = Column(Boolean, default = False)
created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
# def __repr__(self):
# return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"
+377 -313
View File
@@ -350,7 +350,6 @@ class CC2650Device(Device):
self._recording_file_name: str = 'recording_data'
self._coeff: bytes = b''
self._device_version = ""
self._cali_version = -1
@property
def device_id(self) -> int:
@@ -433,12 +432,12 @@ class CC2650Device(Device):
if length == 1 and instruction[0] < 0:
return struct.pack('2B1b',
(ins_type & 0xF0) | (self.device_id & 0x0F),
(ins_oper & 0xFF),
(ins_oper & 0xF0) | (length & 0x0F),
*instruction)
return struct.pack('%dB' % (length + 2),
(ins_type & 0xF0) | (self.device_id & 0x0F),
(ins_oper & 0xFF),
(ins_oper & 0xF0) | (length & 0x0F),
*instruction)
def _decode_data(self, ins_oper: int, data: bytes) -> bytes:
@@ -470,7 +469,6 @@ class CC2650Device(Device):
# receive
data = self._master.read_characteristic(self.device_id, CC2650MasterDevice.RETURN_HANDLE)
data = self._decode_data(DeviceInstruction.CIS_VERSION, data)
print('data:',list(data))
except SendInstructionTimeoutError:
self._master.log_warn('device', self.device_id, 'update_device_version no response')
@@ -479,14 +477,18 @@ class CC2650Device(Device):
else:
if data is not None and len(data) > 0:
year = struct.unpack('<B', data[2:3])[0]
month = struct.unpack('<B', data[3:4])[0]
day = struct.unpack('<B', data[4:5])[0]
hour = struct.unpack('<B', data[5:6])[0]
minute = struct.unpack('<B', data[6:7])[0]
year = struct.unpack('<B', data[0:1])[0]
month = struct.unpack('<B', data[1:2])[0]
day = struct.unpack('<B', data[2:3])[0]
hour = struct.unpack('<B', data[3:4])[0]
minute = struct.unpack('<B', data[4:5])[0]
mac1 = struct.unpack('<B', data[5:6])[0]
mac2 = struct.unpack('<B', data[6:7])[0]
mac1 = "%02X" % mac1
mac2 = "%02X" % mac2
self._device_version = str(year) + '/' + str(month) + '/' + str(day) + " " + str(hour) + ":" + str(
minute)
minute) + " | " + str(mac1) + ":" + str(mac2)
@property
def battery(self) -> int:
@@ -535,7 +537,7 @@ class CC2650Device(Device):
else:
if data is not None and len(data) > 2 :
battery = struct.unpack('<H', data[2:4])[0]
battery = struct.unpack('<H', data[1:3])[0]
if battery is not None:
self._battery = battery
@@ -547,39 +549,6 @@ class CC2650Device(Device):
self.update_calibration_info(device_type)
return self._coeff
def _check_crc(self, data):
data_chk_sum = data[-1]
# print('data:', list(data), 'data_chk_sum:', data_chk_sum)
# print('data[0:-1]:', list(data[0:-1]), 'check_sum:', sum(data[0:-1]) & 0b11111111)
if data_chk_sum == sum(data[0:-1]) & 0b11111111:
return True
return False
def update_cali_version(self) -> bool:
for _ in range(5):
try:
code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, 0)
self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
except SendInstructionTimeoutError:
self._master.log_warn('device', self.device_id, 'update cali version error')
return False
except RuntimeError:
self._master.log_warn('device', self.device_id, 'update cali version error')
return False
else:
version = self._master.read_characteristic(self.device_id,CC2650MasterDevice.RETURN_HANDLE)
if self._check_crc(version):
self._cali_version = struct.unpack('<H', version[2:4])[0]
print('self._cali_version=', self._cali_version)
return True
self._master.log_warn('device', self.device_id, 'update cali version error')
return False
def update_calibration_info(self, device_type: str):
""" get device calibration info """
@@ -602,6 +571,20 @@ class CC2650Device(Device):
elif device_type == 'TDC4VC':
i = 0
request_times = 0
# neulive 2.1 (only support ch1~ch8)
# try:
# # send
# code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, 0)
# self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
# # receive
# data = self._master.read_characteristic(self.device_id, CC2650MasterDevice.RETURN_HANDLE)
#
# coeff.append(self._decode_data(DeviceInstruction.CIS_CALI, data))
# except SendInstructionTimeoutError:
# self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
# except RuntimeError:
# self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
while i < 4:
try:
# print('i', i)
@@ -677,34 +660,43 @@ class CC2650Device(Device):
break
elif device_type == 'EISZeroOne':
i = 1
while i <= 24:
for _ in range(5):
try:
# send
code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, i)
self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
i = 0
request_times = 0
while i < 7:
try:
# send
code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, i)
self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
except SerialTimeoutException:
self._master.log_warn('device', self.device_id, 'send update_calibration_info instruction fail')
continue
sleep(0.1)
# receive
data = self._master.read_characteristic(self.device_id,
CC2650MasterDevice.RETURN_HANDLE)
coeff.append(self._decode_data(DeviceInstruction.CIS_CALI, data))
except SendInstructionTimeoutError as e:
print(e)
self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
raise BaseException
except RuntimeError as e:
print(e)
self._master.log_warn('device', self.device_id, 'update_calibration_info no response - 2')
request_times += 1
if request_times > 3:
self._master.reset(self.device_id)
break
else:
# print('data success')
if len(data) > 0:
i += 1
else:
try:
# receive
data = self._master.read_characteristic(self.device_id,
CC2650MasterDevice.RETURN_HANDLE)
except RecvTimeout:
self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
request_times += 1
if request_times > 3:
self._master.reset(self.device_id)
break
else:
if self._check_crc(data) and data is not None:
coeff.append(self._decode_data(DeviceInstruction.CIS_CALI, data))
i += 1
else:
self._master.log_warn('device', self.device_id, 'update_calibration_info crc wrong')
continue
else:
# default: neulive 2.1
for i in range(1):
@@ -1958,6 +1950,120 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
"""initialize cc2650 (master)"""
pass
def scan_send_ins(self):
# send scan command
try:
print(':: scan_send_ins ::', self.CC2650_COMMAND_LEN, 3, 0, 0)
self._cc2650.send(self.CC2650_COMMAND_LEN, 3, 0, 0)
except SerialTimeoutException as e:
raise RecvTimeout('send scan fail') from e
else:
# wait scanning
# sleep(2)
clean_buf = self._cc2650.receive_timeout("20B", timeout=3)
print("clean_buf = ", clean_buf)
# def cc2650_uart_irq(self):
# uart_irq = self.get_uart_irq_pin()
# uart_irq.output(False)
# sleep(0.001)
# uart_irq.output(True)
@synchronized
def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
self._found = found = []
self._found_with_id = []
hdr_BPHS = [66, 80, 72, 83]
scan_response: Union[Optional[tuple], Any] = None
# build scan instruction
scan_ins = bytearray()
scan_ins.append(3) #scan instruction
scan_ins.append(1) #length
scan_ins.append(0xF1)
# print('send_scan', bytes(scan_ins))
self._cc2650.send("bytes", bytes(scan_ins))
try:
scan_response = self._cc2650.recv_uart(timeout)
except RecvTimeout:
# self.reset_internal()
# self.reset_hardware()
# self._interface.flush()
return False
# instruction format:
# ins[0]: get_scan_response = 0x04
# ins[1]: number of scanned device=0; a certain device = device_id (could be 1~8)
# ins[2]: addr=MAC=1, localName=2, company_code=3, version_info=4, battery_info=5, all_info=6;
# attr_length=0, e.g. len(addr)=6, len(company_code)=4
local_mac = None
local_cc = None
local_ver = None
local_bat = None
local_name = None
local_addr_type = None
# get device attribute length
attr_length = [6, 4, 6, 5, 20]
index = 0
local_mac = get_device_mac_in_address_format(scan_response[index:index + 6])
index = index + 6
# print("local_mac = ", hex(local_mac[0]), hex(local_mac[1]),
# hex(local_mac[2]), hex(local_mac[3]),
# hex(local_mac[4]), hex(local_mac[5]))
local_cc = get_device_company_code(scan_response[index:index + 4])
index = index + 4
# print("local_cc = ", local_cc)
local_ver = scan_response[index:index + 6]
index = index + 6
# print("local_ver = ", local_ver)
local_bat = get_device_battery_info(scan_response[index:index + 5])
index = index + 5
# print("local_bat = ", local_bat)
local_name = get_device_name_in_string_format(list(scan_response[index:index + 20]))
index = index + 20
# print("local_name = ", local_name)
# addr type is don't care in BMD380
print('scan_response:', list(scan_response))
local_addr_type = int(scan_response[index:index + 1][0])
# local_addr_type = 0xFF
index = index + 1
# print("local_addr_type = ", local_addr_type)
response = is_headstage_device_central_version(local_mac,
local_addr_type,
local_name,
local_cc,
local_ver,
local_bat)
if response is not None:
self.log_info('found', address_str(response.mac_address), response.serial_number)
self._interface.flush_input()
# apppend into db
devicesList = DeviceAPI.getByMac(address_str(response.mac_address))
if devicesList is not None:
if len(devicesList) == 0:
DeviceAPI.create(response.device_name, local_ver, address_str(response.mac_address))
found.append(response)
# print('scan_done_found', found)
self._found_with_id.append((response, 0 + 1))
callback(response)
return True
def decode_uart_preamble(self, raw_uart: tuple, expect_ret_len: int = 0) -> Optional[list]:
# print("decode_uart_preamble: raw_uart = ", raw_uart)
if raw_uart is None:
@@ -1984,144 +2090,34 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
return self._found
def check_mem_survive(self) -> Optional[CC2650Device]:
chk_mem_response = None
ack = []
ins = bytearray()
ins.append(0x0A)
ins.append(0x01) #length
ins.append(10)
ins.append(1) #length
ins.append(0xF1)
self._interface.flush_input()
# print('ins', list(ins))
try:
self.log_verbose('[CC2650]', 'check_mem_survive att_write','0x'+str.upper(ins.hex()))
self._cc2650.send("bytes", bytes(ins))
except SerialTimeoutException:
self.log_verbose('[CC2650]', 'check_mem_survive send fail')
except SerialTimeoutException as e:
raise RecvTimeout('device CC2650 check_mem_survive timeout') from e
else:
try:
chk_mem_response = self._cc2650.recv_uart(0.001)
ack = self._cc2650.recv_uart(0.001)
except RecvTimeout:
self.log_verbose('[CC2650]', 'check_mem_survive response timeout, no memory board')
self.log_info("no memory board")
if chk_mem_response is None:
return False
# else:
# print('ack=', ack)
pack_len = chk_mem_response[0]
mem_ack = chk_mem_response[1:pack_len+1]
if mem_ack == [3]:
chk_mem_response_hex = ''.join(format(i, '02X') for i in chk_mem_response)
self.log_verbose('[CC2650]', 'check_mem_survive success', '0x'+chk_mem_response_hex)
if ack == [3]:
return True
return False
@synchronized
def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
self._found = found = []
self._found_with_id = []
scan_response = None
ins = bytearray()
ins.append(0x03)
ins.append(0x01) #length
ins.append(0xF1)
self._interface.flush_input()
try:
self.log_verbose('[CC2650]', 'scan_callback att_write','0x'+str.upper(ins.hex()))
self._cc2650.send("bytes", bytes(ins))
except SerialTimeoutException:
self.log_verbose('[CC2650]', 'scan_callback send fail')
else:
try:
scan_response = self._cc2650.recv_uart(0.01)
except RecvTimeout:
self.log_verbose('[CC2650]', 'scan_callback response timeout, no device')
return False
if scan_response is None:
return False
scan_response_hex = ''.join(format(i, '02X') for i in scan_response)
self.log_verbose('[CC2650]', 'scan_callback success', '0x'+scan_response_hex)
if len(scan_response) <= 2:
print('******************************************************************')
print('******************************************************************')
print('******************************************************************')
print('******************************************************************')
print('****need to fix, len(scan) <= 2')
print()
return False
pack_len = scan_response[0]
device_info_pkg = scan_response[1:pack_len+1]
# instruction format:
# ins[0]: get_scan_response = 0x04
# ins[1]: number of scanned device=0; a certain device = device_id (could be 1~8)
# ins[2]: addr=MAC=1, localName=2, company_code=3, version_info=4, battery_info=5, all_info=6;
# attr_length=0, e.g. len(addr)=6, len(company_code)=4
local_mac = None
local_cc = None
local_ver = None
local_bat = None
local_name = None
local_addr_type = None
# get device attribute length
attr_length = [6, 4, 6, 5, 20]
index = 0
local_mac = get_device_mac_in_address_format(device_info_pkg[index:index + 6])
index = index + 6
local_cc = get_device_company_code(device_info_pkg[index:index + 4])
index = index + 4
local_ver = device_info_pkg[index:index + 6]
index = index + 6
local_bat = get_device_battery_info(device_info_pkg[index:index + 5])
index = index + 5
local_name = get_device_name_in_string_format(list(device_info_pkg[index:index + 20]))
index = index + 20
local_addr_type = int(device_info_pkg[index:index + 1][0])
index = index + 1
response = is_headstage_device_central_version(local_mac,
local_addr_type,
local_name,
local_cc,
local_ver,
local_bat)
if response is not None:
self.log_info('found', address_str(response.mac_address), response.serial_number)
self._interface.flush_input()
# apppend into db
devicesList = DeviceAPI.getByMac(address_str(response.mac_address))
if devicesList is not None:
if len(devicesList) == 0:
DeviceAPI.create(response.device_name, local_ver, address_str(response.mac_address))
found.append(response)
# print('scan_done_found', found)
self._found_with_id.append((response, 0 + 1))
callback(response)
return True
@synchronized
def connect(self, response: DeviceResponseInfo, direct_connect: bool = False) -> Optional[CC2650Device]:
if self._handle is not None:
@@ -2131,163 +2127,225 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
addr_type = response.addr_type
address_s = cc2650.address_str(address)
connect_response = None
ins = bytearray()
self.log_info(DEVICE_CONNECTING, address_s)
ins.append(0x05)
ins.append(0x08) #length
ins.append(addr_type)
ins.append(address[0])
ins.append(address[1])
ins.append(address[2])
ins.append(address[3])
ins.append(address[4])
ins.append(address[5])
ins.append(0xF1)
self._interface.flush_input()
connect_ins = bytearray()
connect_ins.append(5)
connect_ins.append(8) #length
connect_ins.append(addr_type)
connect_ins.append(address[0])
connect_ins.append(address[1])
connect_ins.append(address[2])
connect_ins.append(address[3])
connect_ins.append(address[4])
connect_ins.append(address[5])
connect_ins.append(0xF1)
for retry in range(5):
connected = False
# send connect command
if direct_connect is True:
# send device mac and addrType
try:
self.log_verbose('[CC2650]', 'connect att_write', '0x'+str.upper(ins.hex()))
self._cc2650.send("bytes", bytes(ins))
self._cc2650.send("bytes", bytes(connect_ins))
except RecvTimeout:
self.log_verbose('[CC2650]', 'connect send fail')
continue
except SerialTimeoutException as e:
raise RecvTimeout('device CC2650 connect fail') from e
return None
else:
# connection establish done?
for retry_recv_ack in range(10):
try:
connect_response = self._cc2650.recv_uart(2)
print('!!connect_response:', list(connect_response))
con_done = self._cc2650.recv_uart(timeout = 0.5)
# print("con_done = ", con_done)
except RecvTimeout:
self.log_verbose('[CC2650]', 'connect response timeout')
if retry < 5:
self.log_verbose('[CC2650]', 'connect retry')
continue
else:
self.log_info("recv connection timeout, retry... ")
continue
# is the ack valid?
if con_done is None:
continue
elif con_done[0] is 46 and \
con_done[1] is 80 and \
con_done[2] is 48 and \
con_done[3] is 4:
connected = True
break
else:
for dev in self._found:
if dev.mac_address == address:
if connect_response is None:
return False
# send device mac and addrType
try:
# print('send_connect',bytes(connect_ins))
self._cc2650.send("bytes", bytes(connect_ins))
pack_len = connect_response[0]
connect_ack = connect_response[1:pack_len+1]
if connect_ack == [3]:
connect_response_hex = ''.join(format(i, '02X') for i in connect_response)
self.log_verbose('[CC2650]', 'connect success', '0x'+connect_response_hex)
# CC2650Device(device_id, master, scan_response) is a slave device
# device_id is don't care, because it will be overwrite later
dont_care = 0
self._device = ret = CC2650Device(device_id=dont_care, master=self, response_info=response)
self.log_verbose('[CC2650]', DEVICE_CONNECTED, address_s)
return ret
self.log_verbose('[CC2650]', 'connect fail')
return False
except SerialTimeoutException as e:
raise RecvTimeout('device CC2650 connect fail') from e
else:
sleep(2)
