[update] fix stop close writer losing data problem

This reverts commit cd60e14cbe.

README.md

@@ -4,7 +4,7 @@ New goal on pi4 without kotlin and django, and with only one dataserver.
 # Installation
 ### Get Raspbrain into SD card
 
-###### Download Raspbian Buster Lite
+###### Download Raspbian Bullseye Lite
 
 >https://www.raspberrypi.org/downloads/raspberry-pi-os/
 
@@ -14,7 +14,7 @@ New goal on pi4 without kotlin and django, and with only one dataserver.
 lsblk
 
 # copy data to sd card
-sudo dd bs=4M if=yyyy-mm-dd-raspbian-buster.img of=/dev/sdX conv=fsync status=progress
+sudo dd bs=4M if=yyyy-mm-dd-raspios-bullseye-armhf-lite.img of=/dev/sdX conv=fsync status=progress
 
 # enable ssh on first boot
 add ssh.txt in boot folder
@@ -77,18 +77,22 @@ add ssh.txt in boot folder
 
 
 ###### Install dependencies
-    sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql
+    sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql npm
+
+###### wiringpi conflict
+need to install wiringpi:  https://github.com/WiringPi/WiringPi
+install instructions:  https://github.com/WiringPi/WiringPi/blob/master/INSTALL
 
 ### Setup project
-###### Clone project
+###### Clone data server project
 ```
 cd ~
-git clone https://gitlab.com/bioproscientific/bioprorelife.git
+git clone https://gitlab.com/wisetop/controller/wisetopdataserver.git
 ```
 
 ###### Install python dependencies
 ```
-cd ~/bioprorelife
+ cd ~/wisetopdataserver
 pip3 install -r requirements.txt
 ```
 ##### Packages version
@@ -112,14 +116,14 @@ psycopg2                      2.8.5
 
 ###### Build C extension
 ```
-cd ~/bioprorelife/python/biopro/ext/
+cd ~/wisetopdataserver/python/biopro/ext/
 rm -rf *.so build
 python3 setup.py build_ext --inplace
 ```
 
 ###### Check setup-uart file
 ```
-cd ~/bioprorelife
+cd ~/wisetopdataserver/
 sudo vim ./run-setup-uart.sh
 ```
 ##### Modify the code as following
@@ -149,44 +153,72 @@ sudo raspi-config
 reboot
 ```
 
+###### Set pi password
+```
+$cd ~
+$passwd
+Current password:raspberry
+New password:5k6zj454778225
+Retype new password:5k6zj454778225
+```
+
 ###### Auto run program when device start
 ```
 sudo vim /etc/rc.local
 ```
-add the code following as:
+###### add the code following as:
 ```
-sudo -H -u pi nohup /home/pi/bioprorelife/run-data-server.sh > /home/pi/.data_server.out &
+sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.data_server.out &
+#sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.wisetop_data_$now.out &
 ```
+##### /etc/rc.local
+```
+_IP=$(hostname -I) || true
+if [ "$_IP" ]; then
+  printf "My IP address is %s\n" "$_IP"
+fi
 
+now=$(date +'%F_%T')
+
+sudo nohup systemctl restart apache2
+sudo nohup systemctl restart mosquitto
+
+nohup node /home/pi/wisetopapiserver/dist/app.js > /home/pi/.api_server.out &
+
+sleep 5
+
+sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.data_server.out &
+#sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.wisetop_data_$now.out &
+
+exit 0
+```
 ### MQTT broker install
 
-1. Install mosquitto
-```
-sudo apt-get install mosquitto mosquitto-clients
-```
+###### 1.Install mosquitto
+$sudo apt-get install mosquitto mosquitto-clients
+
+
+###### 2.Enable Remote Access
+$sudo vim /etc/mosquitto/conf.d/default.conf
 
-2. Enable Remote Access
-```
-sudo vim /etc/mosquitto/conf.d/default.conf
-```
 add the code following as:
 ```
 listener 1883
 protocol mqtt
 listener 8083
 protocol websockets
+allow_anonymous true
 ```
-restart mqtt broker
-```
-sudo systemctl restart mosquitto
-```
+###### 3.restart mqtt broker
+$sudo systemctl restart mosquitto
 
-3. Robust MQTT
+###### 4.Robust MQTT
 create mosquitto_restart.sh
-```
-cd ~
-sudo vim mosquitto_restart.sh
-```
+
+$cd ~
+$sudo vim mosquitto_restart.sh
+
+
 add the code following as:
 ```
 if [ "`ps -aux | grep /usr/sbin/mosquitto | wc -l`" == "1" ]
@@ -200,25 +232,129 @@ fi
 echo "$SERVICE is currently running" >> /home/ubuntu/cron.log
 exit 0
 ```
-add mosquitto_restart.sh to root routing
-```
-sudo chmod +x mosquitto_restart.sh
-sudo  -i
-crontab -e
-```
+###### 5.add mosquitto_restart.sh to root routing
+$sudo chmod +x mosquitto_restart.sh
+$sudo  -i
+$crontab -e
+
 add the code following as:
 ```
 */5 * * * * /home/pi/mosquitto_restart.sh
 ```
-3. Auto run MQTT broker when when pi-start
-```
-sudo vim /etc/rc.local
-```
+###### 6.Auto run MQTT broker when when pi-start
+$sudo vim /etc/rc.local
+
 add the code following as:
 ```
 sudo nohup systemctl restart mosquitto
 ```
 
-### Setup routed wireless access point
+### Setting up a Routed Wireless Access Point
+###### 1.Install AP and Management Software
+$sudo apt install hostapd
+$sudo systemctl unmask hostapd
+$sudo systemctl enable hostapd
+$sudo apt install dnsmasq
+$sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
+
+###### 2.Set up the Network Router
+$sudo nano /etc/dhcpcd.conf
+```
+interface wlan0
+    static ip_address=192.168.2.1/24
+    nohook wpa_supplicant
+```
+$sudo nano /etc/sysctl.d/routed-ap.conf
+```
+# Enable IPv4 routing
+net.ipv4.ip_forward=1
+```
+
+$sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
+$sudo netfilter-persistent save
+$sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
+
+
+$sudo nano /etc/dnsmasq.conf
+
+```
+interface=wlan0 # Listening interface
+dhcp-range=192.168.2.2,192.168.2.255,255.255.255.0,24h
+                # Pool of IP addresses served via DHCP
+domain=wlan     # Local wireless DNS domain
+address=/gw.wlan/192.168.2.1
+                # Alias for this router
+```
+###### 3.Ensure Wireless Operation
+$sudo rfkill unblock wlan
+
+###### 4.Configure the AP Software
+$sudo nano /etc/hostapd/hostapd.conf
+
+```
+country_code=TW
+interface=wlan0
+ssid=WTP_NONE
+hw_mode=g
+channel=7
+macaddr_acl=0
+auth_algs=1
+ignore_broadcast_ssid=0
+wpa=2
+wpa_passphrase=00000000
+wpa_key_mgmt=WPA-PSK
+wpa_pairwise=TKIP
+rsn_pairwise=CCMP
+
+# 802.11n support
+ieee80211n=1
+# make raspberry pi dongle fast
+wme_enabled=1
+# ht_capab: HT capabilities, enable 40MHz
+ht_capab=[HT40+][SHORT-GI-40]
+```
+###### 5.Running the new Wireless AP
+$sudo systemctl reboot
+
+
+### Set web site
+$sudo vim ./sites-available/000-default.conf
+```
+<VirtualHost *:8080> #80------>8080
+        # The ServerName directive sets the request scheme, hostname and port that
+        # the server uses to identify itself. This is used when creating
+        # redirection URLs. In the context of virtual hosts, the ServerName
+        # specifies what hostname must appear in the request's Host: header to
+        # match this virtual host. For the default virtual host (this file) this
+        # value is not decisive as it is used as a last resort host regardless.
+        # However, you must set it for any further virtual host explicitly.
+        #ServerName www.example.com
+
+        ServerAdmin webmaster@localhost
+        DocumentRoot /var/www/html
+
+        # Available loglevels: trace8, ..., trace1, debug, info, notice, warn,
+        # error, crit, alert, emerg.
+        # It is also possible to configure the loglevel for particular
+        # modules, e.g.
+        #LogLevel info ssl:warn
+
+        ErrorLog ${APACHE_LOG_DIR}/error.log
+        CustomLog ${APACHE_LOG_DIR}/access.log combined
+
+        # For most configuration files from conf-available/, which are
+        # enabled or disabled at a global level, it is possible to
+        # include a line for only one particular virtual host. For example the
+        # following line enables the CGI configuration for this host only
+        # after it has been globally disabled with "a2disconf".
+        #Include conf-available/serve-cgi-bin.conf
+</VirtualHost>
+
+<VirtualHost *:80>
+    ServerAdmin bioprovue@localhost
+    DocumentRoot /var/www/bioprovuebuild
+</VirtualHost>
+```
+
 ##### raspberry website document:
 > https://www.raspberrypi.org/documentation/configuration/wireless/access-point-routed.md

python/biopro/api/controller.py

@@ -18,9 +18,10 @@ class ControllerAPI():
     @staticmethod
     def getByMac(mac_address):
         try:
-            ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
-            if ret.status_code == 200:
-                return ret.json()
+            if mac_address != None:
+                ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
+                if ret.status_code == 200:
+                    return ret.json()
         except (requests.exceptions.ConnectionError, json.decoder.JSONDecodeError) as e:
             print('get controller fail', e)
         return []

python/biopro/controller.py

@@ -1576,6 +1576,11 @@ class ControlAPI(metaclass=Router):
         should handle this exit code and re-run server process.
