[update] update eis decoder code

.gitignore

@@ -1,5 +1,7 @@
 .DS_Store
 *.cpython-37.opt-2.pyc
+*.cpython-39-arm-linux-gnueabihf.so
+*.
 *.pyc
 */__pycache__
 /.vscode

python/biopro/devlib/data.py

@@ -1401,39 +1401,33 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
             hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             #Lv[1] 20k
             index = 80
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
             hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             #Lv[2] 5k
             index = 100
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
             hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             #Lv[3] 200R
             index = 120
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
             hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             # hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0])
             # hsrtia_b.append(struct.unpack('>I', cali_coeff[index+5:index+9])[0]/1e6)
             # hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e5)
-            # hsrtia_d.append(struct.unpack('>I', cali_coeff[index+13:index+17])[0]/1e6)
 
             # print('cutoff_freq', cutoff_freq)
             # print('hsrtia_a', hsrtia_a)
             # print('hsrtia_b', hsrtia_b)
             # print('hsrtia_c', hsrtia_c)
-            # print('hsrtia_d', hsrtia_d)
             # print('phase_para_a', phase_para_a)
             # print('phase_para_b', phase_para_b)
 
@@ -1590,10 +1584,10 @@ class EISZeroOneDataDecoder(RecDataDecoder):
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
         if (self._mode == 0):                           #EIS Mode
-            ret.append_data(3, cycle_number)
             ret.append_data(0, ch1)                     #Raw Imag  
             ret.append_data(1, ch2)                     #Raw Real
             ret.append_data(2, ch3 * 10)                #Frequency [mHz]
+            ret.append_data(3, cycle_number)
             ret.append_data(4, round(imag_after_cal))   #Z_imag [Ohm]
             ret.append_data(5, round(real_after_cal))   #Z_real [Ohm]
             ret.append_data(6, round(impedance))        #Impedance [Ohm]
@@ -1602,10 +1596,10 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             ret.append_data(9, gain)                    #Gain Level
 
         else:                                           #CV Mode
-            ret.append_data(3, cycle_number)
             ret.append_data(0, ch1)                     #Iin     [nA]
             ret.append_data(1, ch2)                     #Vset    [nV]
             ret.append_data(2, ch3)                     #Vout    [nV]
+            ret.append_data(3, cycle_number)
 
         if cycle_number != self._cycle_number:
             # notify cycle_number change

python/biopro/devlib/device.py

@@ -653,15 +653,9 @@ class DeviceInstruction:
 
     VIS_CC_ZERO = 0x40
 
-    VIS_ASK = 0x30
-    """ask in virtual instruction"""
-
     VIS_STI = 0xC0
     """stimulation on virtual instruction"""
 
-    VIS_FUH = 0x90
-    """flush virtual instruction"""
-
     VIS_INT = 0x60
     """interrupt virtual instruction"""
 
@@ -750,8 +744,6 @@ class DeviceCommonInstruction:
             return '_sync(False)', '_notify(False)', 'VIS_INT'
         elif instruction == cls.CLOSE:
             return '_sync(False)', '_notify(False)', 'VIS_INT'
-        elif instruction == cls.FLUSH:
-            return 'VIS_FUH',
         elif instruction == cls.CALL:
             return 'VIS_CAL',
         elif instruction == cls.VIS_DEVICE_DETECT:

python/biopro/devlib/library.py

@@ -1012,6 +1012,10 @@ class CompletedDevice(Device):
     def device_id(self) -> int:
         return self._device_id
 
+    @property
+    def memory_board(self) -> int:
+        return self._device_id
+
     @property
     def device_name(self) -> str:
         return self._device.device_name
@@ -1274,15 +1278,20 @@ class CompletedDevice(Device):
 
     def as_json(self) -> JSON_OBJECT:
         return {
+            'id': self.device_id,
+            'name': self.device_name,
+            'status': self._status,
             'device_id':       self.device_id,
             'device_name':     self.device_name,
             'device_address':  list(self.mac_address),
             'device_status': self._status,
+            'mac_address': self.mac_address_in_str,
+            'memory_board': self.memory_board,
+            'serial_number':   self.serial_number.as_json(),
+            'version':  self.device_version,
             'battery':         self.battery,
             'parent':          self.parent,
             'recording_file_name':      self.recording_file_name,
-            'device_version':  self.device_version,
-            'serial_number':   self.serial_number.as_json(),
             'library_name':    self._library.name,
             'library_version': str(self._library.version),
             'configuration':   self.configuration.as_json(list_hide=True),

python/biopro/impl/ext_mem.py

@@ -76,6 +76,8 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
     def set_pin_mem_req(self, value: bool):
         channel = self.select
+        # if self._pin_mem_req_value[channel] == value:
+        #     print('last_req_sig[channel] == value', channel, self._pin_mem_req_value[channel], value, datetime.now())
         self.pin_mem_req.output(value)
         self._pin_mem_req_value[channel] = value
 

python/biopro/impl/selector.py

@@ -118,13 +118,13 @@ class Selector:
         self._p2.output(p[2])
 