# connection establish done?
for retry_recv_ack in range(5):
self._cc2650.send("bytes", bytes((0, 0, 0, 0)))
try:
con_done = self._cc2650.recv_uart(timeout = 0.1)
except RecvTimeout:
self.log_info("recv connection timeout, retry... ")
continue
# is the ack valid?
if con_done is None:
continue
elif con_done[0] is 46 and \
con_done[1] is 80 and \
con_done[2] is 48 and \
con_done[3] is 4:
connected = True
# print('con_done=', con_done)
break
else:
continue
# if select device is invalid or connect failed
self._interface.flush_input()
if connected is False:
if direct_connect is True:
self.reset_internal()
self.reset_hardware()
self._interface.flush()
return None
# CC2650Device(device_id, master, scan_response) is a slave device
# device_id is don't care, because it will be overwrite later
dont_care = 0
self._device = ret = CC2650Device(device_id=dont_care, master=self, response_info=response)
self.log_info(DEVICE_CONNECTED, address_s)
sleep(0.5)
print('ret',ret)
return ret
@synchronized
def disconnect(self, device: int, force=False) -> bool:
self.log_info(DEVICE_DISCONNECTING, device)
ins = bytearray()
ins.append(0x08)
ins.append(0x01) #length
ins.append(8)
ins.append(1) #length
ins.append(0xF1)
self._interface.flush_input()
for _ in range(5):
try:
self.log_verbose('[CC2650]', 'disconnect att_write','0x'+str.upper(ins.hex()))
self._cc2650.send("bytes", bytes(ins))
except SerialTimeoutException:
self.log_verbose('[CC2650]', 'disconnect send fail')
continue
else:
self.reset_internal()
self.reset_hardware()
self.log_verbose('[CC2650]', 'disconnect success')
return True
self.log_verbose('[CC2650]', 'disconnect fail')
return False
@synchronized
def write_characteristic(self, device: int, handle: int, data: bytes) -> bool:
write_response = None
ins = bytearray()
ins.append(0x06)
ins.append(len(data)+2) #length = handle + C0C0XXXX(data len) + F1
ins.append(handle)
ins.extend(data)
ins.append(0xF1)
self._interface.flush_input()
try:
self.log_verbose('[CC2650]', 'write_characteristic', device, str(hex(handle).upper()))
self.log_verbose('[CC2650]', 'write_characteristic att_write','0x'+str.upper(ins.hex()))
# print('send_disconnect',bytes(ins))
self._cc2650.send("bytes", bytes(ins))
except SerialTimeoutException:
self.log_verbose('[CC2650]', 'write_characteristic send fail')
except RecvTimeout:
self.log_warn('disconnect time out')
return False
except RuntimeError as e:
self.log_warn('suppressed error', str(e))
return False
else:
try:
write_response = self._cc2650.recv_uart(0.5)
except RecvTimeout:
self.log_verbose('[CC2650]', 'write_characteristic response timeout')
if write_response is None:
return False
pack_len = write_response[0]
write_ack = write_response[1:pack_len+1]
if write_ack == [3]:
write_response_hex = ''.join(format(i, '02X') for i in write_response)
self.log_verbose('[CC2650]', 'write_characteristic success', '0x'+write_response_hex)
sleep(0.01)
return True
self.log_verbose('[CC2650]', 'write_characteristic fail')
return False
finally:
self.log_info(DEVICE_DISCONNECTED, device)
# reset single 2650 after disconnected
self.reset_internal()
self.reset_hardware()
self._interface.flush()
@synchronized
def read_characteristic(self, device: int, handle: int) -> Optional[bytes]:
read_response = None
ins = bytearray()
ins.append(0x07)
ins.append(0x02) #length
# print("read_characteristic, expect_data_length = ", expect_data_length)
ret = None
ins = bytearray()
ins.append(7)
ins.append(2) #length
ins.append(handle)
ins.append(0xF1)
self._interface.flush_input()
for _ in range(2):
try:
# print('send_read',bytes(ins))
self._cc2650.send("bytes", bytes(ins))
except SerialTimeoutException:
raise RecvTimeout('device CC2650 send read_characteristic fail')
try:
ret = self._cc2650.recv_uart(timeout = 2)
except Exception as e2:
raise RecvTimeout()
else:
# print("======== read ret = ", ret)
self._interface.flush_input()
# try:
# ret = self._cc2650.recv_uart(timeout = 1)
# except Exception as e2:
# raise RecvTimeout()
# else:
# # print("read_characteristic ret = ", ret)
# pass
if ret is None:
return None
return bytes(ret)
@synchronized
def write_characteristic(self, device: int, handle: int, data: bytes):
# print("device", device)
# print("handle", handle)
# print("data", data.hex())
# self.log_info('reset')
self.log_verbose('write_characteristic', device, handle)
self.log_verbose('[CC2650]', 'att_write', str.upper(data.hex()))
ack = None
ret = None
data_array = bytearray()
data_array.append(6)
data_array.append(len(data)+2) #length
data_array.append(handle)
data_array.extend(data)
data_array.append(0xF1)
try:
self.log_verbose('[CC2650]', 'read_characteristic', device, str(hex(handle).upper()))
self.log_verbose('[CC2650]', 'read_characteristic att_write','0x'+str.upper(ins.hex()))
self._cc2650.send("bytes", bytes(ins))
self._cc2650.send("bytes", bytes(data_array))
# print('send_write',bytes(data_array))
except SerialTimeoutException:
self.log_verbose('[CC2650]', 'read_characteristic send fail')
except SerialTimeoutException as e:
raise RecvTimeout('device CC2650 send instruction fail') from e
# read error code
try:
ret = self._cc2650.recv_uart()
# print("_______ write ack = ", ret)
except Exception as e2:
pass
else:
try:
read_response = self._cc2650.recv_uart(1)
pass
except RecvTimeout:
self.log_verbose('[CC2650]', 'read_characteristic response timeout')
if read_response is None:
return None
read_response_hex = ''.join(format(i, '02X') for i in read_response)
self.log_verbose('[CC2650]', 'read_characteristic success', '0x'+read_response_hex)
return bytes(read_response)
self._interface.flush_input()
self._interface.flush_output()
def set_notify(self, device: Union[int, Device], enable: bool):
if isinstance(device, CompletedDevice):
@@ -2388,6 +2446,7 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
self._cc2650_log_level = self.log_level
def read_characteristic(self, device: int, handle: int) -> Optional[bytes]:
self.log_verbose('read_characteristic', device, '0x%02X' % handle)
master = self._cc2650[device]
@@ -2445,6 +2504,11 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
self._interface.flush()
self._selector.select(device_id)
# self._mem_selector.select(device_id)
# print("multiMaster selector = ", device_id)
# print("\n")
# device._notify_flag = enable
try:
master.write_characteristic(device_id, self.NOTIFY_HANDLE, value)
except SendInstructionTimeoutError:
+12 -23
View File
@@ -574,23 +574,20 @@ class DeviceManager(MasterDevice, Synchronized):
:param device: device ID or response info
:return: CompletedDevice, None if not found.
"""
try:
if isinstance(device, int):
for slave in self._device:
if slave.device_id == device:
return slave
if isinstance(device, int):
for slave in self._device:
if slave.device_id == device:
return slave
elif isinstance(device, str):
for slave in self._device:
if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
return slave
elif isinstance(device, str):
for slave in self._device:
if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
return slave
elif isinstance(device, DeviceInfo):
for slave in self._device:
if device.match(slave):
return slave
except BaseException as e:
self.log_error('device not found', str(device))
elif isinstance(device, DeviceInfo):
for slave in self._device:
if device.match(slave):
return slave
return None
@@ -832,9 +829,6 @@ class DeviceManager(MasterDevice, Synchronized):
elif func == InternalInstruction.PREDEFINED_DISABLE_CACHE:
self._device_disable_cache(device, *para)
elif func == InternalInstruction.PREDEFINED_IDLE:
self._idle(device, *para)
elif isinstance(device, DebugDevice):
if func == InternalInstruction.PREDEFINED_NOTIFY:
@@ -854,11 +848,6 @@ class DeviceManager(MasterDevice, Synchronized):
InternalInstruction.PREDEFINED_DATA_FORMAT,
f)
def _idle(self, device: Device, expr: AnyStr):
self._handler.device_internal_command(device.device_id,
InternalInstruction.PREDEFINED_IDLE,
None)
def _device_data_format_cali(self, device: Device, expr: str, cali: bytes = None):
if cali is None:
cali = device.calibration_info(expr)
+167 -345
View File
@@ -1,7 +1,6 @@
import abc
import struct
import math
import numpy
from typing import Optional, TypeVar, Generic, Tuple, Dict, List, AnyStr
from datetime import datetime
@@ -884,54 +883,20 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
def decode(self, data: bytes) -> Optional[RecordingData]:
if len(data) < 18:
return None
#/* Elite Notify data:
# * +--------+----------+---------+---------+---------+-----------+-----------------+
# * | id(1B) | time(4B) | ch1(4B) | ch2(4B) | ch3(4B) | cycle(2B) | finish_flag(1B) |
# * | bat(4B) | notify#(1B) | ch4(4B) | ch5(4B) | ch6(4B) | __(3B) |
# * +---------+-------------+---------+---------+---------+--------+
# */
#/*
# * EliteADCControl(): use ADC plot, and send what data to controller
# * +---------------------------+-----------+-----------+-----------+-----------+-----------+
# * | MODE | ch1 | ch2 | ch3 | cycle | ch4 |
# * +---------------------------+-----------+-----------+-----------+-----------+-----------+
# * | CURVE_IV | Iin | Vout | Vin | | Vmon |
# * | CURVE_IV_CY | Iin | Vout | Vin | v | Vmon |
# * | CURVE_VO | Iin | Vout | Vin | | Vmon |
# * | CURVE_RT | Iin | Vout | R | | Vmon |
# * | CURVE_VT | Iin | Vin | | | |
# * | CURVE_IT | Iin | Vin | Vout | | Vmon |
# * | CURVE_CC | Iin | Vin | Vout | | Vmon |
# * | CURVE_CP | Iin | Vout-Vin | Vout | | Vmon |
# * | CURVE_CV | Iin | Vout-Vin | Vout | v | Vmon |
# * | CURVE_LSV | Iin | Vout-Vin | Vout | | Vmon |
# * | CURVE_CA | Iin | Vout-Vin | Vout | | Vmon |
# * | CURVE_OCP | Iin | Vmon-Vin | Vin | | Vmon |
# * | CURVE_UNI_PULSE | pul1_Iin | pul2_Iin | | | |
# * | CURVE_DPV | c1&c2_avg | Vout-Vin | Vout | | Vmon |
# * | CURVE_DPV_SMPRATE | Iin | Vout-Vin | Vout | | Vmon |
# * | CURVE_DPV_ADVANCE | c1&c2_avg | Vout-Vin | Vout | | Vmon |
# * | CURVE_DPV_ADVANCE_SMPRATE | Iin | Vout-Vin | Vout | | Vmon |
# * +---------------------------+-----------+-----------+-----------+-----------+-----------+
# *
# * ps. c1_avg = pul1_Iin
# * ps. c2_avg = pul2_Iin
# */
voltage = 0
mem_cnt = data[1]
time_stamp: float = struct.unpack('<I', data[1+3:5+3])[0]
ch1 = struct.unpack('<i', data[5+3:9+3])[0] # unit: nA
ch2 = struct.unpack('<i', data[9+3:13+3])[0] # unit: uV
ch3 = struct.unpack('<i', data[13+3:17+3])[0] # unit: mOm
time_stamp: float = struct.unpack('<I', data[4:8])[0] # unit: ms 0x18030000
current = struct.unpack('<i', data[8:12])[0] # unit: nA
voltage = struct.unpack('<i', data[12:16])[0] # unit: uV
impedance = struct.unpack('<i', data[16:20])[0] # unit: mOm
cycle_number = struct.unpack('<H', data[17+3:19+3])[0]
finish_mode_falg = data[19+3]
battery = struct.unpack('<i', data[20+3:24+3])[0]
elite_notify_times = data[24+3]
ch4 = struct.unpack('<i', data[25+3:29+3])[0]
ch5 = struct.unpack('<i', data[29+3:33+3])[0]
ch6 = struct.unpack('<i', data[33+3:37+3])[0]
cycle_number = struct.unpack('<H', data[20:22])[0]
finish_mode_falg = data[22]
battery = struct.unpack('<i', data[23:27])[0]
elite_notify_times = data[27]
notify_one = struct.unpack('<i', data[28:32])[0]
notify_two = struct.unpack('<i', data[32:36])[0]
notify_three = struct.unpack('<i', data[36:40])[0]
# self._show_data = True
mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
@@ -958,29 +923,25 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
else:
if self._show_data:
print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
'|', ch1, '|', ch2, '|', ch3, '|', cycle_number,
'|', ch4, '|', ch5, '|', ch6,
'|', finishMode, '@', str(self.device), flush = True)
'|', current, '|', voltage, '|', impedance, '|', cycle_number,
'|', notify_one, '|', notify_two, '|', notify_three,
'|', finishMode, '@', str(self.device))
# print('|', '{:10}'.format(time_stamp),
# '|', '{:4}'.format(delta),
# '|', '{:10}'.format(int(time_stamp * 1000 / 2)), #[usec]
# '|', '{:10}'.format(ch1), #[nA]
# '|', '{:10}'.format(ch2), #[uV]
# '|', '{:10}'.format(ch3),
# '|', '{:5}'.format(cycle_number),
# '|', '{:10}'.format(ch4), #Voutin[uV]
# '|', '{:10}'.format(ch5),
# '|', '{:10}'.format(ch6),
# '|', '{:5}'.format(battery), #[mV]
# '|', '{:4}'.format(elite_notify_times),
# '|', '{:1}'.format(finishMode),
# '@', str(self.device), '|', flush = True)
# print('|', '{:10}'.format(time_stamp),
# '|', '{:4}'.format(delta),
# '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
# '|', '{:10}'.format(current),
# '|', '{:10}'.format(voltage),
# '|', '{:10}'.format(impedance),
# '|', '{:5}'.format(cycle_number),
# '|', '{:1}'.format(finishMode),
# '@', str(self.device), '|')
# print('|', '{:5}'.format(mem_wrong_information),
# '|', '{:2}'.format(ram_num),
# '|', '{:2}'.format(broken_flag),
# '@', str(self.device), '|')
# print('|', '{:5}'.format(mem_wrong_information),
# '|', '{:2}'.format(ram_num),
# '|', '{:2}'.format(broken_flag),
# '@', str(self.device), '|')
pass
if finishMode == True:
print("finishMode full data:", list(data), datetime.now())
@@ -989,13 +950,13 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
self._mode_stop = 0
ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
ret.append_data(0, ch1)
ret.append_data(1, ch2)
ret.append_data(2, ch3)
ret.append_data(0, current)
ret.append_data(1, voltage)
ret.append_data(2, impedance)
ret.append_data(3, cycle_number)
ret.append_data(4, ch4)
ret.append_data(5, ch5)
ret.append_data(6, ch6)
ret.append_data(4, notify_one)
ret.append_data(5, notify_two)
ret.append_data(6, notify_three)
# ret.append_data(4, battery)
# ret.append_data(5, elite_notify_times)
# ret.append_data(6, mem_cnt)
@@ -1383,9 +1344,9 @@ class EISZeroOneDataDecoder(RecDataDecoder):
__slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
'_total_time_stamp', '_mode', '_cycle_start_time',
'_mode_stop', '_last_time_stamp', '_last_delta',
'_cali_package', 'cali_coeff', '_ac_amp', '_mode',
'_last_phase', '_first_phase_flag', '_show_data')
'_mode_stop', '_last_time_stamp', '_last_delta', '_cali_coeff',
'cali_coeff', '_ac_amp', '_mode', '_freq_start', '_freq_stop',
'_freq_direction', '_last_phase', '_first_phase_flag', '_show_data')
def __init__(self, cali_coeff: bytes = None):
super().__init__()
@@ -1398,234 +1359,88 @@ class EISZeroOneDataDecoder(RecDataDecoder):