         """
         raise NotImplementedError()
+    
+    def run_project(self, project) -> bool:
+        print('create_project', project)
+        self._project_manager.create(project)
+        return False
 
 
 # noinspection PyAbstractClass

python/biopro/device/device_cc2650.py

@@ -536,7 +536,7 @@ class CC2650Device(Device):
             self._master.log_warn('device', self.device_id, 'update_battery_info no response')
 
         else:
-            if data is not None and len(data) == 4 :
+            if data is not None and len(data) > 2 :
                 battery = struct.unpack('<H', data[1:3])[0]
                 if battery is not None:
                     self._battery = battery
@@ -2035,6 +2035,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         # print("local_name = ", local_name)
 
         # addr type is don't care in BMD380
+        print('scan_response:', list(scan_response))
         local_addr_type = int(scan_response[index:index + 1][0])
         # local_addr_type = 0xFF
         index = index + 1

python/biopro/device/manager.py

@@ -253,6 +253,7 @@ class DeviceInternalCommandHandler:
         return True
 
 
+# why inherit MasterDevice ?
 class DeviceManager(MasterDevice, Synchronized):
     """device manager. It manager the device libraries, found device, connected device
     and the control of the master device.
@@ -267,7 +268,6 @@ class DeviceManager(MasterDevice, Synchronized):
                  options: DeviceManagerOptions,
                  handler: Optional[DeviceInternalCommandHandler] = None):
         """
-
         :param options: manager options.
         :param handler: device internal command handler
         """
@@ -277,6 +277,7 @@ class DeviceManager(MasterDevice, Synchronized):
         if handler is None:
             handler = DeviceInternalCommandHandler()
 
+        # control server api
         self._handler: DeviceInternalCommandHandler = handler
         self._options: DeviceManagerOptions = options
 
@@ -286,7 +287,9 @@ class DeviceManager(MasterDevice, Synchronized):
         # hardware
         self._interface = options.interface
         self._master: Optional[MasterDevice] = None
+        # memory board
         self._centralMaster: Optional[MasterDevice] = None
+        # connected device
         self._device: List[CompletedDevice] = []
 
         # demo device
@@ -336,6 +339,10 @@ class DeviceManager(MasterDevice, Synchronized):
     def library_path(self) -> List[Path]:
         return self._repository.library_path
 
+    def get_device_status(self, mac_address) -> Optional[DeviceLibrary]:
+        device = self.get_device(mac_address)
+        return device.status
+
     @logging_info
     def reload_library(self):
         """reload device library"""
@@ -574,7 +581,7 @@ class DeviceManager(MasterDevice, Synchronized):
 
         elif isinstance(device, str):
             for slave in self._device:
-                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device:
+                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
                     return slave
 
         elif isinstance(device, DeviceInfo):
@@ -1023,15 +1030,9 @@ class DeviceManager(MasterDevice, Synchronized):
             raise RuntimeError(DEVICE_NOT_FOUND, device)
 
         if DeviceCommonInstruction(instruction) is not None:
-            # print('deviceCommonInstr')
-            # print(instruction)
             device.call_instruction(instruction)
-
         elif instruction in device.library.instruction_table:
-            # print('instruction')
-            # print(instruction)
             device.call_instruction(instruction)
-
         else:
             raise RuntimeError(INSTRUCTION_UNKNOWN, instruction)
 

python/biopro/devlib/data.py

@@ -882,21 +882,18 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        current = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        voltage = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        impedance = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
-        finish_mode_falg = data[19]
+        mem_cnt = data[1]
+        time_stamp: float = struct.unpack('<I', data[4:8])[0]  # unit: ms 0x18030000
+        current = struct.unpack('<i', data[8:12])[0]  # unit: nA
+        voltage = struct.unpack('<i', data[12:16])[0]  # unit: uV
+        impedance = struct.unpack('<i', data[16:20])[0]  # unit: mOm
+        cycle_number = struct.unpack('<H', data[20:22])[0]
+        finish_mode_falg = data[22]
+        battery = struct.unpack('<i', data[23:27])[0]
+        elite_notify_times = data[27]
 
-        mem_wrong_information = struct.unpack('>i', data[40:40+4])[0]
-
-        # print('decode', list(data[20:]))
-        mem_wrong = data[40]
-        mem_retry_cnt = data[41]
-        mem_green_wrong = data[42]
-        mem_green_retry_cnt = data[43]
-        ram_num = data[44]
+        mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
+        ram_num = data[47]
         broken_flag = data[-1]
 
         if (finish_mode_falg & 0b11110000 == 0b10100000):
@@ -917,10 +914,13 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                # print('|', time_stamp, '|', delta, '|', current, '|', voltage, '|', impedance,
+                # print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
+                #       '|', current, '|', voltage, '|', impedance,
                 #       '|', cycle_number, '|', finishMode, '@', str(self.device))
+
                 # print('|', '{:10}'.format(time_stamp),
-                #       '|', '{:10}'.format(delta),
+                #       '|', '{:4}'.format(delta),
+                #       '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
                 #       '|', '{:10}'.format(current),
                 #       '|', '{:10}'.format(voltage),
                 #       '|', '{:10}'.format(impedance),
@@ -928,13 +928,9 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 #       '|', '{:1}'.format(finishMode),
                 #       '@', str(self.device), '|')
 
-                # print('|', '{:5}'.format(mem_wrong),
-                #       '|', '{:5}'.format(mem_retry_cnt),
-                #       '|', '{:5}'.format(mem_green_wrong),
-                #       '|', '{:5}'.format(mem_green_retry_cnt),
-                #       '|', '{:5}'.format(mem_wrong_information),
-                #       '|', '{:5}'.format(ram_num),
-                #       '|', '{:5}'.format(broken_flag),
+                # print('|', '{:5}'.format(mem_wrong_information),
+                #       '|', '{:2}'.format(ram_num),
+                #       '|', '{:2}'.format(broken_flag),
                 #       '@', str(self.device), '|')
                 pass
 
@@ -949,16 +945,20 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         ret.append_data(1, voltage)
         ret.append_data(2, impedance)
         ret.append_data(3, cycle_number)
+        ret.append_data(4, battery)
+        ret.append_data(5, elite_notify_times)
+        ret.append_data(6, mem_cnt)
 
         # memoryboard information
-        # ret.append_data(4, mem_wrong)
-        # ret.append_data(5, mem_retry_cnt)
-        # ret.append_data(6, mem_green_wrong)
-        # ret.append_data(7, mem_green_retry_cnt)
-        ret.append_data(4, ram_num)
-        ret.append_data(5, broken_flag)
-        ret.append_data(6, mem_wrong_information)
-        # ret.append_data(4, ram_num)
+        ret.append_data(7, ram_num)
+        ret.append_data(8, broken_flag)
+        try:
+            ret.append_data(9, mem_wrong_information)
+            # print('append_data success, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+        except:
+            print('append_data fail, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+
+
     
         if cycle_number != self._cycle_number:
             # notify cycle_number change
@@ -1456,12 +1456,12 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        ch1 = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        ch2 = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        ch3 = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
-        d19 = data[19]
+        ch1 = struct.unpack('>i', data[1+3:5+3])[0]  # unit: 1/1000 nA
+        ch2 = struct.unpack('>i', data[5+3:9+3])[0]  # unit: mV
+        ch3 = struct.unpack('>i', data[9+3:13+3])[0]  # unit: kOm
+        time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0]  # unit: ms
+        cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
+        d19 = data[19+3]
         gain = (d19 & 0x0F)
         finishMode = (d19 & 0x80) >> 7        
         

python/biopro/devlib/instruction.py

@@ -1268,14 +1268,15 @@ class InstructionTable(DictNode['Instruction']):
                          instruction: str):
         """call instruction. chain context with :class:`DeviceInternalInstructionScope`
 
-        :param master: master device
-        :param device: device
+        :param master: DeviceManager
+        :param device: CompletedDevice
         :param context: scope
         :param instruction: instruction name
         :raises InstructionNotFound: If instruction not found.