         # if (value == 4 and self._last_sel != 6):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
         # elif (value == 5 and self._last_sel != 4):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
         # elif (value == 7 and self._last_sel != 5):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
         # elif (value == 6 and self._last_sel != 7):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
             
         self._last_sel = value
 

python/biopro/server/data.py

@@ -117,6 +117,9 @@ class DataServer(SocketServer, DataAPI):
         self.database_process = DataBaseProcess('data_server', self.log_verbose, self._queue_db, self._queue_ds_dict, self._queue_msg)
         self.database_process.start()
 
+        # self._no_data_total_duration = 0
+        # self._recv_memory_cost_time = 0
+
     @logging_info
     def setup(self):
         self._available_channel.clear()
@@ -666,7 +669,17 @@ class DataServer(SocketServer, DataAPI):
                 print("q size= ", self._configurations[device]._queue_rec.qsize())
 
             self._configurations[device].put_rec_queue(data)
+            # self._no_data_total_duration = 0
             ret = True
+        # else:
+        #     time_diff = time() - self._recv_memory_cost_time
+        #     self._no_data_total_duration += time_diff
+        #     if self._no_data_total_duration > 1:
+        #         print('data is None', device, datetime.now(), self._no_data_total_duration)
+        #         print("sync.get_pin_mem_req() != sync.get_pin_ram_sel()")
+        #         print("no~", sync.select, sync.get_pin_mem_req(), sync.get_pin_ram_sel(), datetime.now())
+        #         print()
+        # self._recv_memory_cost_time = time()
 
         return ret
 

python/biopro/server/recording.py

@@ -357,7 +357,8 @@ class RecordingProcess(Process):
         if colum_total == 1:
             print('this ram data < 3 records, colum_total = ', colum_total)
             print('raw_data[0]', list(raw_data[0]))
-            return save
+            save = True
+            # return save
 
         elif colum_total == 2:
             print('this ram data < 3 records, colum_total = ', colum_total)

python/res/devlib/json/elite_eis.devlib.json

@@ -15,6 +15,17 @@
     "TIME_MAX": 100000
   },
   "parameters": {
+    "TIME_DURATION": {
+      "description": "Run duration",
+      "record_meta": true,
+      "initial": 0,
+      "domain": [
+        "TIME_MAX"
+      ],
+      "value": {
+        "expression": "VALUE"
+      }
+    },
     "CHANNEL": {
       "derzteription": "record channels",
       "record_meta": true,
@@ -101,9 +112,9 @@
     "DC_BIAS": {
       "description": "DC voltage bias in mV",
       "record_meta": true,
-      "initial": 15000,
+      "initial": 25000,
       "domain": [
-        35001
+        "VOLT_MAX"
       ],
       "value": {
         "expression": "VALUE"
@@ -255,17 +266,7 @@
       "domain": "int"
     }
   },
-  "TIME_DURATION": {
-    "description": "Run duration",
-    "record_meta": true,
-    "initial": 0,
-    "domain": [
-      "TIME_MAX"
-    ],
-    "value": {
-      "expression": "VALUE"
-    }
-  },
+  
   "instruction": {
     "start": [
       {

python/res/devlib/json/elite_zm_15.devlib.json

@@ -687,6 +687,15 @@
         "expression": "VALUE"
       }
     },
+    "CC_CP_SPEED": {
+      "description": "charge speed for CC and CP mode",
+      "initial": 1,
+      "value": [
+        "low",
+        "normal",
+        "high"
+      ]
+    },
     "ADC_LEVEL_I_15": {
       "description": "ADC level",
       "record_meta": true,
@@ -861,7 +870,7 @@
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
-          "16": "const_current"
+          "16": "curve_cp"
         }
       },
       {
@@ -1059,6 +1068,7 @@
         "vb": "Const_Current_value",
         "vc": "VOLTSTOP_MAX",
         "vd": "VOLTSTOP_MIN",
+        "ve": "CC_CP_SPEED",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",
@@ -1070,7 +1080,31 @@
         "B>va;4B>vb;2B>vc;2B>vd;",
         "4b>pa;4b>pb;",
         "4b>pc;4b>pd;",
-        "2B>pe"
+        "2B>pe;",
+        "4b>0b0001;4b>ve"
+      ]
+    },
+    "curve_cp": {
+      "type": "RIS",
+      "parameter": {
+        "va": "Charge",
+        "vb": "Const_Current_value",
+        "vc": "VOLTSTOP_MAX",
+        "vd": "VOLTSTOP_MIN",
+        "ve": "CC_CP_SPEED",
+        "pa": "ADC_LEVEL_I_15",
+        "pb": "ADC_LEVEL_V_IN_15",
+        "pc": "DAC_LEVEL_V_OUT_15",
+        "pd": "CTRL_HIGH_Z_15",
+        "pe": "SAMPLE_RATE"
+      },
+      "data": [
+        "X07;",
+        "B>va;4B>vb;2B>vc;2B>vd;",
+        "4b>pa;4b>pb;",
+        "4b>pc;4b>pd;",
+        "2B>pe;",
+        "4b>0b0000;4b>ve"
       ]
     },
     "curve_cv3": {