self._mode_stop = 0
self._cycle_start_time = []
self._ac_amp: int = 0
self._mode: int = 0
self._freq_start: int = 0
self._freq_stop: int = 0
self._freq_direction = 0
self._last_phase = 0
self._first_phase_flag = 1
self._cali_package: Optional[bytes] = None
self._cali_coeff: Optional[bytes] = None
self.cali_coeff: Optional[List[Tuple[int, int]]] = None
self._show_data = False
if self._cali_package is None:
self._cali_package = cali_coeff
self.cali_coeff = self._decode_cali_coeff(self._cali_package)
if cali_coeff is not None:
self._cali_coeff = cali_coeff
self.cali_coeff = self._decode_cali_coeff(cali_coeff)
@staticmethod
def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
if cali_coeff != b'':
cis_data_len = 20
cali_table = []
phase_para_a = []
phase_para_b = []
hsrtia_a = []
hsrtia_b = []
rolloff = []
phase_coeff = []
phase_offset = []
hsrtia_c = []
hsrtia_d = []
phase_coeff = numpy.zeros([8, 4], dtype = int)
phase_offset = numpy.zeros([8, 4], dtype = int)
# print('cali_coeff', cali_coeff)
cutoff_freq = struct.unpack('>I', cali_coeff[1:5])[0] * 100 #4
# temp = struct.unpack('>B', cali_coeff[5:6])[0] #1
# hsrtia_200r = struct.unpack('>B', cali_coeff[6:7])[0] #1
# hsrtia_5k = struct.unpack('>H', cali_coeff[7:9])[0] #2
# hsrtia_20k = struct.unpack('>H', cali_coeff[6:8])[0] #2
# hsrtia_160k = struct.unpack('>I', cali_coeff[8:12])[0] #4
########################################
# phase_coeff
# [[freq0, freq1, freq2, freq3] ----->gain0
# [freq0, freq1, freq2, freq3] ----->gain1
# [freq0, freq1, freq2, freq3] ----->gain2
# [freq0, freq1, freq2, freq3] ----->gain3
# ]
#######################################
index = 20
for i in range(index, index+16, 8):
phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0])
#hstia=0
cis_cali_packet = 1
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
index = 40
for i in range(index, index+16, 8):
phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0])
cis_cali_packet = 2
index = (cis_cali_packet - 1) * cis_data_len
g = 0
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 3
index = (cis_cali_packet - 1) * cis_data_len
g = 0
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
#hstia=1
cis_cali_packet = 4
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
#Lv[0] 160k
index = 60
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
cis_cali_packet = 5
index = (cis_cali_packet - 1) * cis_data_len
g = 1
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 6
index = (cis_cali_packet - 1) * cis_data_len
g = 1
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
#Lv[1] 20k
index = 80
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
#hstia=2
cis_cali_packet = 7
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
#Lv[2] 5k
index = 100
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
cis_cali_packet = 8
index = (cis_cali_packet - 1) * cis_data_len
g = 2
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 9
index = (cis_cali_packet - 1) * cis_data_len
g = 2
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
#Lv[3] 200R
index = 120
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
#hstia=3
cis_cali_packet = 10
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
# hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0])
# hsrtia_b.append(struct.unpack('>I', cali_coeff[index+5:index+9])[0]/1e6)
# hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e5)
cis_cali_packet = 11
index = (cis_cali_packet - 1) * cis_data_len
g = 3
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 12
index = (cis_cali_packet - 1) * cis_data_len
g = 3
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
# print('cutoff_freq', cutoff_freq)
# print('hsrtia_a', hsrtia_a)
# print('hsrtia_b', hsrtia_b)
# print('hsrtia_c', hsrtia_c)
# print('phase_para_a', phase_para_a)
# print('phase_para_b', phase_para_b)
#hstia=4
cis_cali_packet = 13
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
cis_cali_packet = 14
index = (cis_cali_packet - 1) * cis_data_len
g = 4
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 15
index = (cis_cali_packet - 1) * cis_data_len
g = 4
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
#hstia=5
cis_cali_packet = 16
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
cis_cali_packet = 17
index = (cis_cali_packet - 1) * cis_data_len
g = 5
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 18
index = (cis_cali_packet - 1) * cis_data_len
g = 5
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
#hstia=6
cis_cali_packet = 19
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
cis_cali_packet = 20
index = (cis_cali_packet - 1) * cis_data_len
g = 6
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 21
index = (cis_cali_packet - 1) * cis_data_len
g = 6
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
#hstia=7
cis_cali_packet = 22
index = (cis_cali_packet - 1) * cis_data_len
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
cis_cali_packet = 23
index = (cis_cali_packet - 1) * cis_data_len
g = 7
phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
cis_cali_packet = 24
index = (cis_cali_packet - 1) * cis_data_len
g = 7
phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
print('hsrtia_a', hsrtia_a)
print('hsrtia_b', hsrtia_b)
print('rolloff', rolloff)
print('phase_coeff')
print(phase_coeff)
print('phase_offset')
print(phase_offset)
cali_table.append((phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff))
cali_table.append((cutoff_freq, phase_para_a, phase_para_b, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
return cali_table
else:
@@ -1634,10 +1449,10 @@ class EISZeroOneDataDecoder(RecDataDecoder):
@property
def name(self) -> AnyStr:
if self._cali_package is None:
if self._cali_coeff is None:
return self.NAME
else:
return self.NAME.encode() + b':' + self._cali_package
return self.NAME.encode() + b':' + self._cali_coeff
def message(self) -> Optional[str]:
ret = self._message
@@ -1655,14 +1470,9 @@ class EISZeroOneDataDecoder(RecDataDecoder):
time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0] # unit: ms
cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
d19 = data[19+3]
gain = data[20+3]
finishMode = (d19 & 0x80) >> 7
ch4 = struct.unpack('<i', data[21+3:25+3])[0] # Amp[uV]
gain = (d19 & 0x0F)
finishMode = (d19 & 0x80) >> 7
notify_one = struct.unpack('<i', data[25+3:29+3])[0]
notify_two = struct.unpack('<i', data[29+3:33+3])[0]
notify_three = struct.unpack('<i', data[33+3:37+3])[0]
if time_stamp == 0:
self._start_return_data = True
@@ -1670,7 +1480,7 @@ class EISZeroOneDataDecoder(RecDataDecoder):
return None
if time_stamp != 0 and self._start_return_data == True:
if (self._mode == 0 or self._mode == 5):
if (self._mode == 0):
time_stamp, delta, ret_get_time_stamp = self.eis_get_time_stamp(time_stamp)
else:
time_stamp, delta, ret_get_time_stamp = self.get_time_stamp(time_stamp)
@@ -1679,71 +1489,89 @@ class EISZeroOneDataDecoder(RecDataDecoder):
print("error timeStamp full data:", list(data), datetime.now(), '\n')
return None
else:
if self.cali_coeff is not None and (self._mode == 0 or self._mode == 5):
if self.cali_coeff is not None and self._mode == 0:
phase_para_a = []
phase_para_b = []
hsrtia_a = []
hsrtia_b = []
rolloff = []
phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff = self.cali_coeff[0]
hsrtia_c = []
hsrtia_d = []
cutoff_freq, phase_para_a, phase_para_b, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
voltage_amp = round(self._ac_amp * 800 / 2047) # use UI value
if (self._freq_start > self._freq_stop):
self._freq_direction = 0
else:
self._freq_direction = 1
if (self._mode == 0 or self._mode == 5):
if (self._mode == 0):
img = ch1
real = ch2
freq = ch3
fre_idx = 0
voltage_amp = round(ch4 / 1000) # Amp[mV]
rolloff_cali = rolloff[gain]
voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 / rolloff_cali ** 2 / 1e4)
current = (voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain]) / 1e8 #[nA]
voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 / cutoff_freq ** 2)
# if (gain == 3):
# current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
# else:
current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
# print(current)
# print(voltage_mag)
# print(hsrtia_a[gain])
# print(hsrtia_b[gain])
# print(hsrtia_c[gain])
if (current != 0):
# impedance[mOhm] = voltage_amp[mv] * 1000000 / 1.414213 / current[nA] #RMS=amp*SQRT(2), SQRT(2)=1.414213
impedance = voltage_amp * 707106.78 / current
# impedance = voltage_amp * 1000_000 / 1.414213 / current
impedance = voltage_amp * 707106.78 / current
else:
impedance = 0
raw_phase = math.atan2(img , real) * 180 / math.pi
if (freq >= 1000000): # 10000 Hz
fre_idx = 0
i = 0
elif (freq >= 10000): # 100 Hz
fre_idx = 1
i = 1
elif (freq >= 1000): # 10 Hz
fre_idx = 2
i = 2
elif (freq >= 1): # 0.01 Hz
fre_idx = 3
i = 3
ideal_raw_phase = phase_coeff[gain][fre_idx] /1e10 * freq + phase_offset[gain][fre_idx] / 1e6
phase = raw_phase - ideal_raw_phase
phase = phase % 180 if phase % 180<=90 else phase % 180-180
imag_after_cal = round(impedance * math.sin(phase * math.pi / 180))
real_after_cal = round(impedance * math.cos(phase * math.pi / 180))
# last_phase_to90 = self._last_phase % 180 if self._last_phase % 180<=90 else self._last_phase % 180-180
# diff = phase - last_phase_to90
# if (self._first_phase_flag):
# # self._last_phase = phase
# self._first_phase_flag = 0
# elif (abs(diff) >= 90):
# phase = self._last_phase + diff + (180 if diff<0 else-180)
# else:
# phase = self._last_phase + diff
# self._last_phase = phase
imag_after_cal = impedance * math.sin(round(phase) * math.pi / 180)
real_after_cal = impedance * math.cos(round(phase) * math.pi / 180)
if self._show_data:
if (self._mode == 0 or self._mode == 5):
if (self._mode == 0):
print('|', '{:10}'.format(time_stamp),
'|', '{:5}'.format(delta),
'|', '{:5}'.format(ch1), #raw_img
'|', '{:5}'.format(ch2), #raw_real
'|', '{:8}'.format(ch3 * 10), '[mHz]', #Frequency [mHz]
'|', '{:5}'.format(cycle_number), #cycle
'|', '{:5}'.format(round(imag_after_cal)), '[Ohm]', #Z_imag [Ohm]
'|', '{:5}'.format(round(real_after_cal)), '[Ohm]', #Z_real [Ohm]
'|', '{:5}'.format(round(impedance)), '[Ohm]', #Impedance [Ohm]
'|', '{:5}'.format(round(phase*1000)), '[mdegree]', #Phase [millidegree]
'|', '{:5}'.format(round(current)), '[nA]', #Current [nA]
'|', '{:1}'.format(gain), #gain
'|', '{:1}'.format(finishMode), #finishMode
'@', str(self.device), '|', flush = True)
print('|', '{:10}'.format(time_stamp),
'|', '{:5}'.format(delta),
'|', '{:5}'.format(notify_one),
'|', '{:5}'.format(notify_two),
'|', '{:5}'.format(notify_three),
'|', '{:5}'.format(voltage_amp), #amp[mV]
'|', flush = True)
'|', '{:5}'.format(delta),
'|', '{:6}'.format(ch1),
'|', '{:6}'.format(ch2),
'|', '{:8}'.format(ch3 / 100),
'|', '{:6}'.format(round(voltage_mag)),
'|', '{:5}'.format(int(imag_after_cal)),
'|', '{:5}'.format(int(real_after_cal)),
'|', '{:5}'.format(round(impedance)),
'|', '{:5}'.format(round(phase, 1)),
'|', '{:5}'.format(round(current, 3)),
'|', '{:1}'.format(gain),
'|', '{:1}'.format(finishMode),
'@', str(self.device), '|')
pass
else:
print('|', '{:10}'.format(time_stamp),
@@ -1754,7 +1582,7 @@ class EISZeroOneDataDecoder(RecDataDecoder):
'|', '{:5}'.format(cycle_number),
'|', '{:1}'.format(gain),
'|', '{:1}'.format(finishMode),
'@', str(self.device), '|', flush = True)
'@', str(self.device), '|')
pass
if finishMode == True:
@@ -1764,23 +1592,17 @@ class EISZeroOneDataDecoder(RecDataDecoder):
self._mode_stop = 0
ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
if self._mode == 0 or self._mode == 5:
ret.append_data(0, ch1) #raw_img
ret.append_data(1, ch2) #raw_real
if (self._mode == 0): #EIS Mode
ret.append_data(0, ch1) #Raw Imag
ret.append_data(1, ch2) #Raw Real
ret.append_data(2, ch3 * 10) #Frequency [mHz]
ret.append_data(3, cycle_number) #cycle
ret.append_data(4, imag_after_cal) #Z_imag [Ohm]
ret.append_data(5, real_after_cal) #Z_real [Ohm]
ret.append_data(3, cycle_number)
ret.append_data(4, round(imag_after_cal)) #Z_imag [Ohm]
ret.append_data(5, round(real_after_cal)) #Z_real [Ohm]
ret.append_data(6, round(impedance)) #Impedance [Ohm]
ret.append_data(7, round(phase*1000)) #Phase [millidegree]
ret.append_data(7, round(phase)) #Phase [degree]
ret.append_data(8, round(current)) #Current [nA]
ret.append_data(9, gain) #gain
#debug data
ret.append_data(10, notify_one)
ret.append_data(11, notify_two)
ret.append_data(12, notify_three)
ret.append_data(13, voltage_amp) #amp[mV]
ret.append_data(9, gain) #Gain Level
else: #CV Mode
ret.append_data(0, ch1) #Iin [nA]
+1 -1
View File
@@ -738,7 +738,7 @@ class DeviceCommonInstruction:
elif instruction == cls.START:
return '_data_format("TDC4VAF2")', '_notify(True)', 'VIS_STI', '_sync(True)'
elif instruction == cls.INTERRUPT:
return '_notify(False)', 'VIS_INT', '_sync(False)'
return '_sync(False)', '_notify(False)', 'VIS_INT'
elif instruction == cls.CLOSE:
return '_sync(False)', '_notify(False)', 'VIS_INT'
elif instruction == cls.CALL:
+11 -18
View File
@@ -283,7 +283,6 @@ class InternalInstruction(SingleInstruction):
PREDEFINED_SET = '_set'
PREDEFINED_CDR = '_cdr'
PREDEFINED_DISABLE_CACHE = '_disable_cache'
PREDEFINED_IDLE = '_idle'
PREDEFINED = (
PREDEFINED_SLEEP,
@@ -295,7 +294,6 @@ class InternalInstruction(SingleInstruction):
PREDEFINED_SET,
PREDEFINED_CDR,
PREDEFINED_DISABLE_CACHE,
PREDEFINED_IDLE,
)
__slots__ = ('_expr', '_para')
@@ -372,7 +370,6 @@ class InternalInstruction(SingleInstruction):
else:
data = [v for v in data]
print('cdr data:', data)
parser.parse_instruction(context, data)
@@ -777,12 +774,6 @@ class InstructionDataContent(InstructionContent):
def parse_instruction(self, context: Scope, buffer: List[int], offset: int = 0, shift: int = 0) -> Tuple[int, int]:
print('self._width', self._width)
print('self._width.size', self._width.size)
for _ in range (self._width.size - len(buffer)):
buffer.append(0)
if self._width.is_array:
raise NotImplementedError()
@@ -796,20 +787,21 @@ class InstructionDataContent(InstructionContent):
value = 0
for i in range(self._width.size):
if self._width.little_endian:
value |= (buffer[offset] << (1 * i))
else:
value = (value << 8) | buffer[offset]
if self._width.size == 1:
value = buffer[offset]