         """
 
         try:
+            # ex. start 
             ins = self[instruction]
 
         except KeyError as e:
@@ -1284,6 +1285,7 @@ class InstructionTable(DictNode['Instruction']):
         else:
             context = context.chain(InstructionTableScope(self))
 
+            # ex. _data_format, _sync, _notify
             for single in ins.eval_instruction(context):
                 if isinstance(single, InternalInstruction):
                     if not single.handle_internal_instruction(master, device, context):

python/biopro/devlib/library.py

@@ -966,7 +966,7 @@ class CompletedDevice(Device):
     """
     __slots__ = ('_master', '_device_id', '_device', '_library', '_context',
                  '_parameter', '_configuration', '_lock', '_feature_mask',
-                 '_cache_battery', '_cache_battery_timestamp', '_coeff')
+                 '_cache_battery', '_cache_battery_timestamp', '_coeff', '_status')
 
     def __init__(self, master: MasterDevice, library: DeviceLibrary, device_id: int, device: Device):
         """
@@ -976,11 +976,15 @@ class CompletedDevice(Device):
         :param device_id: device id
         :param device: slave device implementation
         """
+        # DeviceManager
         self._master = master
         self._device = device
         self._device_id = device_id
         self._library = library
 
+        # device status ( 0: idle, 1: working, 2: error, 3: power off)
+        self._status = 0
+
         # context
         s1 = library.constant
         s2 = DeviceScope(self)
@@ -1020,6 +1024,10 @@ class CompletedDevice(Device):
     def mac_address(self) -> ADDRESS:
         return self._device.mac_address
 
+    @property
+    def mac_address_in_str(self) -> str:
+        return ':'.join('{:02x}'.format(b) for b in self._device.mac_address)
+
     @property
     def device(self) -> Device:
         return self._device
@@ -1056,11 +1064,18 @@ class CompletedDevice(Device):
         return self._library
 
     # device lock
-
     @property
     def lock(self) -> DeviceLock:
         return self._lock
 
+    @property
+    def status(self) -> int:
+        return self._status
+    
+    @status.setter
+    def status(self, new_status):
+        self._status = new_status
+
     # device parameter getter/setter
 
     def parameters(self) -> List[str]:
@@ -1082,6 +1097,11 @@ class CompletedDevice(Device):
         :return: parameter V value
         """
         return self._configuration.get_parameter(name, False)
+    
+    def set_multi_parameters(self, parameter):
+        for (name, value) in parameter[0].items():
+            if name != 'target':
+                self.set_parameter(name, value)
 
     def set_parameter(self, name: str, value: Union[int, str]):
         """replace parameter value with *value*
@@ -1110,7 +1130,8 @@ class CompletedDevice(Device):
                 self._master.log_warn('on_change instruction not found : ' + on_change)
 
             else:
-                self.call_instruction(on_change)
+                if self._status == 1:
+                    self.call_instruction(on_change)
 
     # device instruction call
 
@@ -1256,6 +1277,7 @@ class CompletedDevice(Device):
             'device_id':       self.device_id,
             'device_name':     self.device_name,
             'device_address':  list(self.mac_address),
+            'device_status': self._status,
             'battery':         self.battery,
             'parent':          self.parent,
             'recording_file_name':      self.recording_file_name,

python/biopro/impl/ext_mem.py

@@ -24,8 +24,10 @@ def zero_buffer(size: int) -> List[int]:
     return [0] * size
 
 class MultiExtMemSpiInterface(LowLevelHardwareInterface):
-    MEM_INS_MARKED = [MEM_INS_WRITE, 0, 2, 1, 1]
-    MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
+    MEM_INS_MARKED1 = [MEM_INS_WRITE, 0, 2, 0x5A, 0xA5]
+    MEM_INS_MARKED2 = [MEM_INS_WRITE, 0, 6, 0x5A, 0xA5]
+    MEM_INS_MARKED3 = [MEM_INS_WRITE, 0, 10, 0x5A, 0xA5]
+    # MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
 
     __slots__ = ('_selector', '_wait_for_first_data', '_spi', '_tx_buffer_header', '_tx_buffer_data',
                  'pin_busy', 'pin_mem_req', 'pin_mem_sel', 'pin_ram_sel',
@@ -44,11 +46,11 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
         self._elite_data_len = 40
         self._mem_header_len = 3
-        self._mem_tailer_len = 8
+        self._mem_tailer_len = 6
         self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
 
         # buffer
-        self._tx_buffer_header = [0] * 11
+        self._tx_buffer_header = [0] * 19
         self._tx_buffer_data = [0] * (self._single_data_len * 10 + 3)
 
         # memory control pin
@@ -165,6 +167,52 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         print("read red data times", self._read_red_times)
         return data
 
+    def _compare_green_data_addr_and_flag(self, data: Union[bytes, List[int]], device: int):
+
+        green_data_section1 = data[3:7]
+        green_data_section2 = data[7:11]
+        green_data_section3 = data[11:15]
+        green_data_section = []
+
+        if green_data_section1 == green_data_section2:
+            green_data_section = green_data_section1
+
+        elif(green_data_section2 == green_data_section3 or green_data_section1 == green_data_section3):
+            print("green data not equal: = ", data[3:15])
+            print("green data print:", data, device, datetime.now())
+            green_data_section = green_data_section3
+
+        else:
+            print("green data not equal: = ", data[3:15])
+            print("green data print:", data, device, datetime.now())
+            green_data_section = green_data_section3 # use last data
+
+
+        return green_data_section
+
+    def _print_ram_all_data(self):
+        addr = 0
+        red_length = int(7000 / 2)
+        tx_temp = [0] * (red_length + 3)
+
+        while True:
+            tx_temp[0] = MEM_INS_READ
+            tx_temp[1] = ((addr >> 8) & 0xFF)
+            tx_temp[2] = (addr & 0xFF)
+
+            ram_data = []
+            ram_data = self._spi.send_byte(tx_temp)
+            ram_data[0:3] = [255, 255, 255]
+            print(list(ram_data), len(ram_data), addr)
+            addr += len(ram_data) - 3
+
+            if (7000 < addr + len(ram_data)):
+                del ram_data
+                break
+        print()
+
+        return
+
     def recv_memory(self, device: int) -> Optional[bytes]:
         self.pin_busy.output(False)
 
@@ -191,7 +239,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                 self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
                 if (self._head_wrong_cnt[device] <= 5): # print 5 times
                     print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-                    print(list(data[0:7]))
+                    print(list(data))
 
             data[0:3] = [255, 255, 255]
             # ----------------------------------------------------------------------------------------------
@@ -210,13 +258,13 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
             #     if (self._head_wrong_cnt[device] < 10):
             #         print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-            #         print(list(data_first[0:7]))
+            #         print(list(data_first))
 
             # if (data_second[0] != 255 or data_second[1] != 255 or data_second[2] != 255):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
             #     if (self._head_wrong_cnt[device] < 10):
             #         print('data_second[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-            #         print(list(data_second[0:7]))
+            #         print(list(data_second))
 
             # if (data_first[3:] == data_second[3:]):
             #     data = data_first
@@ -228,59 +276,47 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             #     data = self.compare_green_data(data_first, data_second, data_third, len(tx_h))
             # ----------------------------------------------------------------------------------------------
 
-            # debug use
-            # green_data = []
-            # green_data = data
-            # print("_[Debug] @ spi green data = ", green_data)
+            green_data_section = self._compare_green_data_addr_and_flag(data, device)
 
-            length = (data[3] << 8) | data[4]
-            header = data[7]
-            elite_data_len = data[9]
+            length = (green_data_section[0] << 8) | green_data_section[1]
+            header = data[15]
+            elite_data_len = data[17]
+
+            if length <= 12:
+                if length < 12:
+                    print("length < 12")
+                    print("green data print:", data, device, datetime.now())
+
+                # if length == 0:
+                #     self._print_ram_all_data()
 
-            if length <= 4:
-                # print("length <= 4")
-                # print("green data print:", data, device, datetime.now())
                 return None
 
-            if data[5] != 0 or data[6] != 0:
+            if green_data_section[2] != 0xA5 or green_data_section[3] != 0x5A:
                 # give a default length if the data header did not update
-                length = 7000
-                print("green data: is not [0,0], = ", data[5:7])
+                print("green data: is not [0xA5, 0x5A], = ", data[5:7])
                 print("green data print:", data, device, datetime.now())
                 return None
 
-            if (length >= 7000):
+            if (length >= 4000):
                 flag_print = True
                 print("green data: big length:", length)
 
             if (header != 255):
                 flag_print = True
                 print("green data: header is not 255: ", header)
+                # self._print_ram_all_data()
 
             if (elite_data_len != self._elite_data_len):
                 flag_print = True
                 print("green data: length is not", self._elite_data_len, ": ", elite_data_len)
 
             if (flag_print):
-                print("green data print:", data, device, datetime.now())
+                print("green data print:", data, device, datetime.now(), '\n')
 
-            # neulive
-            # address += len(data) - 11