offset += 1
else:
for i in range(self._width.size):
if self._width.little_endian:
value |= (buffer[offset] << (1 * i))
else:
value = (value << 8) | buffer[offset]
offset += 1
if len(self._value) > 0:
context[self._value] = value
print('value',value)
print('hex(value)',hex(value))
return offset, 0
else:
@@ -827,6 +819,7 @@ class InstructionDataContent(InstructionContent):
if self._width.bytes_unit:
if shift != 0:
offset += 1
return offset + self._width.size, 0
else:
+16 -13
View File
@@ -968,7 +968,7 @@ class CompletedDevice(Device):
"""
__slots__ = ('_master', '_device_id', '_device', '_library', '_context',
'_parameter', '_configuration', '_lock', '_feature_mask',
'_cache_battery', '_cache_battery_timestamp', '_coeff', '_status', '_occupied_by_project')
'_cache_battery', '_cache_battery_timestamp', '_coeff', '_status')
def __init__(self, master: MasterDevice, library: DeviceLibrary, device_id: int, device: Device):
"""
@@ -986,8 +986,6 @@ class CompletedDevice(Device):
# device status ( 0: idle, 1: working, 2: error, 3: power off)
self._status = 0
# device be occupied by project
self._occupied_by_project = None
# context
s1 = library.constant
@@ -1084,14 +1082,6 @@ class CompletedDevice(Device):
def status(self, new_status):
self._status = new_status
@property
def occupied_by_project(self) -> str:
return self._occupied_by_project
@occupied_by_project.setter
def occupied_by_project(self, new_occupied_by_project):
self._occupied_by_project = new_occupied_by_project
# device parameter getter/setter
def parameters(self) -> List[str]:
@@ -1141,7 +1131,7 @@ class CompletedDevice(Device):
# raise RuntimeError('illegal parameter value : ' + value) from e
else:
if name == 'MODE':
if self.library_name.startswith('Elite_EDC') or 'EIS' in self.library_name:
if self.library_name.startswith('Elite_EDC'):
self.set_parameter('CTRL_HIGH_Z_15', self.get_parameter('HIGHZ_TABLE')[value])
self.set_parameter('TIME_DURATION', 0)
@@ -1313,7 +1303,6 @@ class CompletedDevice(Device):
'recording_file_name': self.recording_file_name,
'library_name': self._library.name,
'library_version': str(self._library.version),
'occupied_by_project': self._occupied_by_project,
'configuration': self.configuration.as_json(list_hide=True),
}
@@ -1403,6 +1392,20 @@ class DebugDevice(CompletedDevice):
def read_command_return_data(self) -> Optional[bytes]:
return None
def send_command(self, ins_type: int, ins_oper: int, *instruction: int):
length = len(instruction)
print('instruction send :',
'%02X' % ((ins_type & 0xF0) | (self.device_id & 0x0F)),
'%02X' % ((ins_oper & 0xF0) | (length & 0x0F)),
' '.join(map(lambda v: '%02X' % v, instruction)))
def send_instruction(self, ins_type: int, ins_oper: int, *instruction: int):
length = len(instruction)
print('instruction send :',
'%02X' % ((ins_type & 0xF0) | (self.device_id & 0x0F)),
'%02X' % ((ins_oper & 0xF0) | (length & 0x0F)),
' '.join(map(lambda v: '%02X' % v, instruction)))
@property
def battery(self) -> int:
return 100
+10 -14
View File
@@ -3697,6 +3697,7 @@ class CC2650Central(LoggerFlag):
def recv(self, timeout: Optional[float] = None) -> Optional[list]:
packet = self._recv_byte()
# print("packet = ", packet)
if packet is None:
return None
@@ -3708,8 +3709,6 @@ class CC2650Central(LoggerFlag):
def _recv_byte(self) -> Optional[int]:
ret = self._recv_bytes(1)
if ret is not None:
print('packet = {0}'.format(hex(ret[0]).upper()))
return ret[0] if ret is not None else None
def _recv_bytes(self, size: int = 1) -> Union[None, bytes]:
@@ -3725,28 +3724,27 @@ class CC2650Central(LoggerFlag):
return None
def _recv_event(self, timeout: Optional[float] = 1) -> Optional[list]:
packet = self._recv_byte()
code = self._recv_byte()
# print("code = ", code)
if packet is None:
if code is None:
return None
length = self._recv_byte()
len_b = _struct.pack("B", length)
data = b''
# print('code::',code,'length::',length)
_start = _time()
data = b''
while len(data) < length:
packets = self._recv_bytes(length - len(data))
# hex_packets = ''.join(format(i, '02x') for i in packets)
# print("packets = ", hex_packets.upper())
ret = self._recv_bytes(length - len(data))
# print("ret = ", ret)
if packets is not None:
data += packets
if ret is not None:
data += ret
elif timeout is not None and _time() - _start > timeout:
raise RecvTimeout()
data = len_b + data
self._interface.flush()
return list(data)
@@ -3762,7 +3760,5 @@ class CC2650Central(LoggerFlag):
raise RecvTimeout()
else:
uart_data_hex = ''.join(format(i, '02X') for i in uart_data)
# print('uart_data: 0x{0}'.format(uart_data_hex.upper()))
return uart_data
+7 -21
View File
@@ -35,7 +35,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
'_pin_ram_sel_value', '_pin_mem_sel_value', '_pin_mem_req_value',
'_read_green_times','_read_red_times',
'_elite_data_len', '_mem_header_len', '_mem_tailer_len', '_single_data_len',
'_head_wrong_cnt', '_pin_busy_value')
'_head_wrong_cnt')
def __init__(self,
select: Selector,
@@ -50,11 +50,11 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
# buffer
self._tx_buffer_header = [0] * 64
self._tx_buffer_header = [0] * 19
self._tx_buffer_data = [0] * (self._single_data_len * 10 + 3)
# memory control pin
self.pin_busy: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_BZY)
self.pin_busy = OutputPin.get_used(P3Pin.MEM_BZY, True)
self.pin_mem_req = OutputPin.get_used(P3Pin.MEM_REQ, False)
self.pin_mem_sel = OutputPin.get_used(P3Pin.MEM_RST, True) # MEM_RST -> actually which memory board is assign
self.pin_ram_sel: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_SEL) # MEM_SEL -> actually is RAM_SEL, which RAM is assign
@@ -62,7 +62,6 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
self._pin_ram_sel_value = [bool(self.pin_ram_sel) for _ in range(Selector.SIZE)]
self._pin_mem_sel_value = [bool(self.pin_mem_sel) for _ in range(Selector.SIZE)]
self._pin_mem_req_value = [bool(self.pin_mem_req) for _ in range(Selector.SIZE)]
self._pin_busy_value = [bool(self.pin_busy) for _ in range(Selector.SIZE)]
self._read_green_times = 0
self._read_red_times = 0
@@ -99,14 +98,6 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
self._pin_ram_sel_value[channel] = True
return self._pin_ram_sel_value[channel]
def get_pin_busy(self):
channel = self.select
if self.pin_busy.input() == 0:
self._pin_busy_value[channel] = False
else:
self._pin_busy_value[channel] = True
return self._pin_busy_value[channel]
@property
def select(self) -> int:
return self._selector.channel
@@ -225,9 +216,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
return
def recv_memory(self, device: int) -> Optional[bytes]:
# self.pin_busy.output(False)
# print('mem_req==ram_sel,[', self._pin_mem_req_value[device], ',', self._pin_ram_sel_value[device], ']')
self.pin_busy.output(False)
rx = []
@@ -311,9 +300,6 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
print("green data print:", data, device, datetime.now())
return None
# print('data=', list(data))
# print('Ram:', data[62])
if (length >= 4000):
flag_print = True
print("green data: big length:", length)
@@ -429,9 +415,9 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
except BaseException as e:
print(e)
# finally:
# # print("\n")
# self.pin_busy.output(True)
finally:
# print("\n")
self.pin_busy.output(True)
return bytes(rx)
-2
View File
@@ -53,8 +53,6 @@ class UARTInterface(LowLevelHardwareInterface):
:param data: raw byte instruction
:raises SerialTimeoutException:
"""
data_hex = ''.join(format(i, '02X') for i in data)
# print('send_byte: 0x{0}'.format(data_hex.upper()))
self._serial.write(data)
def recv_byte(self, size: int) -> Optional[bytes]:
+7 -77
View File
@@ -1,7 +1,6 @@
import sys
import json
import threading
import logging
from time import time, sleep
from datetime import datetime
@@ -15,9 +14,6 @@ from .instruction import Instruction
from biopro.device.manager import DeviceManager
from biopro.text import *
from biopro.db.base import Session
from biopro.db.collection import Collection
key_list = {
'deviceList': 'device',
}
@@ -50,28 +46,10 @@ class Project(threading.Thread):
self._count = 1 #流水號
self.log_verbose = log_verbose
self._logger = logging.getLogger('project')
self._logger.setLevel('DEBUG')
self._formatter = logging.Formatter('[%(asctime)s.%(msecs)03d] %(message)s', datefmt='%Y-%m-%d %H:%M:%S')
self._formatter_with_nothing = logging.Formatter('%(message)s')
self.setup_project(project)
self.setup_device(self._device)
# create log file handler
fh = logging.FileHandler(f'/home/pi/logger/project/{self.uuid}.log', mode="w")
fh.setFormatter(self._formatter)
self._logger.addHandler(fh)
default_name = 'admin'
default_parent = {"folder": [1]}
collection = Collection.find_collection(default_name, default_parent)
parent = {"folder": [collection.id]}
# create project folder
collection = Collection.create_collection(self.name, parent)
self.setup_collection(collection)
def setup_project(self, project):
for (key, value) in project.items():
if key in key_list.keys():
@@ -88,11 +66,7 @@ class Project(threading.Thread):
for device in device_list:
mac_address = device_list[device]['pair']
complete_device = self._device_manager.get_device(mac_address)
complete_device.occupied_by_project = self._uuid
self._complete_device[device] = complete_device
def setup_collection(self, collection):
self._task_manager.create_collection(collection)
@property
def id(self) -> int:
@@ -162,23 +136,9 @@ class Project(threading.Thread):
def running_task(self):
return self._task_manager.running_task
def get_device_parameter_set(self, device_address):
parameter_set = self._task_manager.running_task.parameter_set
return next((x for x in parameter_set if parameter_set[x]['target'] == device_address), None)
def get_cycle(self, task):
for index, _cycle in enumerate(self.cycle):
if task.uuid in _cycle['range']:
return _cycle
def run(self):
# project status change running (1)
self._status = 1
# save start time
self._start_time = time()
# saving & broadcast message
self._logger.info('Project ' + self.name + ' start')
self.log_verbose('Project ' + self.name + ' start')
self.mqtt_thread.broadcast_command('project:' + self._name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
@@ -201,17 +161,12 @@ class Project(threading.Thread):
for condition in match_condition_list:
match_action_list = task.get_match_action(condition.id)
print('match_action_list', match_action_list, match_action_list)
for action in match_action_list:
if action.type == 'cycle' and condition.type == 'previous_task_done':
self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
self._task_manager.set_running_task(task)
cycle_info = self.get_cycle(task)
if cycle_info['useID'] == False:
self._logger.info(f'---------- Cycle {task.name} Round {cycle_info["count"]} -----------')
if action.type == 'cycle' and condition.type == 'until_button_trigger':
self._task_manager.running_task.stop()
self._logger.info(f'---------- Cycle {cycle_info["id"]} Round {cycle_info["count"]} -----------')
if self._task_manager.running_task != None:
if self._task_manager.running_task.uuid == task.uuid and action.type == 'cycle' and condition.type == 'after_task_run':
@@ -220,7 +175,6 @@ class Project(threading.Thread):
if action.type == 'start':
if task.status != 1:
self._task_manager.set_running_task(task)
self._logger.info(f'Task {str(self._task_manager.running_task.name)} start')
self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
# elif action.type == 'stop':
# self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
@@ -230,15 +184,12 @@ class Project(threading.Thread):
elif action.type == 'idle':
self._task_manager.running_task.stop()
# elif action.type == 'stop':
# self._task_manager.running_task.stop()
instruction_set = None
if action.target is not None:
device = self._complete_device[action.target]
if ((action.type == 'start' and device.status == 0) or (action.type == 'stop' and device.status == 1)):
self._logger.info(f'Device {device.mac_address_in_str} {action.type}')
self.log_verbose('Project' + self.name + 'Task ' + task.name + ' match_condition ' + condition.type + ' trigger_action ' + action.type + ' ' + str(action.target))
task_info = task.get_task_info(action)
instruction_set = getattr(self._instruction_set, action.type, None)
@@ -272,29 +223,25 @@ class Project(threading.Thread):
task_info['file_name'] += '#' + str(cycle_info['name']) + '-' + str(cycle_info['count'])
self.log_verbose('file name ' + task_info['file_name'])
if instruction_set != None and self.get_device_parameter_set(action.target) != None:
for instruction in instruction_set:
print('instruction 1', device, instruction, datetime.now())
args = list(map(lambda arg: task_info[arg], instruction['arguments']))
target=getattr(device, instruction['method'])(*args)
print('instruction 2', device, instruction, datetime.now())
if instruction_set != None and len(task.parameter_set) > 0:
if action.type == 'start':
self._count += 1
for instruction in instruction_set:
args = list(map(lambda arg: task_info[arg], instruction['arguments']))
target=getattr(device, instruction['method'])(*args)
delay_time += (time() - now)
# check task not running then stop
if self.check_running_task_not_run() == True:
# self._logger.info(f'taskType {self._task_manager.running_task.name} {self._task_manager.running_task.type}')
if self._task_manager.running_task.type == '':
self._logger.info(f'Task {self._task_manager.running_task.name} stop')
self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
self._task_manager.running_task.stop()
# check project done then close project
if self.check_project_done() == True:
print('project stop at', datetime.now())
self.stop()
self.close()
if self._time_interval - delay_time > 0:
sleep(self._time_interval - delay_time)
@@ -304,19 +251,14 @@ class Project(threading.Thread):
pass
def stop(self):
for device in self._complete_device:
self._complete_device[device].occupied_by_project = None
self._task_manager.running_task.stop()
self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
self._status = 2
self._end_time = time()
self._stop_flag = True
self._logger.info('Project ' + self.name + ' stop')
self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
def close(self):
for device in self._complete_device:
self._complete_device[device].occupied_by_project = None
self._status = 2
self._end_time = time()
self._stop_flag = True
@@ -375,18 +317,6 @@ class Project(threading.Thread):
'device': self._device,
'task': self.task_list,
'running_task': running_task,
'cycle': self._cycle,
'count': self._count,
}
return data
def info_pass_data_server(self):
if self._task_manager.running_task is not None:
running_task = self._task_manager.running_task.as_json()
data = {
'project': self._uuid,
'task': running_task,
'cycle': self._cycle,
'serial_number': self._count,
'cycle': self._cycle
}
return data
+3 -32
View File
@@ -5,7 +5,6 @@ from xml.dom.expatbuilder import parseString
import paho.mqtt.client as mqtt
from biopro.text import *
from .task import Task
from biopro.db.collection import Collection
_RUNTIME_COMPILE = False
@@ -57,24 +56,12 @@ class TaskManager():
def get_index_by_uuid(self, uuid):
return next((i for i, x in enumerate(self.task_list) if x.uuid == uuid), None)
def check_task_is_cycle_start(self, task):
for index, cycle in enumerate(self._cycle_list):
if cycle['range'][0] == task.uuid:
return index
def check_task_is_cycle_end(self, task):
for index, cycle in enumerate(self._cycle_list):
if cycle['range'][1] == task.uuid:
return index
def check_task_in_cycle(self, task_index):
for index, cycle in enumerate(self._cycle_list):
if self.get_index_by_uuid(cycle['range'][0]) <= task_index:
if self.get_index_by_uuid(cycle['range'][1]) >= task_index:
return True
return False
@property
def check_list(self):
return [self._running_task, *self._next_task]
@@ -134,7 +121,6 @@ class TaskManager():
if self._prev_task.status == 1:
self._prev_task.stop()
# if reach cycle end, count < max, then go to cycle start
cycle_start_index = self.check_task_is_cycle_start(task)
cycle_index = self.check_task_is_cycle_end(task)
if cycle_index is None:
# print('next', self._running_task.name, self._running_task.next)
@@ -149,33 +135,18 @@ class TaskManager():
cycle = self._cycle_list[cycle_index]
if int(cycle['count']) < int(cycle['max']):
self._next_task.append(self.get_task_by_uuid(cycle['range'][0]))
# cycle['count'] += 1
cycle['count'] += 1
else:
for task_uuid in self._running_task.next:
_task = next((task for task in self._task_list if task.uuid == task_uuid), None)
if _task != None:
_task.reset()
self._next_task.append(_task)
# cycle['count'] = 1
if cycle_start_index != None:
cycle = self._cycle_list[cycle_start_index]
if int(cycle['count']) < int(cycle['max']):
cycle['count'] += 1
else:
cycle['count'] = 1
cycle['count'] = 1
except RuntimeError as e:
print(e)
def get_task(self, task_id):
return self._task_list[task_id]
def create_collection(self, parent):
for index, task in enumerate(self._task_list):
if self.check_task_in_cycle(index) == True:
if task.type == '':
collection = Collection.create_collection(task.name, {"folder": [parent.id]})
task.parent = {"folder": [collection.id]}
else:
task.parent = {"folder": [parent.id]}
+4 -15
View File
@@ -118,7 +118,7 @@ class RecordingMetaFile(JsonSerialize):
'_dirty', '_last_modify_time', '_file_size_cache',
'_recording_file_ch', '_recording_sub_file', '_size',
'_parameter', '_parent', '_recording_file_name', '_recording_sub_mini', '_recording_mini_ch',
'_raw_serial_number', '_mini_serial_number', '_device_id', '_project_id')
'_raw_serial_number', '_mini_serial_number', '_device_id')
def __init__(self, filepath: Union[str, Path], data_format: bytes = None, id_db = 0, database = None):
if isinstance(filepath, str):
@@ -153,7 +153,6 @@ class RecordingMetaFile(JsonSerialize):
self._parent = ''
self._recording_file_name = ''
self._device_id = -1
self._project_id = None
# recording parameter
self._configuration = None
@@ -298,7 +297,6 @@ class RecordingMetaFile(JsonSerialize):
'uuid': str(self._file_uuid),
'data_format': 'rec',
'device': self._device,
'project': self._project_id,
}
if len(self._parent) > 0:
@@ -464,7 +462,7 @@ class RecordingMetaFile(JsonSerialize):
def parameter(self) -> str:
return self._parameter
@parameter.setter
@device.setter
def parameter(self, parameter):
self._parameter = parameter
return None
@@ -473,7 +471,7 @@ class RecordingMetaFile(JsonSerialize):
def parent(self) -> str:
return self._parent
@parent.setter
@device.setter
def parent(self, parent):
self._parent = parent
@@ -481,7 +479,7 @@ class RecordingMetaFile(JsonSerialize):
def recording_file_name(self) -> str:
return self._recording_file_name
@recording_file_name.setter
@device.setter
def recording_file_name(self, recording_file_name):
self._recording_file_name = recording_file_name
@@ -494,15 +492,6 @@ class RecordingMetaFile(JsonSerialize):
self._configuration = conf
self._dirty = True
return None
@property
def project_id(self) -> int:
return self._project_id
@project_id.setter
def project_id(self, project: int):
self._project_id = project
return None
@property
def channels(self) -> List[int]:
+10 -23
View File
@@ -4,6 +4,7 @@ from time import time, sleep
from typing import Iterable
from datetime import datetime
import gc
import base64
from biopro.data import *
@@ -26,6 +27,7 @@ from .mqtt import MqttDataMessageHandler, MqttThread
from .database import DataBaseProcess
from .recording import RecordingProcess
from multiprocessing import Queue
import queue
from json import loads as json_parse, dumps as _json_stringify
import json
@@ -315,8 +317,7 @@ class DataServer(SocketServer, DataAPI):
def update_device_configuration(self,
device: str,
meta_file: Union[str, Path, RecordingMetaFile],
data_format: Union[AnyStr, DataDecodeFormat],
project_info: str):
data_format: Union[AnyStr, DataDecodeFormat]):
# meta file
device_id = -1
@@ -344,8 +345,6 @@ class DataServer(SocketServer, DataAPI):
_parent = json_stringify(_device['parent'])
_recording_file_name = _device['recording_file_name']
mac_address = json.loads(device)['device_address']
device_id = _device['device_id']
del _device['configuration']
del _device['parent']
del _device['recording_file_name']
@@ -355,22 +354,13 @@ class DataServer(SocketServer, DataAPI):
# meta_file.parameter = _parameter
# meta_file.parent = _parent
# meta_file.recording_file_name = _recording_file_name
device_id = int(json.loads(device)['device_id'])
if device_id < 0:
raise ValueError('illegal device ID : ' + str(device_id))
self.log_verbose('device ID', device_id)
# project binding meta file
# project_id = None
# _project = None
# if project_info != None:
# _project = json.loads(project_info)
# self.database_process.put_queue(['project_insert', device_id, _project])
# result = self._queue_ds_dict[int(device_id)].get()
# if result[0] == 'project_id':
project_id = project_info
# while len(self._configurations) <= device_id:
# self._configurationsappend(None)
@@ -390,6 +380,8 @@ class DataServer(SocketServer, DataAPI):
else:
data_format = data_format.name
# self.log_verbose('device data format', data_format)
self.log_verbose('device meta file', meta_file)
# data runtime
@@ -414,15 +406,15 @@ class DataServer(SocketServer, DataAPI):
c.shutdown()
c.join()
self._spi.set_wait_flag(c._device, True)
data_runtime_process = RecordingProcess('data_server', self.log_verbose, device_id,
Queue(), self._queue_ds_dict[int(device_id)], self._queue_msg, meta_file,
json_stringify(_device), _parameter, _parent, _recording_file_name,
data_format, self.socket_mqtt_ip, self.socket_mqtt_port,
project_id = project_id,
database = self.database_process)
data_format, self.socket_mqtt_ip, self.socket_mqtt_port,
database = self.database_process )
# data_runtime_process.start()
# check channel
if isinstance(data_runtime_process, RecordingProcess) and device_id not in self._available_channel:
raise RuntimeError('set device configuration on un-available channel', device_id)
@@ -654,7 +646,6 @@ class DataServer(SocketServer, DataAPI):
def whether_to_record(self, device):
# if user click "start", return True; if user click "stop", return False;
if device in self._configurations.keys() and self._configurations[device] is not None:
# print(self._configurations.keys(), ',', device, datetime.now())
return True
else:
return False
@@ -663,9 +654,6 @@ class DataServer(SocketServer, DataAPI):
ret = False
sync = self.get_spi_obj()
busy = sync.get_pin_busy()
# print('pin_busy=', busy, device, datetime.now())
if sync.get_pin_mem_req() == sync.get_pin_ram_sel():
spi_data = sync.recv_memory(device)
signal = sync.get_pin_mem_req()
@@ -674,7 +662,6 @@ class DataServer(SocketServer, DataAPI):
else:
data = None
print('data=None, mem_req!=ram_sel, [', sync.get_pin_mem_req(), ', ', sync.get_pin_ram_sel(), ']', device, datetime.now())
if data is not None:
if self._configurations.get(device, None) != None:
+3 -34
View File
@@ -222,8 +222,7 @@ class DataBaseProcess(Process):
try:
sql_cursor.execute(sql_str, sql_set)
except BaseException as e:
print('meta create error', e)
except:
self._psql_conn.commit()
sql_cursor.close()
self._queue_error.put(device_id)
@@ -250,8 +249,7 @@ class DataBaseProcess(Process):
try:
sql_cursor.execute(sql_str, sql_set)
except BaseException as e:
print('meta update error', e)
except:
self._psql_conn.commit()
sql_cursor.close()
self._queue_error.put(device_id)
@@ -552,33 +550,4 @@ class DataBaseProcess(Process):
except psycopg2.Error as e:
print('e', e)
return True
def project_insert(self, device_id, _data):
sql_str = 'INSERT INTO "public"."project_metas" ('
sql_set = []
for item in _data.keys():
sql_str = sql_str + str(item) + ', '
if isinstance(_data[item], dict) or isinstance(_data[item], list):
sql_set.append(json_stringify(_data[item]))
else:
sql_set.append(_data[item])
sql_str = sql_str[0:-2] + ') VALUES ('
for item in _data.keys():
sql_str = sql_str + '%s, '
sql_str = sql_str[0:-2] + ') RETURNING id'
sql_cursor = self._psql_conn.cursor()
try:
sql_cursor.execute(sql_str, sql_set)
except BaseException as e:
print('insert error', e)
self._psql_conn.commit()
sql_cursor.close()
self._queue_error.put()
finally:
self._queue_ds[int(device_id)].put(['project_id', int(sql_cursor.fetchone()[0])])
self._psql_conn.commit()
sql_cursor.close()
return True
+36 -69
View File
@@ -1,7 +1,6 @@
from time import sleep
from typing import Iterable
from datetime import datetime
import json
import biopro.impl.vcgencmd as vcg
from biopro.data import DataServerOptions, DataAPI
@@ -32,11 +31,8 @@ from biopro.api.auth import AuthAPI
from biopro.api.controller import ControllerAPI
from biopro.api.device import DeviceAPI
from biopro.project.project_manager import ProjectManager
from biopro.db.base import Base, Session, engine
from biopro.db.project_report import ProjectReport
from biopro.db.project_meta import MetaProjectInfo
from biopro.db.device import Device
### do not import Websocket mode
###from .websocket import WebsocketThread
_RUNTIME_COMPILE = False
@@ -121,8 +117,8 @@ class ControlServer(SocketServer, ControlServerAPI):
self.ups_thread = UPSDetectThread(self, c.flag_ups_wait_time)
# user session
# self._session = {}
# self._user_session_expire = c.user_session_expire_days * 24 * 60 * 60 # sec
self._session = {}
self._user_session_expire = c.user_session_expire_days * 24 * 60 * 60 # sec
# indicate those device together
self._device_instruction_group = None
@@ -133,10 +129,6 @@ class ControlServer(SocketServer, ControlServerAPI):
# _api request build
self._api = ApiRequests()
# sqlalchemy
Base.metadata.create_all(engine)
self._session = Session()
# init method
def _init_file_manager(self, option: ControlServerOptions) -> FileManager:
@@ -828,19 +820,16 @@ class ControlServer(SocketServer, ControlServerAPI):
@logging_info
def device_battery(self, device:int) -> List[int]:
try:
battery = {}
if device == 'all':
device_list = self.device_manager.list_device()
if len(device_list) > 0:
battery = list(map(lambda x: {"device": x.memory_board, "battery":self.device_manager.get_device(x).battery}, device_list))
else:
battery = {
"device": device,
"battery": self.device_manager.get_device(device).battery
}
except AttributeError as e:
print('device_battery', device, 'not found', e)
battery = {}
if device == 'all':
device_list = self.device_manager.list_device()
if len(device_list) > 0:
battery = list(map(lambda x: {"device": x.memory_board, "battery":self.device_manager.get_device(x).battery}, device_list))
else:
battery = {
"device": device,
"battery": self.device_manager.get_device(device).battery
}
return battery
@logging_info
@@ -863,32 +852,20 @@ class ControlServer(SocketServer, ControlServerAPI):
@logging_info
def device_update_calibration(self, device: int) -> Union[bool, str]:
connect_device = self.device_manager.get_device(device)
if connect_device == None:
return
mac_address = address_str(connect_device.mac_address)
device = Device.get_device({"mac_address": mac_address})
mac_address = connect_device.mac_address
try:
if connect_device.library.name.startswith('Elite_EIS_1.1'):
# update calibration version
connect_device._device.update_cali_version()
# check if is first time or calibration version is different
if connect_device._device._cali_version == -1 or (device.calibration_version != connect_device._device._cali_version):
# get calibration info from device
connect_device.calibration_info('EISZeroOne')
# update_calibration_info
Device.update_device(
{ "mac_address": mac_address },
{
'calibration': connect_device.calibration ,
'calibration_version': connect_device._device._cali_version
}
)
else:
connect_device._device._coeff = device.calibration
if connect_device.library.name.startswith('Neulive3.'):
connect_device.calibration_info('NeuliveThreeOne')
elif connect_device.library.name.startswith('Neulive'):
connect_device.calibration_info('TDC4VC')
elif connect_device.library.name.startswith('EliteEIS'):
connect_device.calibration_info('EISZeroOne')
except BaseException as e:
# reset device info in db
DeviceAPI.updateByMac(
mac_address,
address_str(mac_address),
{
'connect_id': -1,
'connect_status': 'idle',
@@ -900,6 +877,14 @@ class ControlServer(SocketServer, ControlServerAPI):
print(e)
return False
else:
# update_calibration_info
DeviceAPI.updateByMac(
address_str(mac_address),
{
'calibration': str(connect_device.calibration)
}
)