-            # tx_d = self._tx_buffer_data
-            # red_length = len(tx_d)
-
-            # elite read all data of ram
-            # address = 4
-            # red_length = length - 1 
-            # tx_d = [0] * red_length
-
-            address = 4
+            address = 12
             red_length = int(length / 2)
-            tx_d = [0] * red_length
-
-            # elite read len(_tx_buffer_data) byte
-            # address = 4
-            # tx_d = self._tx_buffer_data
+            tx_d = [0] * (red_length + 3)
 
             while True:
                 tx_d[0] = MEM_INS_READ
@@ -319,22 +355,60 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                     address += len(data) - 3
                     del data
 
-            # print("_[Debug] @ spi recv data rx = ")
+            # last_index = 0
+            # print("_[Debug] @ spi recv data rx, ram_select:", self._pin_ram_sel_value[device], ",", datetime.now())
             # for i in range(0, len(rx), self._single_data_len):
-            #     print(rx[i:i+self._single_data_len])
+            #     last_index = i
+            #     # print(rx[i:i+self._single_data_len])
+            #     if i == 0:
+            #         print(rx[0:8], 'ram:', rx[47])
+
+            # if last_index != 0:
+            #     print(rx[last_index:last_index+8], 'ram:', rx[last_index+47])
             # print()
 
             # /* 
             #  * red data formate:
             #  * ramHdr, ramHdr, ramHdr,                                   (3B)
             #  * 255, #, data_length,                                      (3B)
-            #  * data,                                                     (20B)
+            #  * data,                                                     (40B)
             #  * red_wrong, red_retry_cnt, green_wrong, green_retry_cnt,   (4B)
-            #  * 255, #, data_length,                                      (3B) 
+            #  * check_num,                                                (1B)
             #  *                                                                  */
 
+            # read again if check num is wrong
+            index = 0
+            check_number_print = False
+            for i in range(0, len(rx), self._single_data_len):
+                check_sum = sum(rx[i : i + self._single_data_len - 1]) & 0b11111111
+                # print(check_sum, rx[i + self._single_data_len - 1])
+
+                if (check_sum != rx[i + self._single_data_len - 1]):
+                    # print('check_sum wrong, origin value:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
+                    tx_d = [0] * (self._single_data_len + 3)
+                    address = 12 + self._single_data_len * index
+                    tx_d[0] = MEM_INS_READ
+                    tx_d[1] = ((address >> 8) & 0xFF)
+                    tx_d[2] = (address & 0xFF)
+
+                    data = []
+                    data = self._spi.send_byte(tx_d)
+                    data[0:3] = [255, 255, 255]
+                    rx[i : i + self._single_data_len] = data[3:]
+                    print('check_sum wrong, read again:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
+                    check_number_print = True
+                index = index + 1
+
+            if check_number_print:
+                print('check_sum wrong:', device, datetime.now())
+                for i in range(0, len(rx), self._single_data_len):
+                    print(rx[i:i+self._single_data_len])
+                print()
+
             # mark read
-            self._spi.send_byte(self.MEM_INS_MARKED)
+            self._spi.send_byte(self.MEM_INS_MARKED1)
+            self._spi.send_byte(self.MEM_INS_MARKED2)
+            self._spi.send_byte(self.MEM_INS_MARKED3)
 
         except BaseException as e:
             print(e)

python/biopro/project/action.py

@@ -0,0 +1,26 @@
+
+class Action():
+    def __init__(self, action_id, action):
+        self._id: str = action_id
+        self._type: str = action['type']
+        self._target: str = action['target']
+        self._condition : list[str] = action['condition']
+        # self._duration = action.get('duration', None)
+        # self._goto = action.get('goto', None)
+        # self._cycle = action.get('cycle', None)
+    
+    @property
+    def id(self):
+        return self._id
+
+    @property
+    def type(self):
+        return self._type
+    
+    @property
+    def target(self):
+        return self._target
+    
+    @property
+    def condition(self):
+        return self._condition

python/biopro/project/condition.py

@@ -0,0 +1,96 @@
+from datetime import datetime
+from time import time
+
+class Condition():
+    def __init__(self, id, condition):
+        self._id = id
+        self._type = condition['type']
+        self._comparsion = condition['comparsion']
+        self._value = condition['value']
+        self._active = False
+    
+    @property
+    def id(self):
+        return self._id
+
+    @property
+    def type(self):
+        return self._type
+
+    @property
+    def comparsion(self):
+        return self._comparsion
+
+    @property
+    def value(self):
+        return self._value
+    
+    @id.setter
+    def id(self, new_id):
+        self._id = new_id
+    
+    @type.setter
+    def type(self, new_type):
+        self._type = new_type
+
+    @comparsion.setter
+    def comparsion(self, new_comparsion):
+        self._comparsion = new_comparsion    
+    
+    @value.setter
+    def value(self, new_value):
+        self._value = new_value
+
+    def compareWith(self, operator, x, y) -> bool:
+        # print(operator, x, y)
+        cases = {
+            "equal": lambda a, b: a == b,
+            "bigger": lambda a, b: a > b,
+            "smaller": lambda a, b: a < b,
+        }
+
+        return cases[operator](x, y)
+
+    def match_or_not(self, **kwargs):
+        # print(self._type, self._comparsion, self._value)
+        return getattr(self, self.type)(**kwargs)
+       
+    def absolute_time(self, **kwargs):
+        now = int(time())
+        time_condition = round(self.datetime_to_timestamp(self.str_to_datetime(self._value)))
+
+        return self.compareWith(self.comparsion, now, time_condition)
+
+    def after_project_run(self, **kwargs):
+        project_start_time = kwargs['project_start_time']
+        delay_time = kwargs['delay_time']
+
+        time_diff = int(time() - project_start_time - delay_time)
+        return self.compareWith(self.comparsion, time_diff, int(self._value))
+    
+    def after_task_run(self, **kwargs):
+        # print('relative_time_from_task', kwargs,kwargs['task_start_time'],kwargs['delay_time'])
+        if len(kwargs['task_start_time']) == 0:
+            return False
+        task_start_time = kwargs['task_start_time'][-1]
+        delay_time = kwargs['delay_time']
+
+        time_diff = int(time() - task_start_time - delay_time)
+        # print('time_diff',  time_diff)
+        return self.compareWith(self.comparsion, time_diff, int(self._value))
+    
+    def device(self, **kwargs):
+        print('device')
+    
+    def previous_task_done(self, **kwargs):
+        running_task = kwargs['running_task']
+        if running_task.status == 2 and self._active == False:
+            self._active = True
+            return True
+        return False
+
+    def str_to_datetime(self, time_str):
+        return datetime.strptime(time_str,'%Y-%m-%dT%H:%M')
+
+    def datetime_to_timestamp(self, date):
+        return datetime.timestamp(date)

python/biopro/project/instruction.py

@@ -0,0 +1,32 @@
+
+class Instruction():
+    def  __init__(self):
+        self._instruction_set = {
+            'set_file_name': {
+                'method': 'update_recording_file_name_info',
+                'arguments': ['file_name']
+            },
+            'set_parent': {
+                'method': 'update_parent_info',
+                'arguments': ['parent']
+            },
+            'set_parameter':{
+                'method': 'set_multi_parameters',
+                'arguments': ['parameter']
+            },
+            'call_instruction': {
+                'method': 'call_instruction',
+                'arguments': ['instruction']
+            },
+        }
+    
+        self._start_instruction = list(map(lambda ins: self._instruction_set[ins] ,['set_file_name', 'set_parent', 'set_parameter', 'call_instruction']))
+        self._stop_instruction = list(map(lambda ins: self._instruction_set[ins] ,['call_instruction']))
+    
+    @property
+    def start(self) -> list:
+        return self._start_instruction
+    
+    @property
+    def stop(self) -> list:
+        return self._stop_instruction

python/biopro/project/project.py

@@ -0,0 +1,209 @@
+import sys
+import json
+import threading
+
+from time import time, sleep
+from datetime import datetime
+from collections import deque
+from copy import copy
+from uuid import uuid4
+
+from .task import Task
+from .task_manager import TaskManager
+from .instruction import Instruction
+from biopro.device.manager import DeviceManager
+from biopro.text import *
+
+key_list = {
+  'deviceList': 'device',
+}
+
+class Project(threading.Thread):
+  def __init__(self, project, device_manager: DeviceManager, mqttThread = None, name="project"):
+    super(Project, self).__init__(name = name)
+    self._project = project
+    self._device_manager = device_manager
+    self._mqtt_thread = mqttThread
+    self._time_interval = 1
+    self._start_time = None
+    self._end_time = None
+
+    self._id = None
+    self._uuid = uuid4()
+    self._name = None
+    self._desc = None
+    self._device = None
+    self._complete_device = []
+    self._status = None
+
+    self._instruction_set = Instruction()
+    self._stop_flag  = False
+
+    self.setup_project(project)
+    self.setup_device(self._device)
+  
+  def setup_project(self, project):
+    for (key, value) in project.items():
+      if key in key_list.keys():
+        key = key_list[key]
+
+      if key == 'task':
+        self._task_manager = TaskManager(project['task'])
+      else:
+        setattr(self, key, value)
+      
+  def setup_device(self, device_list):
+    for device in device_list:
+      complete_device = self._device_manager.get_device(device['connectDevice']['device_address'])
+      self._complete_device.append(complete_device)
+
+  @property
+  def id(self) -> int:
+    return self._id
+  
+  @id.setter
+  def id(self, new_id):
+    self._id = new_id
+  
+  @property
+  def uuid(self) -> str:
+    return self._uuid
+  
+  @uuid.setter
+  def uuid(self, new_uuid):
+    self._uuid = new_uuid
+
+  @property
+  def name(self) -> str:
+    return self._name
+  
+  @name.setter
+  def name(self, new_name):
+    self._name = new_name
+
+  @property
+  def desc(self) -> str:
+    return self._desc
+  
+  @desc.setter
+  def desc(self, new_desc):
+    self._desc = new_desc
+  
+  @property
+  def status(self) -> str:
+    return self._status
+  
+  @status.setter
+  def status(self, new_status):
+    self._status = new_status
+
+  @property
+  def device(self) -> list:
+    return self._device
+  
+  @device.setter
+  def device(self, new_device):
+    self._device = new_device
+  
+  @property
+  def task_list(self):
+    return self.task_manager.task_list
+
+  
+  @property
+  def mqtt_thread(self):
+    return self._mqtt_thread
+
+  def run(self):
+      self._start_time = time()
+
+      self.mqtt_thread.broadcast_command('project:' + self._name + ' start_at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+      while not self._stop_flag :
+        # check running task first
+        delay_time = 0
+        check_list = copy(self._task_manager.check_list)
+
+        for task in check_list:
+          if task != None:
+            now = time()
+            # print('round task', task.name)
+            # print('running task', self._task_manager.running_task.name, self._task_manager.running_task.status)
+            # if self._task_manager.prev_task != None:
+            #   print('previous_task', self._task_manager.prev_task.name, self._task_manager.prev_task.status)
+
+            match_condition_list = task.check_condition(
+              project_start_time = self._start_time,
+              delay_time = delay_time,
+              running_task= self._task_manager.running_task,
+              previous_task =  self._task_manager.prev_task
+            )
+            # print('match_condition_list', match_condition_list)
+            for condition in match_condition_list:
+              match_action_list = task.get_match_action(condition.id)
+              for action in match_action_list:
+                # print('match_action', action.type, action.target)
+                if action.type == 'start' and task.status != 1:
+                  self._task_manager.set_running_task(task)
+                  self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+
+                device = self._complete_device[action.target]
+                task_info = task.get_task_info(action)
+                instruction_set = getattr(self._instruction_set, action.type, None)
+                # print('instruction_set',instruction_set)
+                
+                if instruction_set != None:
+                  for instruction in instruction_set:
+                    args = list(map(lambda arg: task_info[arg], instruction['arguments']))
+                    threading.Thread(target=getattr(device, instruction['method'])(*args))
+            
+            delay_time += (time() - now)
+
+        # check task not running then stop
+        if self.check_running_task_not_run() == True:
+          self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+          self._task_manager.running_task.stop()
+        
+        # check project done then close project
+        if self.check_project_done() == True:
+          self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+          print('project stop at', datetime.now())
+          self.close()
+        
+        if self._time_interval - delay_time > 0:
+          sleep(self._time_interval - delay_time)
+
+  def pause(self):
+    # TODO
+    pass
+
+  def close(self):
+    self._end_time = time()
+    self._stop_flag  = True
+
+  def check_project_done(self):
+    for task in self._task_manager.task_list:
+      # if task never start or still task is running then reject 
+      if task.status == 1 or task.status == -1:
+        return False
+    return True
+  
+  def check_running_task_not_run(self):
+    # if no running task
+    if self._task_manager.running_task == None:
+      return False
+    device_list = self._task_manager.running_task.device
+    for device in device_list:
+      if self._complete_device[device].status == 1:
+        return False
+    return True
+  
+  def as_json(self):
+    return {
+      'id': self._id,
+      'name': self._name,
+      'uuid': self._uuid,
+      'desc': self._desc,
+      'status': self._status,
+      'device': self._device,
+      'task_list': self.task_list,
+    }

python/biopro/project/project_manager.py

@@ -0,0 +1,33 @@
+from io import StringIO
+from json import loads as json_parse, dumps as _json_stringify
+from typing import Dict, Optional, Any
+import paho.mqtt.client as mqtt
+from .project import Project
+from biopro.device.manager import DeviceManager
+
+def json_stringify(o: Any) -> str:
+    return _json_stringify(o, separators=(',', ':'))
+
+class ProjectManager():
+    def __init__(self, device_manager: DeviceManager, mqtt_thread=None) :
+        self._project_list = []
+        self._mqtt_thread =  mqtt_thread
+        self._device_manager = device_manager
+    
+    def create(self, project):
+      new_project = Project(project, self._device_manager, self._mqtt_thread)
+      self._project_list.append(new_project)
+      return new_project
+
+    def remove(self, index):
+      self._project_list[index].stop()
+      del self._project_list[index]
+
+    def get(self):
+      return self._project_list
+
+    def run(self, project):
+      project.start()
+
+    def stop(self, project):
+      project.stop()

python/biopro/project/task.py

@@ -0,0 +1,252 @@
+from typing import List
+from .condition import Condition
+from .action import Action
+from time import time
+from datetime import datetime
+
+key_list = {
+  'deviceList': 'device',
+  'parameterSet': 'parameter_set'
+}
+
+class Task:
+  def __init__(self, task):
+    self._id = None
+    self._name = None
+    self._parent = None
+    self._cycle = None
+    self._device = None
+    self._event = None
+    self._trigger = None
+    self._parameter_set = None
+    self._condition = None
+    self._action = None
+    # -1: initial 0: start(idle), 1: running, 2: close(idle)
+    self._status = 0
+    self._next = None
+
+    self._condition_list: List[Condition] = []
+    self._action_list: List[Action] = []
+    self._instruction_list = []
+    self._record_list = []
+
+    self._start_time = []
+    self._idle_time = []
+    self._end_time = []
+    self._period = None
+
+    self.load_task(task)
+  
+  def load_task(self, task) -> None:
+    # update task attribute
+    for key, value in task.items():
+      if key in key_list.keys():
+        key = key_list[key]
+      if key == 'condition':
+        self.update_condition_list(value)
+      if key == 'action':
+        self.update_action_list(value)
+      # print(key, value)
+      setattr(self, key, value)
+    
+  def update_condition_list(self, condition_dict):
+    self._condition_list.clear()
+    for key, condition in condition_dict.items():
+      self._condition_list.append(Condition(key, condition))
+    
+  def update_action_list(self, action_dict):
+    self._action_list.clear()
+    for key, action in action_dict.items():
+      self._action_list.append(Action(key, action))
+
+  @property
+  def id(self) -> str:
+    return self._id
+  
+  @id.setter
+  def id(self, new_id):
+    self._id = new_id
+  
+  @property
+  def uuid(self) -> str:
+    return self._uuid
+  
+  @uuid.setter
+  def uuid(self, new_uuid):
+    self._uuid = new_uuid
+  
+  @property
+  def name(self):
+    return self._name
+  
+  @name.setter
+  def name(self, new_name):
+    self._name = new_name
+
+  @property
+  def parent(self):
+    if self._parent == None:
+      return  {"folder": [2]}
+    return self._parent
+  
+  @parent.setter
+  def parent(self, new_parent):
+    self._parent = new_parent
+
+  @property
+  def cycle(self) -> int:
+    return self._cycle
+  
+  @cycle.setter
+  def cycle(self, new_cycle):
+    self._cycle = new_cycle
+  
+  @property
+  def device(self) -> dict:
+    return self._device
+  
+  @device.setter
+  def device(self, new_device):
+    self._device = new_device
+  
+  @property
+  def event(self) -> list:
+    return self._event
+  
+  @event.setter
+  def event(self, new_event):
+    self._event = new_event
+
+  @property
+  def trigger(self) -> list:
+    return self._trigger
+  
+  @trigger.setter
+  def trigger(self, new_trigger):
+    self._trigger = new_trigger
+  
+  @property
+  def parameter_set(self) -> list:
+    return self._parameter_set
+  
+  @parameter_set.setter
+  def parameter_set(self, new_parameter_set):
+    self._parameter_set = new_parameter_set
+
+  @property
+  def condition(self) -> list:
+    return self._condition
+  
+  @condition.setter
+  def condition(self, new_condition):
+    self._condition = new_condition
+  
+  @property
+  def action(self) -> list:
+    return self._action
+  
+  @action.setter
+  def action(self, new_action):
+    self._action = new_action
+
+  @property
+  def status(self) -> str:
+    return self._status
+  
+  @status.setter
+  def status(self, new_status):
+    self._status = new_status
+  
+  @property
+  def next(self) -> str:
+    return self._next
+  
+  @next.setter
+  def next(self, new_next):
+    self._next = new_next
+  
+  @property
+  def instruction_list(self) -> List:
+    return self._instruction_list
+  
+  @property
+  def start_time(self) -> List:
+    return self._start_time
+  
+  @property
+  def end_time(self) -> List:
+    return self._end_time
+  
+  def new_start_time(self):
+    self._start_time.append(time())
+  
+  def new_end_time(self):
+    self._end_time.append(time())
+    
+  def get_parameter_set_by_device(self, device):
+     return [parameter_set for parameter_set in self.parameter_set.values() if device == parameter_set['target']]
+
+  def get_parameter(self, name_or_value, device):
+    name_list = []
+    value_list = []
+    for parameter in self.get_parameter_set_by_device(device):
+      for key, value in parameter.items():