# DeviceAPI.updateByAttrs('connect_status', 'update', {"connect_status": 'connect'})
return True
@logging_info
@@ -1036,17 +1021,8 @@ class ControlServer(SocketServer, ControlServerAPI):
@logging_info
def run_project(self, project) -> bool:
if project is not None:
# print(project)
project = self._project_manager.create(project)
with self._session as session:
project_report = ProjectReport(
name = project.name,
uuid = project.uuid,
cycle = project.cycle,
task = project.task_list,
device = project.device
)
session.add(project_report)
session.commit()
self._project_manager.run_project(project)
return project.as_json()
@@ -1088,10 +1064,6 @@ class ControlServer(SocketServer, ControlServerAPI):
elif oper == InternalInstruction.PREDEFINED_DISABLE_CACHE:
return True
elif oper == InternalInstruction.PREDEFINED_IDLE:
device.status = 1
return True
else:
return False
@@ -1106,8 +1078,6 @@ class ControlServer(SocketServer, ControlServerAPI):
self.log_verbose('update data format', value)
client = self.data_server.client()
project = None
project_meta_id = None
if client is not None:
info = self.file_manager.use(device)
@@ -1118,13 +1088,9 @@ class ControlServer(SocketServer, ControlServerAPI):
filename = self._file_save_cache.get(device.device_id, self.TEMP_FILENAME_EXPR)
filename = format_filename(filename, device)
info = self.file_manager.save(device, filename)
if device.occupied_by_project != None:
project = self.project_manager.get(device.occupied_by_project).info_pass_data_server()
project_meta_id = MetaProjectInfo.create_project_meta(project)
with client:
client.update_device_configuration(device, info.meta_file, value, project_meta_id)
client.update_device_configuration(device, info.meta_file, value)
def _device_set_disable_cache(self, device: CompletedDevice, disable):
if disable:
@@ -1158,6 +1124,7 @@ class ControlServer(SocketServer, ControlServerAPI):
filename = format_filename(self.TEMP_FILENAME_EXPR, device)
info = self.file_manager.save(device, filename)
client.update_device_configuration(device, info.meta_file, RawDataDecoder())
if self._device_instruction_group is None:
client.start_sync(device)
+4 -4
View File
@@ -44,9 +44,7 @@ class RecordingProcess(Process):
def __init__(self, client_id: str, log_verbose, device_id, queue_rec, queue_ds, queue_msg, meta_path,
device_info, parameter, parent, recording_file_name, data_format,
mqtt_ip, mqtt_port,
name = 'Recording-Process',
project_id = None,
database = None):
name = 'Recording-Process', database = None):
super(RecordingProcess, self).__init__(name = name)
self._database = database
@@ -59,7 +57,6 @@ class RecordingProcess(Process):
self._meta_file._parent = parent
self._meta_file._recording_file_name = recording_file_name
self._meta_file._device_id = device_id
self._meta_file._project_id = project_id
print(self._meta_file._device, self._meta_file._parameter, self._meta_file._parent, self._meta_file._filepath)
self._meta_file.write(self._database)
@@ -158,6 +155,9 @@ class RecordingProcess(Process):
elif isinstance(decoder, EISZeroOneDataDecoder):
# get amp_gain from meta file
decoder._mode = self._meta_file.configuration.get_parameter('MODE')
decoder._ac_amp = self._meta_file.configuration.get_parameter('AC_AMP')
decoder._freq_start = self._meta_file.configuration.get_parameter('FREQ_START')
decoder._freq_stop = self._meta_file.configuration.get_parameter('FREQ_STOP')
return decoder
+1 -1
View File
@@ -93,7 +93,7 @@ class SocketClient(metaclass=abc.ABCMeta):
if self._socket is None:
try:
self._socket = Socket(AF_UNIX, SOCK_STREAM)
self._socket.settimeout(5)
self._socket.settimeout(3)
self._socket.connect(self._socket_file)
except Exception as e:
print('open_socket error:', e)
File diff suppressed because it is too large Load Diff
@@ -6,7 +6,7 @@
"major_product_number": 0,
"minor_product_number": 3,
"major_version_number": 1,
"minor_version_number": 1
"minor_version_number": 0
},
"constant": {
"TIME_MAX": 100000,
@@ -780,7 +780,7 @@
"expression": "VALUE"
}
},
"CA_VOLT": {
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
@@ -1301,7 +1301,7 @@
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pc": "DAC_LEVEL_V_OUT_15",
@@ -33,7 +33,6 @@
0,
1,
1,
1,
1
],
"domain": {
@@ -618,8 +617,7 @@
"Open Circuit Potential",
"Pulse Sensing",
"Differential Pulse Voltammetry (DPV)",
"Chronopotentiometry",
"Idle"
"Chronopotentiometry"
]
},
"VOLT_ORIGIN": {
@@ -820,7 +818,7 @@
"expression": "VALUE"
}
},
"CA_VOLT": {
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
@@ -951,7 +949,6 @@
"10": "cali_dac_test",
"11": "cali_adc_test",
"12": "",
"17": "idle",
"*": "start_data"
}
}
@@ -979,9 +976,6 @@
"VIS_STI",
"_cdr('1X;4X>ADC_VALUE_I')"
],
"idle": [
"_idle()"
],
"start_data": [
"data_format",
"_notify(True)",
@@ -1029,7 +1023,7 @@
"6": "const_current",
"7": "curve_cv3",
"8": "curve_lsv",
"9": "curve_ca",
"9": "curve_const_vscan",
"13": "curve_ocp",
"14": "curve_pulse_sensing",
"15": "curve_dpv",
@@ -1366,10 +1360,10 @@
"2B>pe"
]
},
"curve_ca": {
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pc": "DAC_LEVEL_V_OUT_15",
@@ -1,12 +1,12 @@
{
"name": "Elite_EDC_1.5re",
"name": "Elite_EDC_1.5r2",
"version": "1.2.30",
"match_rule": {
"local_name_pattern": "Elite.*",
"major_product_number": 0,
"minor_product_number": 2,
"major_version_number": 1,
"minor_version_number": 7
"minor_version_number": 8
},
"constant": {
"TIME_MAX": 100000,
@@ -33,7 +33,6 @@
0,
1,
1,
1,
1
],
"domain": {
@@ -618,8 +617,7 @@
"Open Circuit Potential",
"Pulse Sensing",
"Differential Pulse Voltammetry (DPV)",
"Chronopotentiometry",
"Idle"
"Chronopotentiometry"
]
},
"VOLT_ORIGIN": {
@@ -820,7 +818,7 @@
"expression": "VALUE"
}
},
"CA_VOLT": {
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
@@ -951,7 +949,6 @@
"10": "cali_dac_test",
"11": "cali_adc_test",
"12": "",
"17": "idle",
"*": "start_data"
}
}
@@ -979,9 +976,6 @@
"VIS_STI",
"_cdr('1X;4X>ADC_VALUE_I')"
],
"idle": [
"_idle()"
],
"start_data": [
"data_format",
"_notify(True)",
@@ -1029,7 +1023,7 @@
"6": "const_current",
"7": "curve_cv3",
"8": "curve_lsv",
"9": "curve_ca",
"9": "curve_const_vscan",
"13": "curve_ocp",
"14": "curve_pulse_sensing",
"15": "curve_dpv",
@@ -1366,10 +1360,10 @@
"2B>pe"
]
},
"curve_ca": {
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pc": "DAC_LEVEL_V_OUT_15",
@@ -33,7 +33,6 @@
0,
1,
1,
1,
1
],
"domain": {
@@ -618,8 +617,7 @@
"Open Circuit Potential",
"Pulse Sensing",
"Differential Pulse Voltammetry (DPV)",
"Chronopotentiometry",
"Idle"
"Chronopotentiometry"
]
},
"VOLT_ORIGIN": {
@@ -820,7 +818,7 @@
"expression": "VALUE"
}
},
"CA_VOLT": {
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
@@ -951,7 +949,6 @@
"10": "cali_dac_test",
"11": "cali_adc_test",
"12": "",
"17": "idle",
"*": "start_data"
}
}
@@ -979,9 +976,6 @@
"VIS_STI",
"_cdr('1X;4X>ADC_VALUE_I')"
],
"idle": [
"_idle()"
],
"start_data": [
"data_format",
"_notify(True)",
@@ -1029,7 +1023,7 @@
"6": "const_current",
"7": "curve_cv3",
"8": "curve_lsv",
"9": "curve_ca",
"9": "curve_const_vscan",
"13": "curve_ocp",
"14": "curve_pulse_sensing",
"15": "curve_dpv",
@@ -1366,10 +1360,10 @@
"2B>pe"
]
},
"curve_ca": {
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pc": "DAC_LEVEL_V_OUT_15",
+178 -350
View File
@@ -9,7 +9,7 @@
"minor_version_number": 0
},
"constant": {
"FREQ_MAX": 13333334,
"FREQ_MAX": 4294967296,
"VOLT_MAX": 65536,
"BLE_WRITE_MAX": 255,
"TIME_MAX": 100000
@@ -26,44 +26,17 @@
"expression": "VALUE"
}
},
"HIGHZ_TABLE": {
"initial": [
1,
1,
1,
0,
1,
1,
1,
1
],
"domain": {
"list": [
100
]
},
"value": "VALUE"
},
"CTRL_HIGH_Z_15": {
"description": "ctrl highZ level",
"CHANNEL": {
"derzteription": "record channels",
"record_meta": true,
"initial": 1,
"value": [
"On",
"Off"
],
"on_change": "set_ctrl_highZ"
"domain": "property",
"value": "[0, 1, 2]"
},
"CYCLE_NUMBER": {
"description": "CV cycle number",
"CHANNEL_LABEL": {
"description": "channel label",
"record_meta": true,
"initial": 1,
"domain": [
65536
],
"value": {
"expression": "VALUE"
}
"domain": "property",
"value": "['current', 'voltage', 'impedance']"
},
"SAMPLE_RATE": {
"description": "data sampling rate",
@@ -77,12 +50,6 @@
},
"on_change": "set_sample_rate"
},
"CHANNEL": {
"derzteription": "record channels",
"record_meta": true,
"domain": "property",
"value": "[0, 1, 2]"
},
"AMP_GAIN": {
"description": "amp gain",
"record_meta": true,
@@ -96,64 +63,11 @@
"EIS CURVE",
"Cyclic Voltammetry",
"Chronoamperometric",
"V-T Graph",
"R-T Graph",
"EIS constant frequency",
"Dev Mode",
"Idle"
"Dev Mode"
]
},
"GENERAL_HS_RTIA": {
"description": "High speed rtia gain",
"record_meta": true,
"initial": 8,
"value": [
0,
1,
2,
3,
4,
5,
6,
7,
8
],
"on_change": "set_general_hs_rtia"
},
"GENERAL_LP_RTIA": {
"description": "Low power rtia gain",
"record_meta": true,
"initial": 4,
"value": [
"0",
"1",
"2",
"3",
"auto"
],
"on_change": "set_general_lp_rtia"
},
"EIS_DC_BIAS": {
"description": "DC voltage bias",
"record_meta": true,
"initial": 25000,
"domain": [
"VOLT_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_AC_AMP": {
"description": "AC Amplitude",
"record_meta": true,
"initial": 26,
"domain": [
2048
]
},
"EIS_FREQ": {
"description": "[start, stop] of frequency scan",
"FREQ": {
"description": "DPV current recording period start",
"record_meta": true,
"initial": [
13333333,
@@ -166,24 +80,29 @@
},
"value": "VALUE"
},
"EIS_PPD": {
"description": "Point per decades",
"FREQ_START": {
"description": "Start of Freq Scan",
"record_meta": true,
"initial": 10,
"initial": 13422819,
"domain": [
11
]
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_SCALE": {
"description": "Point spacing pattern",
"FREQ_STOP": {
"description": "End of Freq Scan",
"record_meta": true,
"initial": 0,
"value": [
0,
1
]
"initial": 7,
"domain": [
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_DELAY": {
"DELAY": {
"description": "Wait x peroid before start taking measurements",
"record_meta": true,
"initial": 0,
@@ -194,19 +113,19 @@
"expression": "VALUE"
}
},
"EIS_AVERAGE_NUM": {
"AVERAGE_NUM": {
"description": "Number of sample used for average funciton",
"record_meta": true,
"initial": 8,
"value": [
2,
4,
6,
8
8,
16
]
},
"CF_DC_BIAS": {
"description": "DC voltage bias",
"DC_BIAS": {
"description": "DC voltage bias in mV",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -216,34 +135,15 @@
"expression": "VALUE"
}
},
"CF_AC_AMP": {
"description": "AC Amplitude",
"AC_AMP": {
"description": "AC Amplitude in mV",
"record_meta": true,
"initial": 26,
"initial": 25,
"domain": [
2048
]
},
"CF_FREQ": {
"description": "frequency of cf",
"record_meta": true,
"initial": 13333333,
"domain": [
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"CF_PPD": {
"description": "Point per decades",
"record_meta": true,
"initial": 10,
"domain": [
11
]
},
"CF_SCALE": {
"SCALE": {
"description": "Point spacing pattern",
"record_meta": true,
"initial": 0,
@@ -252,29 +152,77 @@
1
]
},
"CF_DELAY": {
"description": "Wait x peroid before start taking measurements",
"PPD": {
"description": "Point per decades",
"record_meta": true,
"initial": 0,
"initial": 10,
"domain": [
101
11
]
},
"RTIA": {
"description": "High speed tia gain",
"record_meta": true,
"initial": 4,
"value": [
0,
1,
2,
3,
4
]
},
"ADC_VALUE_I": {
"description": "ADC value current value",
"domain": "int"
},
"Scan_Rate": {
"description": "Voltage Scan Rate",
"record_meta": true,
"initial": 10000,
"domain": [
100001
],
"value": {
"expression": "VALUE"
}
},
"CF_AVERAGE_NUM": {
"description": "Number of sample used for average funciton",
"CTRL_HIGH_Z_15": {
"description": "ctrl highZ level",
"record_meta": true,
"initial": 8,
"initial": 1,
"value": [
2,
4,
6,
8
]
"On",
"Off"
],
"on_change": "set_ctrl_highZ"
},
"CV_E_INITIAL": {
"ADC_LEVEL_I_15": {
"description": "ADC level",
"record_meta": true,
"initial": 4,
"value": [
"0",
"1",
"2",
"3",
"auto"
],
"on_change": "set_adc_gain_I"
},
"ADC_LEVEL_V_IN_15": {
"description": "ADC level",
"record_meta": true,
"initial": 3,
"value": [
"0",
"1",
"2",
"auto"
],
"on_change": "set_adc_gain_Vin"
},
"VOLT_INITIAL": {
"description": "Initial Voltage of Scan",
"record_meta": true,
"initial": 25000,
@@ -285,8 +233,8 @@
"expression": "VALUE"
}
},
"CV_E1": {
"description": "First voltage of Scan",
"VOLT_MAX": {
"description": "Max Voltage of Scan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -296,8 +244,8 @@
"expression": "VALUE"
}
},
"CV_E2": {
"description": "Second voltage of Scan",
"VOLT_MIN": {
"description": "Min Voltage of Scan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -307,54 +255,27 @@
"expression": "VALUE"
}
},
"CV_SCAN_RATE": {
"description": "Voltage scan rate",
"CYCLE_NUMBER": {
"description": "CV cycle number",
"record_meta": true,
"initial": 10000,
"domain": [
100001
],
"value": {
"expression": "VALUE"
}
},
"CA_VOLT": {
"description": "Voltage of ca",
"record_meta": true,
"initial": 25000,
"domain": [
"VOLT_MAX"
],
"value": {
"expression": "VALUE"
}
},
"VT_MEASURE_VIN_RANGE": {
"description": "measure range of Vin",
"record_meta": true,
"initial": 0,
"value": [
"0",
"1",
"2",
"auto"
]
},
"RT_VOLT_SET": {
"description": "DAC output Voltage",
"record_meta": true,
"initial": 37500,
"initial": 1,
"domain": [
65536
],
"value": {
"expression": "VALUE"
},
"on_change": "set_para_RT_VOLT_SET"
}
},
"ADC_VALUE_I": {
"description": "ADC value current value",
"domain": "int"
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
"domain": [
"VOLT_MAX"
],
"value": {
"expression": "VALUE"
}
},
"BLE_WRITE": {
"description": "send msg to elite",
@@ -376,26 +297,25 @@
{
"expression": "MODE",
"when": {
"7": "idle",
"*": "start_data"
}
}
],
"idle": [
"_idle()"
],
"start_data": [
"data_format_cali",
"_notify(True)",
{
"expression": "MODE",
"when": {
"0": "set_general_hs_rtia",
"1": "set_general_lp_rtia",
"2": "set_general_lp_rtia",
"3": "set_general_lp_rtia",
"4": "set_general_lp_rtia",
"5": "set_general_hs_rtia"
"1": "set_adc_gain_I",
"2": "set_adc_gain_I"
}
},
{
"expression": "MODE",
"when": {
"1": "set_adc_gain_Vin",
"2": "set_adc_gain_Vin"
}
},
{
@@ -403,25 +323,14 @@
"when": {
"0": "curve_eis",
"1": "curve_cv3",
"2": "curve_ca",
"3": "curve_vt",
"4": "curve_rt",
"5": "curve_cf"
"2": "curve_const_vscan"
}
},
{
"expression": "MODE",
"when": {