+        if key != 'target':
+          name_list.append(key)
+          value_list.append(str(value))
+
+    return '|'.join(name_list) if name_or_value == 'name' else '|'.join(value_list)
+  
+  def run(self):
+    print(self._name, 'run at', datetime.now())
+    self._status = 1
+    self._start_time.append(time())
+  
+  def start(self):
+    self.status = 1
+  
+  def stop(self):
+    self.status = 2
+
+  def get_match_action_list(self, match_condition_list):
+    return map(lambda condition: [x for x in self._action_list if condition.id in x.get_condition_list()], match_condition_list)
+  
+  def get_match_action(self, condition_id):
+    return [action for action in self._action_list if condition_id in action.condition]
+
+  def do_action(self, action): 
+    for instruction in action.get_instruction_list():
+      self._instruction_list.append(instruction)
+
+  def check_condition(self, **kwargs):
+    kwargs['task_start_time'] = self._start_time
+    return [condition for condition in self._condition_list if  condition.match_or_not(**kwargs)]
+  
+  def get_task_info(self, action):
+    _type = action.type
+    if _type == 'stop':
+      _type = 'interrupt'
+
+    return {
+      'device': action.target,
+      'parameter': self.get_parameter_set_by_device(action.target),
+      'file_name': self._name + '-' + str(action.target),
+      'parent': self.parent,
+      'instruction': _type
+    }
+  
+  def as_json(self):
+    return {
+      'id': self.id,
+      'name': self.name,
+      'parent': self.parent,
+      'cycle': self.cycle,
+      'device': self.device,
+      'event': self.event,
+      'trigger': self.trigger,
+      'parameter_set': self.parameter_set,
+      'condition': self.condition,
+      'action': self.action,
+      'status': self.status,
+      'next': self.next,
+    }

python/biopro/project/task_manager.py

@@ -0,0 +1,84 @@
+from json import loads as json_parse, dumps as _json_stringify
+from socket import if_nametoindex
+from typing import Dict, List, Optional, Any
+from xml.dom.expatbuilder import parseString
+import paho.mqtt.client as mqtt
+from biopro.text import *
+from .task import Task
+
+_RUNTIME_COMPILE = False
+
+def json_stringify(o: Any) -> str:
+    return _json_stringify(o, separators=(',', ':'))
+
+class TaskManager():
+    def __init__(self, task_list):
+      self._task_list = []
+      self._next_task = []
+      self._prev_task = None
+      self._running_task = None
+      
+      self.load_task_list(task_list)
+
+      # self.set_running_task(self._task_list[0])
+      # self._running_task.run()
+      self._next_task.append(self._task_list[0])
+    
+    @property
+    def task_list(self):
+      return self._task_list
+
+    @property
+    def prev_task(self):
+      return self._prev_task
+    
+    @property
+    def running_task(self):
+      return self._running_task
+    
+    @property
+    def next_task(self):
+      return self._next_task
+
+    @property
+    def check_list(self):
+      return [self._running_task, *self._next_task]
+    
+    @property
+    def check_list(self):
+      return [self._running_task, *self._next_task]
+    
+    def load_task_list(self, task_list):
+      for task in task_list:
+        task = Task(task) 
+        self._task_list.append(task)
+    
+    def set_running_task(self, task):
+      try:
+        # if there is task running & same task active ,then reject
+        if self._running_task != None and self._running_task.uuid == task.uuid:
+          return False
+
+        # save running task
+        self._prev_task = self._running_task
+        # clear next task list
+        self._next_task.clear()
+        self._running_task = task
+        self._running_task.run()
+
+        if self._prev_task != None:
+          # if previous task is still running, then need to close
+          if self._prev_task.status == 1:
+            self._prev_task.stop()
+          print('prev', 'run', self._prev_task.name, self._running_task.name)
+
+        for task_uuid in self._running_task.next:
+          _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
+          if _task != None:
+            self._next_task.append(_task)
+      except RuntimeError as e:
+        print(e)
+
+    def get_task(self, task_id):
+      return self._task_list[task_id]
+  

python/biopro/recording/file.py

@@ -8,6 +8,7 @@ import gc
 
 from biopro.util.json import JSON
 from biopro.util.stack import print_exception
+from biopro.util.logger import calculate_time
 from .data import RecordingData
 from .loader import *
 
@@ -19,6 +20,8 @@ from statistics import mean
 import random
 # from numba import jit
 
+from copy import copy
+
 def json_stringify(o) -> str:
     return _json_stringify(o, separators=(',', ':'))
 
@@ -370,6 +373,45 @@ class RecordingMetaFile(JsonSerialize):
             self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
             # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
         return None
+    
+    def update_subfile_time_size(self, database = None):
+        meta_data = {
+            'channels': str(self._channel_mask.channels()),
+            'size': str(self._size),
+            'time_duration': str(self._last_time),
+            'uuid': str(self._file_uuid),
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
+    
+    def update_subfile_raw(self, database = None):
+        meta_data = {
+            'raw_data': self._recording_sub_file,
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
+    
+    def update_subfile_mini(self, database = None):
+        meta_data = {
+            'mini_data': self._recording_sub_mini,
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
                 
     @property
     def filename(self) -> str:
@@ -517,11 +559,6 @@ class RecordingMetaFile(JsonSerialize):
             'start_time': str(_start_time),
         }
 
-        # if database is not None:
-        #     database.data_raw_create(self, f, raw_data, _channel)
-
-        # self._recording_file_ch[_channel]
-
         return f, raw_data
 
     def new_recording_mini(self, _channel: int, _start_time, scale, database = None) -> 'RecordingMini':
@@ -567,9 +604,6 @@ class RecordingMetaFile(JsonSerialize):
             'start_time': str(_start_time),
         }
 
-        # if database is not None:
-        #     database.data_mini_create(self, f, mini_data, _channel, scale)
-
         return f, mini_data
 
     def clear_recording_file(self):
@@ -628,15 +662,6 @@ class RecordingMetaFile(JsonSerialize):
             'device':        self._device,
         }
 
-        # d = self._device
-
-        # if d is not None:
-        #     ret['device'] = {
-        #         'device_name':    d.device_name,
-        #         'device_address': list(d.mac_address),
-        #         'serial_number':  d.serial_number.as_json(),
-        #     }
-
         return ret
 
 
@@ -792,14 +817,10 @@ class RecordingFile:
                 'end_time': str(_end_time),
                 'size': str(self._size)
             }
-            # if self._meta_file._id_db == 0:
-            #     _path = str(self._meta_file.filepath).replace('/', '^')
-            #     self._database.put_queue(['data_meta_id_get_by_path', _path])
-            #     # self._meta_file._id_db = self._database.put_queue(['data_meta_id_get_by_path', _path])
+
             if self._meta_file._id_db != 0:
                 _data['parent'] = self._meta_file._id_db
             self._database.put_queue(['data_raw_update', self._id_db, self._channel, _data])
-            # self._database.put_queue(['data_raw_update', self._id_db, self._channel, _data])
         self._status = False
         return None
 
@@ -965,10 +986,7 @@ class RecordingMini:
                 'end_time': str(_end_time),
                 'size': str(self._size)
             }
-            # if self._meta_file._id_db == 0:
-            #     _path = str(self._meta_file.filepath).replace('/', '^')
-            #     self._database.put_queue(['data_meta_id_get_by_path', _path])
-            #     # self._meta_file._id_db = self._database.put_queue(['data_meta_id_get_by_path', _path])
+
             if self._meta_file._id_db != 0:
                 _data['parent'] = self._meta_file._id_db
             self._database.put_queue(['data_mini_update', self._id_db, self._channel, _data])
@@ -996,7 +1014,8 @@ class RecordingFileWriter:
                  '_data_value_ch', '_close', '_data_mini_ch',
                  '_mini_scale_list', '_time_real_time', '_data_rl', '_data_db',
                  '_raw_save', '_mini_save', '_data_time_ch', '_data_value_ch_for_rl',
-                 '_data_time_ch_for_rl', '_device_id', '_send_data', '_data_mqtt_ch')
+                 '_data_time_ch_for_rl', '_device_id', '_send_data', '_data_mqtt_ch', '_id_db_save', '_raw_create_not_done',
+                 '_mini_create_not_done')
 
     def __init__(self, meta: RecordingMetaFile, device_id, database = None):
         self._meta = meta
@@ -1017,7 +1036,9 @@ class RecordingFileWriter:
 
         self._raw_save = {
             'id': {},
-            'data': {}
+            'data': {},
+            'end_time': {},
+            'size': {}
         }
         self._mini_save = {
             '10': {
@@ -1052,6 +1073,7 @@ class RecordingFileWriter:
         self._data_value_ch_for_rl = {}
         self._data_time_ch_for_rl = {}
         self._data_time_ch = {}
+        self._id_db_save = {}
 
         # mini data
         self._data_mini_ch = {}
@@ -1068,12 +1090,15 @@ class RecordingFileWriter:
 
         # splitting
         self.splitting_threshold_time = 30 * 60 * 1000  # one minute
-        self.splitting_threshold_size = 16 * 16 * 1024  #  16 * 16KB
+        self.splitting_threshold_size = 16 * 1024  #  16 * 16KB
 
         self._writer_batch_size = 8192 
 
         self._splitting_size = None
 
+        self._raw_create_not_done = True
+        self._mini_create_not_done = True
+
 
     @property
     def meta_file(self) -> RecordingMetaFile:
@@ -1123,7 +1148,7 @@ class RecordingFileWriter:
                     self._meta._size += self._recording_file_dict[ch]._size
             # self._data_db.clear()
             if self._database is not None:
-                self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
+                self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data'], self._id_db_save])