"0": "curve_eis_para2",
"1": "curve_cv3_para2",
"5": "curve_cf_para2"
}
},
{
"expression": "MODE",
"when": {
"0": "curve_eis_mode",
"5": "curve_cf_mode"
"1": "curve_cv3_para2"
}
},
"_sync(True)",
@@ -441,18 +350,6 @@
"data_format_cali": [
"_data_format_cali('EISZeroOne')"
],
"set_general_hs_rtia": {
"type": "RIS",
"data": [
"1XFF;1X70;1B>GENERAL_HS_RTIA"
]
},
"set_general_lp_rtia": {
"type": "RIS",
"data": [
"1XFF;1X71;1B>GENERAL_LP_RTIA"
]
},
"set_sample_rate": {
"type": "RIS",
"parameter": {
@@ -462,172 +359,103 @@
"XE0;2B>va"
]
},
"set_adc_gain_I": {
"type": "RIS",
"data": [
"XE1;X05;B>ADC_LEVEL_I_15"
]
},
"set_adc_gain_Vin": {
"type": "RIS",
"data": [
"XE1;X06;B>ADC_LEVEL_V_IN_15"
]
},
"set_ctrl_highZ": {
"type": "RIS",
"data": [
"1XFF;1X72;1B>CTRL_HIGH_Z_15"
"XE1;X03;B>CTRL_HIGH_Z_15"
]
},
"curve_eis": {
"type": "RIS",
"parameter": {
"fa": "EIS_FREQ[0]",
"fb": "EIS_FREQ[1]",
"dp": "EIS_DELAY",
"dc": "EIS_DC_BIAS",
"am": "EIS_AC_AMP",
"an": "EIS_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "EIS_PPD",
"sp": "EIS_SCALE"
"fa": "FREQ[0]",
"fb": "FREQ[1]",
"dp": "DELAY",
"dc": "DC_BIAS",
"am": "AC_AMP",
"an": "AVERAGE_NUM",
"rt": "RTIA",
"pp": "PPD",
"sp": "SCALE"
},
"data": [
"1X12;1X01;4B>fa;4B>fb;2B>dp"
"1XD1;1X01;4B>fa;4B>fb;2B>dp"
]
},
"curve_eis_para2": {
"type": "RIS",
"parameter": {
"fa": "EIS_FREQ[0]",
"fb": "EIS_FREQ[1]",
"dp": "EIS_DELAY",
"dc": "EIS_DC_BIAS",
"am": "EIS_AC_AMP",
"an": "EIS_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "EIS_PPD",
"sp": "EIS_SCALE"
"fa": "FREQ[0]",
"fb": "FREQ[1]",
"dp": "DELAY",
"dc": "DC_BIAS",
"am": "AC_AMP",
"an": "AVERAGE_NUM",
"rt": "RTIA",
"pp": "PPD",
"sp": "SCALE"
},
"data": [
"1X12;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_eis_mode": {
"type": "RIS",
"data": [
"1X12;1XFF"
]
},
"curve_cf": {
"type": "RIS",
"parameter": {
"fa": "CF_FREQ",
"dp": "CF_DELAY",
"dc": "CF_DC_BIAS",
"am": "CF_AC_AMP",
"an": "CF_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "CF_PPD",
"sp": "CF_SCALE"
},
"data": [
"1X13;1X01;4B>fa;4B>0;2B>dp"
]
},
"curve_cf_para2": {
"type": "RIS",
"parameter": {
"fa": "CF_FREQ",
"dp": "CF_DELAY",
"dc": "CF_DC_BIAS",
"am": "CF_AC_AMP",
"an": "CF_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "CF_PPD",
"sp": "CF_SCALE"
},
"data": [
"1X13;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_cf_mode": {
"type": "RIS",
"data": [
"1X13;1XFF"
"1XD1;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_cv3": {
"type": "RIS",
"parameter": {
"va": "CV_E_INITIAL",
"vb": "CV_E1",
"vc": "CV_E2",
"ve": "CV_SCAN_RATE",
"va": "VOLT_INITIAL",
"vb": "VOLT_MAX",
"vc": "VOLT_MIN",
"ve": "Scan_Rate",
"vf": "SAMPLE_RATE",
"cn": "CYCLE_NUMBER"
},
"data": [
"1X09;1X01;2B>va;2B>vb;2B>vc;"
"1XD2;1X01;2B>va;2B>vb;2B>vc;"
]
},
"curve_cv3_para2": {
"type": "RIS",
"parameter": {
"va": "CV_E_INITIAL",
"vb": "CV_E1",
"vc": "CV_E2",
"ve": "CV_SCAN_RATE",
"va": "VOLT_INITIAL",
"vb": "VOLT_MAX",
"vc": "VOLT_MIN",
"ve": "Scan_Rate",
"vf": "SAMPLE_RATE",
"cn": "CYCLE_NUMBER"
},
"data": [
"1X09;1X02;4B>ve;2B>vf;2B>cn"
"1XD2;1X02;4B>ve;2B>vf;2B>cn"
]
},
"curve_ca": {
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"pa": "GENERAL_LP_RTIA",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE"
},
"data": [
"1X0B;",
"1XD3;",
"2B>va;",
"4b>pa;4b>0;",
"4b>pa;4b>pb;",
"4b>0;4b>pd;",
"2B>pe"
]
},
"curve_rt": {
"type": "RIS",
"parameter": {
"va": "RT_VOLT_SET",
"pa": "GENERAL_LP_RTIA",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE"
},
"data": [
"X04;",
"2B>va;",
"4b>pa;4b>0;",
"4b>0;4b>pd;",
"2B>pe"
]
},
"curve_vt": {
"type": "RIS",
"parameter": {
"pa": "GENERAL_LP_RTIA",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE",
"va": "VT_MEASURE_VIN_RANGE"
},
"data": [
"X05;",
"4b>pa;4b>0;",
"4b>0;4b>pd;",
"2B>pe;",
"1B>va"
]
},
"set_para_RT_VOLT_SET": {
"type": "RIS",
"data": [
"XE2;X01;2B>RT_VOLT_SET"
]
},
"ble_instru_send": [
"ble_write",
"_cdr('20X>ADC_VALUE_I')"
+179 -319
View File
@@ -9,7 +9,7 @@
"minor_version_number": 1
},
"constant": {
"FREQ_MAX": 13333334,
"FREQ_MAX": 4294967296,
"VOLT_MAX": 65536,
"BLE_WRITE_MAX": 255,
"TIME_MAX": 100000
@@ -26,44 +26,17 @@
"expression": "VALUE"
}
},
"HIGHZ_TABLE": {
"initial": [
1,
1,
1,
0,
1,
1,
1,
1
],
"domain": {
"list": [
100
]
},
"value": "VALUE"
},
"CTRL_HIGH_Z_15": {
"description": "ctrl highZ level",
"CHANNEL": {
"derzteription": "record channels",
"record_meta": true,
"initial": 1,
"value": [
"On",
"Off"
],
"on_change": "set_ctrl_highZ"
"domain": "property",
"value": "[0, 1, 2]"
},
"CYCLE_NUMBER": {
"description": "CV cycle number",
"CHANNEL_LABEL": {
"description": "channel label",
"record_meta": true,
"initial": 1,
"domain": [
65536
],
"value": {
"expression": "VALUE"
}
"domain": "property",
"value": "['current', 'voltage', 'impedance']"
},
"SAMPLE_RATE": {
"description": "data sampling rate",
@@ -77,12 +50,6 @@
},
"on_change": "set_sample_rate"
},
"CHANNEL": {
"derzteription": "record channels",
"record_meta": true,
"domain": "property",
"value": "[0, 1, 2]"
},
"AMP_GAIN": {
"description": "amp gain",
"record_meta": true,
@@ -97,66 +64,14 @@
"Cyclic Voltammetry",
"Chronoamperometric",
"V-T Graph",
"R-T Graph",
"EIS constant frequency",
"Dev Mode",
"Idle"
"Dev Mode"
]
},
"GENERAL_HS_RTIA": {
"description": "High speed rtia gain",
"record_meta": true,
"initial": 8,
"value": [
0,
1,
2,
3,
4,
5,
6,
7,
8
],
"on_change": "set_general_hs_rtia"
},
"GENERAL_LP_RTIA": {
"description": "Low power rtia gain",
"record_meta": true,
"initial": 4,
"value": [
"0",
"1",
"2",
"3",
"auto"
],
"on_change": "set_general_lp_rtia"
},
"EIS_DC_BIAS": {
"description": "DC voltage bias",
"record_meta": true,
"initial": 25000,
"domain": [
"VOLT_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_AC_AMP": {
"description": "AC Amplitude",
"record_meta": true,
"initial": 26,
"domain": [
2048
]
},
"EIS_FREQ": {
"description": "[start, stop] of frequency scan",
"FREQ": {
"description": "DPV current recording period start",
"record_meta": true,
"initial": [
13333333,
13422819,
7
],
"domain": {
@@ -166,24 +81,29 @@
},
"value": "VALUE"
},
"EIS_PPD": {
"description": "Point per decades",
"FREQ_START": {
"description": "Start of Freq Scan",
"record_meta": true,
"initial": 10,
"initial": 13422819,
"domain": [
11
]
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_SCALE": {
"description": "Point spacing pattern",
"FREQ_STOP": {
"description": "End of Freq Scan",
"record_meta": true,
"initial": 0,
"value": [
0,
1
]
"initial": 7,
"domain": [
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_DELAY": {
"DELAY": {
"description": "Wait x peroid before start taking measurements",
"record_meta": true,
"initial": 0,
@@ -194,19 +114,19 @@
"expression": "VALUE"
}
},
"EIS_AVERAGE_NUM": {
"AVERAGE_NUM": {
"description": "Number of sample used for average funciton",
"record_meta": true,
"initial": 8,
"value": [
2,
4,
6,
8
8,
16
]
},
"CF_DC_BIAS": {
"description": "DC voltage bias",
"DC_BIAS": {
"description": "DC voltage bias in mV",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -216,34 +136,15 @@
"expression": "VALUE"
}
},
"CF_AC_AMP": {
"description": "AC Amplitude",
"AC_AMP": {
"description": "AC Amplitude in mV",
"record_meta": true,
"initial": 26,
"initial": 25,
"domain": [
2048
]
},
"CF_FREQ": {
"description": "frequency of cf",
"record_meta": true,
"initial": 13333333,
"domain": [
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"CF_PPD": {
"description": "Point per decades",
"record_meta": true,
"initial": 10,
"domain": [
11
]
},
"CF_SCALE": {
"SCALE": {
"description": "Point spacing pattern",
"record_meta": true,
"initial": 0,
@@ -252,29 +153,77 @@
1
]
},
"CF_DELAY": {
"description": "Wait x peroid before start taking measurements",
"PPD": {
"description": "Point per decades",
"record_meta": true,
"initial": 0,
"initial": 10,
"domain": [
101
11
]
},
"RTIA": {
"description": "High speed tia gain",
"record_meta": true,
"initial": 4,
"value": [
0,
1,
2,
3,
4
]
},
"ADC_VALUE_I": {
"description": "ADC value current value",
"domain": "int"
},
"Scan_Rate": {
"description": "Voltage Scan Rate",
"record_meta": true,
"initial": 10000,
"domain": [
100001
],
"value": {
"expression": "VALUE"
}
},
"CF_AVERAGE_NUM": {
"description": "Number of sample used for average funciton",
"CTRL_HIGH_Z_15": {
"description": "ctrl highZ level",
"record_meta": true,
"initial": 8,
"initial": 1,
"value": [
2,
4,
6,
8
]
"On",
"Off"
],
"on_change": "set_ctrl_highZ"
},
"CV_E_INITIAL": {
"ADC_LEVEL_I_15": {
"description": "ADC level",
"record_meta": true,
"initial": 4,
"value": [
"0",
"1",
"2",
"3",
"auto"
],
"on_change": "set_adc_gain_I"
},
"ADC_LEVEL_V_IN_15": {
"description": "ADC level",
"record_meta": true,
"initial": 3,
"value": [
"0",
"1",
"2",
"auto"
],
"on_change": "set_adc_gain_Vin"
},
"VOLT_INITIAL": {
"description": "Initial Voltage of Scan",
"record_meta": true,
"initial": 25000,
@@ -285,8 +234,8 @@
"expression": "VALUE"
}
},
"CV_E1": {
"description": "First voltage of Scan",
"VOLT_MAX": {
"description": "Max Voltage of Scan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -296,8 +245,8 @@
"expression": "VALUE"
}
},
"CV_E2": {
"description": "Second voltage of Scan",
"VOLT_MIN": {
"description": "Min Voltage of Scan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -307,19 +256,19 @@
"expression": "VALUE"
}
},
"CV_SCAN_RATE": {
"description": "Voltage scan rate",
"CYCLE_NUMBER": {
"description": "CV cycle number",
"record_meta": true,
"initial": 10000,
"initial": 1,
"domain": [
100001
65536
],
"value": {
"expression": "VALUE"
}
},
"CA_VOLT": {
"description": "Voltage of ca",
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -329,7 +278,7 @@
"expression": "VALUE"
}
},
"VT_MEASURE_VIN_RANGE": {
"MEASURE_VIN_RANGE": {
"description": "measure range of Vin",
"record_meta": true,
"initial": 0,
@@ -340,22 +289,6 @@
"auto"
]
},
"RT_VOLT_SET": {
"description": "DAC output Voltage",
"record_meta": true,
"initial": 37500,
"domain": [
65536
],
"value": {
"expression": "VALUE"
},
"on_change": "set_para_RT_VOLT_SET"
},
"ADC_VALUE_I": {
"description": "ADC value current value",
"domain": "int"
},
"BLE_WRITE": {
"description": "send msg to elite",
"domain": {
@@ -376,26 +309,27 @@
{
"expression": "MODE",
"when": {
"7": "idle",
"*": "start_data"
}
}
],
"idle": [
"_idle()"
],
"start_data": [
"data_format_cali",
"_notify(True)",
{
"expression": "MODE",
"when": {
"0": "set_general_hs_rtia",
"1": "set_general_lp_rtia",
"2": "set_general_lp_rtia",
"3": "set_general_lp_rtia",
"4": "set_general_lp_rtia",
"5": "set_general_hs_rtia"
"1": "set_adc_gain_I",
"2": "set_adc_gain_I",
"3": "set_adc_gain_I"
}
},
{
"expression": "MODE",
"when": {
"1": "set_adc_gain_Vin",
"2": "set_adc_gain_Vin",
"3": "set_adc_gain_Vin"
}
},
{
@@ -403,25 +337,15 @@
"when": {
"0": "curve_eis",
"1": "curve_cv3",
"2": "curve_ca",
"3": "curve_vt",
"4": "curve_rt",
"5": "curve_cf"
"2": "curve_const_vscan",
"3": "curve_vt"
}
},
{
"expression": "MODE",
"when": {
"0": "curve_eis_para2",
"1": "curve_cv3_para2",
"5": "curve_cf_para2"
}
},
{
"expression": "MODE",
"when": {
"0": "curve_eis_mode",
"5": "curve_cf_mode"
"1": "curve_cv3_para2"
}
},
"_sync(True)",
@@ -441,18 +365,6 @@
"data_format_cali": [
"_data_format_cali('EISZeroOne')"
],
"set_general_hs_rtia": {
"type": "RIS",
"data": [
"1XFF;1X70;1B>GENERAL_HS_RTIA"
]
},
"set_general_lp_rtia": {
"type": "RIS",
"data": [
"1XFF;1X71;1B>GENERAL_LP_RTIA"
]
},
"set_sample_rate": {
"type": "RIS",
"parameter": {
@@ -462,146 +374,99 @@
"XE0;2B>va"
]
},
"set_adc_gain_I": {
"type": "RIS",
"data": [
"XE1;X05;B>ADC_LEVEL_I_15"
]
},
"set_adc_gain_Vin": {
"type": "RIS",
"data": [
"XE1;X06;B>ADC_LEVEL_V_IN_15"
]
},
"set_ctrl_highZ": {
"type": "RIS",
"data": [
"1XFF;1X72;1B>CTRL_HIGH_Z_15"
"XE1;X03;B>CTRL_HIGH_Z_15"
]
},
"curve_eis": {
"type": "RIS",
"parameter": {
"fa": "EIS_FREQ[0]",
"fb": "EIS_FREQ[1]",
"dp": "EIS_DELAY",
"dc": "EIS_DC_BIAS",
"am": "EIS_AC_AMP",
"an": "EIS_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "EIS_PPD",
"sp": "EIS_SCALE"
"fa": "FREQ[0]",
"fb": "FREQ[1]",
"dp": "DELAY",
"dc": "DC_BIAS",
"am": "AC_AMP",
"an": "AVERAGE_NUM",
"rt": "RTIA",
"pp": "PPD",
"sp": "SCALE"
},
"data": [
"1X12;1X01;4B>fa;4B>fb;2B>dp"
"1XD1;1X01;4B>fa;4B>fb;2B>dp"
]
},
"curve_eis_para2": {
"type": "RIS",
"parameter": {
"fa": "EIS_FREQ[0]",
"fb": "EIS_FREQ[1]",
"dp": "EIS_DELAY",
"dc": "EIS_DC_BIAS",
"am": "EIS_AC_AMP",
"an": "EIS_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "EIS_PPD",
"sp": "EIS_SCALE"
"fa": "FREQ[0]",
"fb": "FREQ[1]",
"dp": "DELAY",
"dc": "DC_BIAS",
"am": "AC_AMP",
"an": "AVERAGE_NUM",
"rt": "RTIA",
"pp": "PPD",
"sp": "SCALE"
},
"data": [
"1X12;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_eis_mode": {
"type": "RIS",
"data": [
"1X12;1XFF"
]
},
"curve_cf": {
"type": "RIS",
"parameter": {
"fa": "CF_FREQ",
"dp": "CF_DELAY",
"dc": "CF_DC_BIAS",
"am": "CF_AC_AMP",
"an": "CF_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "CF_PPD",
"sp": "CF_SCALE"
},
"data": [
"1X13;1X01;4B>fa;4B>0;2B>dp"
]
},
"curve_cf_para2": {
"type": "RIS",
"parameter": {
"fa": "CF_FREQ",
"dp": "CF_DELAY",
"dc": "CF_DC_BIAS",
"am": "CF_AC_AMP",
"an": "CF_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "CF_PPD",
"sp": "CF_SCALE"
},
"data": [
"1X13;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_cf_mode": {
"type": "RIS",
"data": [
"1X13;1XFF"
"1XD1;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_cv3": {
"type": "RIS",
"parameter": {
"va": "CV_E_INITIAL",
"vb": "CV_E1",
"vc": "CV_E2",
"ve": "CV_SCAN_RATE",
"va": "VOLT_INITIAL",
"vb": "VOLT_MAX",
"vc": "VOLT_MIN",
"ve": "Scan_Rate",
"vf": "SAMPLE_RATE",
"cn": "CYCLE_NUMBER"
},
"data": [
"1X09;1X01;2B>va;2B>vb;2B>vc;"
"1XD2;1X01;2B>va;2B>vb;2B>vc;"
]
},
"curve_cv3_para2": {
"type": "RIS",
"parameter": {
"va": "CV_E_INITIAL",
"vb": "CV_E1",
"vc": "CV_E2",
"ve": "CV_SCAN_RATE",
"va": "VOLT_INITIAL",
"vb": "VOLT_MAX",
"vc": "VOLT_MIN",
"ve": "Scan_Rate",
"vf": "SAMPLE_RATE",
"cn": "CYCLE_NUMBER"
},
"data": [
"1X09;1X02;4B>ve;2B>vf;2B>cn"
"1XD2;1X02;4B>ve;2B>vf;2B>cn"
]
},
"curve_ca": {
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"pa": "GENERAL_LP_RTIA",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE"
},
"data": [
"1X0B;",
"1XD3;",
"2B>va;",
"4b>pa;4b>0;",
"4b>0;4b>pd;",
"2B>pe"
]
},
"curve_rt": {
"type": "RIS",
"parameter": {
"va": "RT_VOLT_SET",
"pa": "GENERAL_LP_RTIA",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE"
},
"data": [
"X04;",
"2B>va;",
"4b>pa;4b>0;",
"4b>pa;4b>pb;",
"4b>0;4b>pd;",
"2B>pe"
]
@@ -609,25 +474,20 @@
"curve_vt": {
"type": "RIS",
"parameter": {
"pa": "GENERAL_LP_RTIA",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE",
"va": "VT_MEASURE_VIN_RANGE"
"va": "MEASURE_VIN_RANGE"
},
"data": [
"X05;",
"4b>pa;4b>0;",
"4b>pa;4b>pb;",
"4b>0;4b>pd;",
"2B>pe;",
"1B>va"
]
},
"set_para_RT_VOLT_SET": {
"type": "RIS",
"data": [
"XE2;X01;2B>RT_VOLT_SET"
]
},
"ble_instru_send": [
"ble_write",
"_cdr('20X>ADC_VALUE_I')"
@@ -9,7 +9,7 @@
"minor_version_number": 2
},
"constant": {
"FREQ_MAX": 13333334,
"FREQ_MAX": 4294967296,
"VOLT_MAX": 65536,
"BLE_WRITE_MAX": 255,
"TIME_MAX": 100000
@@ -26,44 +26,17 @@
"expression": "VALUE"
}
},
"HIGHZ_TABLE": {
"initial": [
1,
1,
1,
0,
1,
1,
1,
1
],
"domain": {
"list": [
100
]
},
"value": "VALUE"
},
"CTRL_HIGH_Z_15": {
"description": "ctrl highZ level",
"CHANNEL": {
"derzteription": "record channels",
"record_meta": true,
"initial": 1,
"value": [
"On",
"Off"
],
"on_change": "set_ctrl_highZ"
"domain": "property",
"value": "[0, 1, 2]"
},
"CYCLE_NUMBER": {
"description": "CV cycle number",
"CHANNEL_LABEL": {
"description": "channel label",
"record_meta": true,
"initial": 1,
"domain": [
65536
],
"value": {
"expression": "VALUE"
}
"domain": "property",
"value": "['current', 'voltage', 'impedance']"
},
"SAMPLE_RATE": {
"description": "data sampling rate",
@@ -77,12 +50,6 @@
},
"on_change": "set_sample_rate"
},
"CHANNEL": {
"derzteription": "record channels",
"record_meta": true,
"domain": "property",
"value": "[0, 1, 2]"
},
"AMP_GAIN": {
"description": "amp gain",
"record_meta": true,
@@ -97,63 +64,11 @@
"Cyclic Voltammetry",
"Chronoamperometric",
"V-T Graph",
"R-T Graph",
"EIS constant frequency",
"Dev Mode",
"Idle"
"Dev Mode"
]
},
"GENERAL_HS_RTIA": {
"description": "High speed rtia gain",
"record_meta": true,
"initial": 8,
"value": [
0,
1,
2,
3,
4,
5,
6,
7,
8
],
"on_change": "set_general_hs_rtia"
},
"GENERAL_LP_RTIA": {
"description": "Low power rtia gain",
"record_meta": true,
"initial": 4,
"value": [
"0",
"1",
"2",
"3",
"auto"
],
"on_change": "set_general_lp_rtia"
},
"EIS_DC_BIAS": {
"description": "DC voltage bias",
"record_meta": true,
"initial": 25000,
"domain": [
"VOLT_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_AC_AMP": {
"description": "AC Amplitude",
"record_meta": true,
"initial": 26,
"domain": [
2048
]
},
"EIS_FREQ": {
"description": "[start, stop] of frequency scan",
"FREQ": {
"description": "DPV current recording period start",
"record_meta": true,
"initial": [
13333333,
@@ -166,24 +81,29 @@
},
"value": "VALUE"
},
"EIS_PPD": {
"description": "Point per decades",
"FREQ_START": {
"description": "Start of Freq Scan",
"record_meta": true,
"initial": 10,
"initial": 13422819,
"domain": [
11
]
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_SCALE": {
"description": "Point spacing pattern",
"FREQ_STOP": {
"description": "End of Freq Scan",
"record_meta": true,
"initial": 0,
"value": [
0,
1
]
"initial": 7,
"domain": [
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"EIS_DELAY": {
"DELAY": {
"description": "Wait x peroid before start taking measurements",
"record_meta": true,
"initial": 0,
@@ -194,19 +114,19 @@
"expression": "VALUE"
}
},
"EIS_AVERAGE_NUM": {
"AVERAGE_NUM": {
"description": "Number of sample used for average funciton",
"record_meta": true,
"initial": 8,
"value": [
2,
4,
6,
8
8,
16
]
},
"CF_DC_BIAS": {
"description": "DC voltage bias",
"DC_BIAS": {
"description": "DC voltage bias in mV",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -216,34 +136,15 @@
"expression": "VALUE"
}
},
"CF_AC_AMP": {
"description": "AC Amplitude",
"AC_AMP": {
"description": "AC Amplitude in mV",
"record_meta": true,
"initial": 26,
"initial": 25,
"domain": [
2048
]
},
"CF_FREQ": {
"description": "frequency of cf",
"record_meta": true,
"initial": 13333333,
"domain": [
"FREQ_MAX"
],
"value": {
"expression": "VALUE"
}
},
"CF_PPD": {
"description": "Point per decades",
"record_meta": true,
"initial": 10,
"domain": [
11
]
},
"CF_SCALE": {
"SCALE": {
"description": "Point spacing pattern",
"record_meta": true,
"initial": 0,
@@ -252,29 +153,77 @@
1
]
},
"CF_DELAY": {
"description": "Wait x peroid before start taking measurements",
"PPD": {
"description": "Point per decades",
"record_meta": true,
"initial": 0,
"initial": 10,
"domain": [
101
11
]
},
"RTIA": {
"description": "High speed tia gain",
"record_meta": true,
"initial": 4,
"value": [
0,
1,
2,
3,
4
]
},
"ADC_VALUE_I": {
"description": "ADC value current value",
"domain": "int"
},
"Scan_Rate": {
"description": "Voltage Scan Rate",
"record_meta": true,
"initial": 10000,
"domain": [
100001
],
"value": {
"expression": "VALUE"
}
},
"CF_AVERAGE_NUM": {
"description": "Number of sample used for average funciton",
"CTRL_HIGH_Z_15": {
"description": "ctrl highZ level",
"record_meta": true,
"initial": 8,
"initial": 1,
"value": [
2,
4,
6,
8
]
"On",
"Off"
],
"on_change": "set_ctrl_highZ"
},
"CV_E_INITIAL": {
"ADC_LEVEL_I_15": {
"description": "ADC level",
"record_meta": true,
"initial": 4,
"value": [
"0",
"1",
"2",
"3",
"auto"
],
"on_change": "set_adc_gain_I"
},
"ADC_LEVEL_V_IN_15": {
"description": "ADC level",
"record_meta": true,
"initial": 3,
"value": [
"0",
"1",
"2",
"auto"
],
"on_change": "set_adc_gain_Vin"
},
"VOLT_INITIAL": {
"description": "Initial Voltage of Scan",
"record_meta": true,
"initial": 25000,
@@ -285,8 +234,8 @@
"expression": "VALUE"
}
},
"CV_E1": {
"description": "First voltage of Scan",
"VOLT_MAX": {
"description": "Max Voltage of Scan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -296,8 +245,8 @@
"expression": "VALUE"
}
},
"CV_E2": {
"description": "Second voltage of Scan",
"VOLT_MIN": {
"description": "Min Voltage of Scan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -307,19 +256,19 @@
"expression": "VALUE"
}
},
"CV_SCAN_RATE": {
"description": "Voltage scan rate",
"CYCLE_NUMBER": {
"description": "CV cycle number",
"record_meta": true,
"initial": 10000,
"initial": 1,
"domain": [
100001
65536
],
"value": {
"expression": "VALUE"
}
},
"CA_VOLT": {
"description": "Voltage of ca",
"VOLT_VSCAN": {
"description": "Voltage of VScan",
"record_meta": true,
"initial": 25000,
"domain": [
@@ -329,7 +278,7 @@
"expression": "VALUE"
}
},
"VT_MEASURE_VIN_RANGE": {
"MEASURE_VIN_RANGE": {
"description": "measure range of Vin",
"record_meta": true,
"initial": 0,
@@ -340,22 +289,6 @@
"auto"
]
},
"RT_VOLT_SET": {
"description": "DAC output Voltage",
"record_meta": true,
"initial": 37500,
"domain": [
65536
],
"value": {
"expression": "VALUE"
},
"on_change": "set_para_RT_VOLT_SET"
},
"ADC_VALUE_I": {
"description": "ADC value current value",
"domain": "int"
},
"BLE_WRITE": {
"description": "send msg to elite",
"domain": {
@@ -376,26 +309,27 @@
{
"expression": "MODE",
"when": {
"7": "idle",
"*": "start_data"
}
}
],
"idle": [
"_idle()"
],
"start_data": [
"data_format_cali",
"_notify(True)",
{
"expression": "MODE",
"when": {
"0": "set_general_hs_rtia",
"1": "set_general_lp_rtia",
"2": "set_general_lp_rtia",
"3": "set_general_lp_rtia",
"4": "set_general_lp_rtia",
"5": "set_general_hs_rtia"
"1": "set_adc_gain_I",
"2": "set_adc_gain_I",
"3": "set_adc_gain_I"
}
},
{
"expression": "MODE",
"when": {
"1": "set_adc_gain_Vin",
"2": "set_adc_gain_Vin",
"3": "set_adc_gain_Vin"
}
},
{
@@ -403,25 +337,15 @@
"when": {
"0": "curve_eis",
"1": "curve_cv3",
"2": "curve_ca",
"3": "curve_vt",
"4": "curve_rt",
"5": "curve_cf"
"2": "curve_const_vscan",
"3": "curve_vt"
}
},
{
"expression": "MODE",
"when": {
"0": "curve_eis_para2",
"1": "curve_cv3_para2",
"5": "curve_cf_para2"
}
},
{
"expression": "MODE",
"when": {
"0": "curve_eis_mode",
"5": "curve_cf_mode"
"1": "curve_cv3_para2"
}
},
"_sync(True)",
@@ -441,18 +365,6 @@
"data_format_cali": [
"_data_format_cali('EISZeroOne')"
],
"set_general_hs_rtia": {
"type": "RIS",
"data": [
"1XFF;1X70;1B>GENERAL_HS_RTIA"
]
},
"set_general_lp_rtia": {
"type": "RIS",
"data": [
"1XFF;1X71;1B>GENERAL_LP_RTIA"
]
},
"set_sample_rate": {
"type": "RIS",
"parameter": {
@@ -462,146 +374,99 @@
"XE0;2B>va"
]
},
"set_adc_gain_I": {
"type": "RIS",
"data": [
"XE1;X05;B>ADC_LEVEL_I_15"
]
},
"set_adc_gain_Vin": {
"type": "RIS",
"data": [
"XE1;X06;B>ADC_LEVEL_V_IN_15"
]
},
"set_ctrl_highZ": {
"type": "RIS",
"data": [
"1XFF;1X72;1B>CTRL_HIGH_Z_15"
"XE1;X03;B>CTRL_HIGH_Z_15"
]
},
"curve_eis": {
"type": "RIS",
"parameter": {
"fa": "EIS_FREQ[0]",
"fb": "EIS_FREQ[1]",
"dp": "EIS_DELAY",
"dc": "EIS_DC_BIAS",
"am": "EIS_AC_AMP",
"an": "EIS_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "EIS_PPD",
"sp": "EIS_SCALE"
"fa": "FREQ[0]",
"fb": "FREQ[1]",
"dp": "DELAY",
"dc": "DC_BIAS",
"am": "AC_AMP",
"an": "AVERAGE_NUM",
"rt": "RTIA",
"pp": "PPD",
"sp": "SCALE"
},
"data": [
"1X12;1X01;4B>fa;4B>fb;2B>dp"
"1XD1;1X01;4B>fa;4B>fb;2B>dp"
]
},
"curve_eis_para2": {
"type": "RIS",
"parameter": {
"fa": "EIS_FREQ[0]",
"fb": "EIS_FREQ[1]",
"dp": "EIS_DELAY",
"dc": "EIS_DC_BIAS",
"am": "EIS_AC_AMP",
"an": "EIS_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "EIS_PPD",
"sp": "EIS_SCALE"
"fa": "FREQ[0]",
"fb": "FREQ[1]",
"dp": "DELAY",
"dc": "DC_BIAS",
"am": "AC_AMP",
"an": "AVERAGE_NUM",
"rt": "RTIA",
"pp": "PPD",
"sp": "SCALE"
},
"data": [
"1X12;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_eis_mode": {
"type": "RIS",
"data": [
"1X12;1XFF"
]
},
"curve_cf": {
"type": "RIS",
"parameter": {
"fa": "CF_FREQ",
"dp": "CF_DELAY",
"dc": "CF_DC_BIAS",
"am": "CF_AC_AMP",
"an": "CF_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "CF_PPD",
"sp": "CF_SCALE"
},
"data": [
"1X13;1X01;4B>fa;4B>0;2B>dp"
]
},
"curve_cf_para2": {
"type": "RIS",
"parameter": {
"fa": "CF_FREQ",
"dp": "CF_DELAY",
"dc": "CF_DC_BIAS",
"am": "CF_AC_AMP",
"an": "CF_AVERAGE_NUM",
"rt": "GENERAL_HS_RTIA",
"pp": "CF_PPD",
"sp": "CF_SCALE"
},
"data": [
"1X13;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_cf_mode": {
"type": "RIS",
"data": [
"1X13;1XFF"
"1XD1;1X02;2B>dc;2B>am;B>an;B>rt;2B>pp;B>sp"
]
},
"curve_cv3": {
"type": "RIS",
"parameter": {
"va": "CV_E_INITIAL",
"vb": "CV_E1",
"vc": "CV_E2",
"ve": "CV_SCAN_RATE",
"va": "VOLT_INITIAL",
"vb": "VOLT_MAX",
"vc": "VOLT_MIN",
"ve": "Scan_Rate",
"vf": "SAMPLE_RATE",
"cn": "CYCLE_NUMBER"
},
"data": [
"1X09;1X01;2B>va;2B>vb;2B>vc;"
"1XD2;1X01;2B>va;2B>vb;2B>vc;"
]
},
"curve_cv3_para2": {
"type": "RIS",
"parameter": {
"va": "CV_E_INITIAL",
"vb": "CV_E1",
"vc": "CV_E2",
"ve": "CV_SCAN_RATE",
"va": "VOLT_INITIAL",
"vb": "VOLT_MAX",
"vc": "VOLT_MIN",
"ve": "Scan_Rate",
"vf": "SAMPLE_RATE",
"cn": "CYCLE_NUMBER"
},
"data": [
"1X09;1X02;4B>ve;2B>vf;2B>cn"
"1XD2;1X02;4B>ve;2B>vf;2B>cn"
]
},
"curve_ca": {
"curve_const_vscan": {
"type": "RIS",
"parameter": {
"va": "CA_VOLT",
"pa": "GENERAL_LP_RTIA",
"va": "VOLT_VSCAN",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE"
},
"data": [
"1X0B;",
"1XD3;",
"2B>va;",
"4b>pa;4b>0;",
"4b>0;4b>pd;",
"2B>pe"
]
},
"curve_rt": {
"type": "RIS",
"parameter": {
"va": "RT_VOLT_SET",
"pa": "GENERAL_LP_RTIA",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE"
},
"data": [
"X04;",
"2B>va;",
"4b>pa;4b>0;",
"4b>pa;4b>pb;",
"4b>0;4b>pd;",
"2B>pe"
]
@@ -609,25 +474,20 @@
"curve_vt": {
"type": "RIS",
"parameter": {
"pa": "GENERAL_LP_RTIA",
"pa": "ADC_LEVEL_I_15",
"pb": "ADC_LEVEL_V_IN_15",
"pd": "CTRL_HIGH_Z_15",
"pe": "SAMPLE_RATE",
"va": "VT_MEASURE_VIN_RANGE"
"va": "MEASURE_VIN_RANGE"
},
"data": [
"X05;",
"4b>pa;4b>0;",
"4b>pa;4b>pb;",
"4b>0;4b>pd;",
"2B>pe;",
"1B>va"
]
},
"set_para_RT_VOLT_SET": {
"type": "RIS",
"data": [
"XE2;X01;2B>RT_VOLT_SET"
]
},
"ble_instru_send": [
"ble_write",
"_cdr('20X>ADC_VALUE_I')"
@@ -2,27 +2,16 @@
"name": "Elite_TRIG_0.1",
"version": "1.2.30",
"match_rule": {
"local_name_pattern": "Elite.*",
"local_name_pattern": "Trigger.*",
"major_product_number": 0,
"minor_product_number": 5,
"major_version_number": 1,
"minor_version_number": 0
},
"constant": {
"TIME_MAX": 100000
},
"parameters": {
"TIME_DURATION": {
"description": "timer",
"record_meta": true,
"initial": 0,
"domain": [
"TIME_MAX"
],
"value": {
"expression": "VALUE"
}
},
"ACC_a_out0": {
"description": "Switch of analog current channel 1",
"record_meta": true,
@@ -153,8 +142,7 @@
"description": "working mode",
"record_meta": true,
"value": [
"Analog Current Control (ACC)",
"Idle"
"Analog Current Control (ACC)"
]
},
-38
View File
@@ -1,38 +0,0 @@
#!/bin/bash
# install python module numpy
sudo apt-get install libatlas-base-dev
sudo apt-get install python3-numpy
# install python module SQLAlchemy
pip3 install SQLAlchemy
# create folder to save project logger
mkdir -p /home/pi/logger/project
# add column cycle in projects
sudo su -c "psql -d postgres -c \"ALTER TABLE projects ADD COLUMN IF NOT EXISTS cycle JSONB;\"" postgres
# add column project in recording_data_metas
sudo su -c "psql -d postgres -c \"ALTER TABLE recording_data_metas ADD COLUMN IF NOT EXISTS project Int4;\"" postgres
# remove default controller info
sudo su -c "psql -d postgres -c \"DELETE FROM controllers WHERE name='WTP_NONE';\"" postgres
# change table name from meta_project_info to project_metas
sudo su -c "psql -d postgres -c \"ALTER TABLE IF EXISTS meta_project_info RENAME TO project_metas;\"" postgres
# change table name from project_report to project_reports
sudo su -c "psql -d postgres -c \"ALTER TABLE IF EXISTS project_report RENAME TO project_reports;\"" postgres
# change table project_meta column cycle to type jsonb
sudo su -c "psql -d postgres -c \"ALTER TABLE project_metas ALTER COLUMN cycle type jsonb USING (cycle::jsonb);\"" postgres
# drop column calibration default
sudo su -c "psql -d postgres -c \"ALTER TABLE devices ALTER COLUMN calibration DROP DEFAULT;\"" postgres
# drop column calibration default
sudo su -c "psql -d postgres -c \"ALTER TABLE devices ALTER COLUMN calibration TYPE bytea USING calibration::bytea;\"" postgres
# add column project in recording_data_metas
sudo su -c "psql -d postgres -c \"ALTER TABLE devices ADD COLUMN IF NOT EXISTS calibration_version Int4 DEFAULT -1;\"" postgres