                 # self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
             self._recording_file_dict.clear()
         for scale in self._mini_scale_list:
@@ -1289,7 +1314,8 @@ class RecordingFileWriter:
                     self._data_db[c].append(str(v))
                     self._time_now = int(t)
         return
-
+    
+    # @calculate_time(1)
     def write(self, data: Union[bytes, RecordingData, List[bytes], List[RecordingData]], mqtt_thread) -> int:
         # check size
         ths = self.splitting_threshold_size
@@ -1348,42 +1374,54 @@ class RecordingFileWriter:
                 
                 self.get_data_iter(d, mqtt_thread)
 
-            data_save = False
-            mini_save = False
             if len(self._recording_file_dict) > 0:
                 for ch in self._data_db.keys():
                     if self._time_now - self._time_real_time[ch] > 1000000:
                         self._send_data[ch] = True
                         self._time_real_time[ch] = self._time_now
-                    # # if self._time_now - self._time_real_time[ch] > 500000:
-                    # self._data_rl[ch].append(str(self._time_now))
-                    # mes = ' '.join(self._data_rl[ch])
-                    # # print(mes)
-                    # # if mqtt_thread is not None:
-                    # #     mqtt_thread.publish('data_server/device_data_stream/' + str(self._device_id) + '/' + str(ch), mes)
-                    # # mqtt_queue.put([self._device_id, ch, mes])
-                    # mqtt_thread[ch].on_message(mes)
-                    # self._data_rl[ch].clear()
-                    # # self._time_real_time[ch] = self._time_now
+
+            for ch in self._recording_file_dict:
+                if self._recording_file_dict[ch]._id_db == 0:
+                    return None
+            
+            for ch in self._data_db.keys():
+                for scale in self._mini_scale_list:
+                    if  self._recording_mini_dict[str(scale)][ch]._id_db == 0:
+                        return None
+            
+            if self._raw_create_not_done :
+                self._raw_create_not_done = False
+                self._meta.update_subfile_raw(database = self._database)
+            
+            if self._mini_create_not_done :
+                self._mini_create_not_done = False
+                self._meta.update_subfile_mini(database = self._database)
+
+            data_save = False
+            mini_save = False
+            if len(self._recording_file_dict) > 0:
+                for ch in self._data_db.keys():
                     if self._time_now - self._time[ch] > 5000000:
                         if self._recording_file_dict[ch]._status:
                             _data = ' '.join(self._data_db[ch])
                             write_sz = self._recording_file_dict[ch].write(_data, self._channel_list)
-                            sz = sz + write_sz
                             self._raw_save['data'][ch] = _data
                             self._raw_save['id'][ch] = self._recording_file_dict[ch]._id_db
-                            data_save = True
+                            self._raw_save['end_time'][ch] = self._time_now
+                            self._raw_save['size'][ch] = self._recording_file_dict[ch]._size
                             self._data_db[ch].clear()
                             self._time[ch] = self._time_now
-                            self._splitting_size += sz
                             self._meta._last_time = self._time_now
-                            self._recording_file_dict[ch].update_endtime(self._time_now)
+                            self._splitting_size += write_sz
+                            data_save = True
                     if len(self._data_mini_ch[ch]['1000']['mean']) >= 10:
                         mini_save = True
                         for scale in self._mini_scale_list:
+                            str_mean = [str(int) for int in self._data_mini_ch[ch][str(scale)]['mean']]
+                            data_mean = str(self._data_mini_ch[ch][str(scale)]['start_time']) + ' ' + ' '.join(str_mean) + '"***"'
                             self._mini_save[str(scale)]['id'][ch] = self._recording_mini_dict[str(scale)][ch]._id_db
                             self._mini_save[str(scale)]['start_time'][ch] = str(self._data_mini_ch[ch][str(scale)]['start_time'])
-                            self._mini_save[str(scale)]['data_mean'][ch] = self._data_mini_ch[ch][str(scale)]['mean'].copy()
+                            self._mini_save[str(scale)]['data_mean'][ch] = data_mean
                             # self._mini_save[str(scale)]['data_random'][ch] = self._data_mini_ch[ch][str(scale)]['random'].copy()
                             # self._mini_save[str(scale)]['data_bar'][ch] = self._data_mini_ch[ch][str(scale)]['bar'].copy()
                             self._recording_mini_dict[str(scale)][ch].write(self._mini_save[str(scale)]['data_mean'][ch])
@@ -1394,26 +1432,25 @@ class RecordingFileWriter:
 
                 if data_save is True:
                     if self._database is not None:
-                        self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
-                        self._meta.update_subfile(database = self._database)
+                        recording_input = ['data_raw_recording_new', copy(self._raw_save['id']), copy(self._channel_list), copy(self._raw_save['data']), copy(self._raw_save['end_time']), copy(self._raw_save['size'])]
+                        self._database.put_queue(recording_input)
+                        self._meta.update_subfile_time_size(database = self._database)
                 if mini_save is True:
                     if self._database is not None:
                         for scale in self._mini_scale_list:
-                            self._database.put_queue(['data_mini_recording', self._mini_save[str(scale)]['id'], self._channel_list, self._mini_save[str(scale)]['start_time'], self._mini_save[str(scale)]['data_mean']])
-                        self._meta.update_subfile(database = self._database)
-            
-
+                            self._database.put_queue(['data_mini_recording_new', copy(self._mini_save[str(scale)]['id']), self._channel_list, copy(self._mini_save[str(scale)]['data_mean'])])
+                        self._meta.update_subfile_time_size(database = self._database)
         del data
 
         return None
 
 
     def _switch_recording_file(self):
-        # if self._recording_file is not None:
-        #     self._recording_file.close()
-        
+        self._raw_create_not_done = True
+
         if len(self._recording_file_dict) > 0:
             for ch in self._recording_file_dict.keys():
+                self._id_db_save[ch] = self._recording_file_dict[ch]._id_db
                 self._recording_file_dict[ch].close(self._time_now)
                 self._meta._size += self._recording_file_dict[ch]._size
                 
@@ -1429,16 +1466,16 @@ class RecordingFileWriter:
 
         if self._database is not None:
             self._database.put_queue(['data_raw_create', raw_data_dict, self._channel_list, self._device_id])
-            # self._database.put_queue(['data_raw_create', self._meta, self._recording_file_dict, raw_data_dict, self._channel_list])
 
         self._meta._last_time = self._time_now
-        self._meta.update_subfile(database = self._database)
+        # self._meta.update_subfile(database = self._database)
 
         self._splitting_size = 0
 
         return None
 
     def _switch_recording_mini(self, scale):
+        self._mini_create_not_done = True
         
         if len(self._recording_mini_dict[str(scale)]) > 0:
             for ch in self._recording_mini_dict[str(scale)].keys():
@@ -1456,14 +1493,12 @@ class RecordingFileWriter:
 
         if self._database is not None:
             self._database.put_queue(['data_mini_create', mini_data_dict, self._channel_list, scale, self._device_id])
-            # self._database.put_queue(['data_mini_create', self._meta, self._recording_mini_dict[str(scale)], mini_data_dict, self._channel_list, scale])
             
         self._meta._last_time = self._time_now
-        self._meta.update_subfile(database = self._database)
+        # self._meta.update_subfile(database = self._database)
         return None
 
     def update_meta_id(self, _id):
-        # print('update meta')
         self._meta._id_db = _id
         return None
     

python/biopro/server/_identify.py

@@ -9,23 +9,9 @@ _jwt = None
 
 def controller_device_id() -> str:
     ### device ID
-    return 'b8:27:eb:52:ea:97'
-    ret = None
-    try:
-        with open('/etc/BPS/device_id') as f:
-            for line in f:
-                if line.startswith('#'):
-                    continue
-
-                ret = line.strip()
-                break
-    except FileNotFoundError:
-        pass
-
-    if ret is None or len(ret) == 0:
-        return str(uuid.uuid1())
-    else:
-        return ret
+    f = open("/sys/class/net/eth0/address", "r")
+    mac = f.read()[:-1]
+    return mac
 
 def get_api_jwt() -> str:
     global _jwt

python/biopro/server/controller.py

@@ -1335,3 +1335,6 @@ def to_device_info(content: Union[str, ADDRESS, JSON_OBJECT]) -> DeviceResponseI
     return DeviceResponseInfo(None,
                               serial_number=serial,
                               mac_address=address)
+
+def run_project(self, project) -> bool:
+    return False

python/biopro/server/data.py

@@ -104,18 +104,9 @@ class DataServer(SocketServer, DataAPI):
                                       self.log_verbose,
                                       'MQTT-data-server')
         # api socket
-        self._queue_spi = queue.Queue()
-        # self._queue_spi_dict = {}
         self._queue_ds_dict = {}
         self._queue_db = Queue()
-        self._queue_db_error = Queue()
-        # self._queue_ds = Queue()
-
-        # if len(self._queue_spi_dict) == 0:
-        #     self._queue_spi_dict[4] = Queue()
-        #     self._queue_spi_dict[5] = Queue()
-        #     self._queue_spi_dict[6] = Queue()
-        #     self._queue_spi_dict[7] = Queue()
+        self._queue_msg = Queue()
 
         if len(self._queue_ds_dict) == 0:
             self._queue_ds_dict[4] = Queue()
@@ -123,7 +114,7 @@ class DataServer(SocketServer, DataAPI):
             self._queue_ds_dict[6] = Queue()
             self._queue_ds_dict[7] = Queue()
 
-        self.database_process = DataBaseProcess('data_server', self.log_verbose, self._queue_db, self._queue_ds_dict, self._queue_db_error)
+        self.database_process = DataBaseProcess('data_server', self.log_verbose, self._queue_db, self._queue_ds_dict, self._queue_msg)
         self.database_process.start()
 
     @logging_info
@@ -146,7 +137,6 @@ class DataServer(SocketServer, DataAPI):
         try:
             self._stop_runtime()
             self.stop_sync()
-            self._queue_spi.queue.clear()
         finally:
             self._configurations.clear()
 
@@ -185,9 +175,6 @@ class DataServer(SocketServer, DataAPI):
 
         self._configurations.clear()
 
-        with CacheClient() as client:
-            client.clear()
-
         # reopen spi, which has close at close()
         if spi_mode is None:
             spi_mode = self._spi_mode
@@ -417,7 +404,7 @@ class DataServer(SocketServer, DataAPI):
                 c.join()
                 self._spi.set_wait_flag(c._device, True)
             data_runtime_process = RecordingProcess('data_server', self.log_verbose, device_id, 
-                                                    Queue(), self._queue_ds_dict[int(device_id)], meta_file,
+                                                    Queue(), self._queue_ds_dict[int(device_id)], self._queue_msg, meta_file,
                                                     json_stringify(_device), _parameter, _parent, _recording_file_name,
                                                     data_format, self.socket_mqtt_ip, self.socket_mqtt_port,
                                                     database = self.database_process )
@@ -618,8 +605,18 @@ class DataServer(SocketServer, DataAPI):
         return
 
     def open_cache_client(self):
-        self._cache_client = None
-        return
+        self.log_verbose('open cache client')
+        try:
+            client = CacheClient()
+            client.open_socket()
+
+        except RuntimeError as e:
+            self.log_warn(e)
+
+        else:
+            client.clear()
+
+            self._cache_client = client
 
     def _ensure_cache_client(self) -> Optional[CacheClient]:
         if self._cache_client is None:
@@ -674,15 +671,19 @@ class DataServer(SocketServer, DataAPI):
         return ret
 
     def rec_update(self) -> bool:
-
-        device_id = self._queue_db_error.get()
-        self.mqtt_thread.broadcast_command('runtime error: ' + str(device_id))
-        content = {
-            'header': 'device_instruction/0',
-            'device': device_id,
-            'instruction': 'interrupt'
-        }
-        self.mqtt_thread.publish('device_instruction', json_stringify(content), inter = True)
+        ds_db_msg = self._queue_msg.get()
+        with CacheClient() as client:
+            if isinstance(ds_db_msg, List):
+                if ds_db_msg[0] == 'ds':
+                    client.send_command('device_instruction', ds_db_msg[1], ds_db_msg[2])
+            else:
+                self.mqtt_thread.broadcast_command('runtime error: ' + str(ds_db_msg))
+                content = {
+                    'header': 'device_instruction/0',
+                    'device': ds_db_msg,
+                    'instruction': 'interrupt'
+                }
+                self.mqtt_thread.publish('device_instruction', json_stringify(content), inter = True)
 
         return True
 
@@ -1179,20 +1180,20 @@ class SpiRuntimeThread(ServerThread):
 
         run_time = time() - self._timer
 
+        real_run_time = run_time
+
         if run_time > 0.045:
-            print('time, recv_data_form_spi_routine_time', time(), run_time)
+            # print('time, recv_data_form_spi_routine_time', time(), run_time)
             run_time = 0.045
 
-        if server.sync_started:
-            event.wait(self._interval - run_time)
-            sync.set_pin_mem_sel(True)
-            sleep(0.005)
-            return
-        else:
-            event.wait(self._interval - run_time)
-            sync.set_pin_mem_sel(True)
-            self.close()
-            return
+        if run_time >= 0.030:
+            print('time, recv_data_form_spi_routine_time >= 0.030', 'device:', c, datetime.now(), time(), real_run_time)
+
+        event.wait(self._interval - run_time)
+        sync.set_pin_mem_sel(True)
+        sleep(0.005)
+
+        return
 
 class RecRuntimeThread(ServerThread):
     def __init__(self, server: DataServer):

python/biopro/server/database.py

@@ -15,13 +15,15 @@ from biopro.util.json import JSON_OBJECT
 from .socket import ServerThread
 
 import psycopg2
-# from psycopg2.pool import ThreadedConnectionPool
+from psycopg2.extras import execute_batch
 from multiprocessing import Process, Queue
 
 import biopro.server._identify
 
+from time import time
 
 from concurrent.futures import ThreadPoolExecutor, as_completed
+from biopro.util.logger import calculate_time
 
 _RUNTIME_COMPILE = False
 
@@ -50,7 +52,7 @@ class DataBaseProcess(Process):
         self._api_token = None
         self._api_header = None
         self.log_verbose = log_verbose
-        self._executor = ThreadPoolExecutor(max_workers=4)
+        self._executor = ThreadPoolExecutor(max_workers=8)
 
         self._psql_multi_thread = None
         self._psql_conn_pool = None
@@ -62,6 +64,15 @@ class DataBaseProcess(Process):
 
         self._is_close = False
 
+
+        self._meta_write_sql_str = None
+
+        self._data_raw_create_sql_str = None
+        self._data_raw_update_sql_str = None
+        self._data_raw_recording_sql_str = 'UPDATE "public"."%s_recording_data_raws" SET data = concat(data, %s) where id = %s'
+        self._new_data_raw_recording_sql_str = 'UPDATE "public"."%s_recording_data_raws" SET data = concat(data, %s), end_time=%s, size=%s where id = %s'
+        self._data_mini_recording_sql_str = 'UPDATE "public"."%s_recording_data_minis" SET data_mean = concat(data_mean, %s) where id = %s'
+
     @property
     def db_host(self) -> str:
         return self._db_host
@@ -149,7 +160,8 @@ class DataBaseProcess(Process):
         if callable(getattr(self, do)):
             getattr(self, do)(*args)
         return None
-    
+
+    # @calculate_time(1)
     def data_meta_write(self, _data: JSON_OBJECT, device_id, _uuid = None, _id = None):
         if _id > 0:
             sql_str = 'UPDATE "public"."recording_data_metas" SET '
@@ -252,6 +264,7 @@ class DataBaseProcess(Process):
         # _conn.close()
         return None
 
+    # @calculate_time()
     def data_meta_get(self, _path = None, _id = None):
         if _id is not None:
             sql_str = 'SELECT * FROM "public"."recording_data_metas" WHERE id = %s'
@@ -286,6 +299,7 @@ class DataBaseProcess(Process):
         # _conn.close()
         return None
 
+    # @calculate_time()
     def data_meta_id_get_by_path(self, _path = None):
         ret = None
         if _path is not None:
@@ -307,39 +321,29 @@ class DataBaseProcess(Process):
         # _conn.close()
         return None
 
+    # @calculate_time()
     def data_raw_create(self, _data_dict, _channel_list, device_id):
-
-        for _channel in _channel_list:
-            sql_str = 'INSERT INTO "public"."' + str(_channel) + '_recording_data_raws" ('
-            sql_set = []
-            for item in _data_dict[_channel].keys():
-                sql_str = sql_str + str(item) + ', '
-                if isinstance(_data_dict[_channel][item], dict):
-                    sql_set.append(json_stringify(_data_dict[_channel][item]))
-                else:
-                    sql_set.append(str(_data_dict[_channel][item]))
-
-            sql_str = sql_str[0:-2] + ') VALUES ('
-            for item in _data_dict[_channel].keys():
-                sql_str = sql_str + '%s, '
-
-            sql_str = sql_str[0:-2] + ') RETURNING id'
-            sql_cursor = self._psql_conn.cursor()
-
-            try:
-                sql_cursor.execute(sql_str, sql_set)
-            except RuntimeError as e:
-                print('data_raw_create error', e)
-                self._psql_conn.commit()
-                sql_cursor.close()
-                self._queue_error.put(device_id)
-            finally:
-                self._queue_ds[int(device_id)].put(['update_raw_dict_id', _data_dict[_channel]['uuid'], _channel, int(sql_cursor.fetchone()[0])])
-                self._psql_conn.commit()
-                sql_cursor.close()
+        if self._data_raw_create_sql_str == None:
+            sql_str_list = []
+            key_list = _data_dict[_channel_list[0]].keys()
+            key_str = ','.join(key_list)
+            values = ','.join(['%s'] * len(key_list))
+            sql_str_list = ['INSERT INTO "public"."{channel}_recording_data_raws" (', key_str, ') VALUES (', values, ') RETURNING id']
+            self._data_raw_create_sql_str = ''.join(sql_str_list)
+        try:
+            with self._psql_conn as conn:
+                    with conn.cursor() as sql_cursor:
+                        for _channel in _channel_list:
+                            sql_set = list(map(lambda x: str(x), _data_dict[_channel].values()))
+                            sql_cursor.execute(self._data_raw_create_sql_str.format(channel = _channel), sql_set)
+                            self._queue_ds[int(device_id)].put(['update_raw_dict_id', _data_dict[_channel]['uuid'], _channel, int(sql_cursor.fetchone()[0])])
+        except (psycopg2.Error, RuntimeError) as e:
+            print('data_raw_create error', e)
+            self._queue_error.put(device_id)
 
         return True
 
+    # @calculate_time()
     def data_raw_update(self, _id, _channel, _data: JSON_OBJECT):
         sql_str = 'UPDATE "public"."' + str(_channel) + '_recording_data_raws" SET '
         sql_set = []
@@ -357,30 +361,36 @@ class DataBaseProcess(Process):
         sql_cursor.execute(sql_str, sql_set)
         self._psql_conn.commit()
         sql_cursor.close()
-        
         return None
 
-    def data_raw_recording(self, _id_dict, _channel_list, _data_dict):
-        for _channel in _channel_list:
-            compressed_value = _data_dict[_channel] + '"***"'
-            # compressed_value = bytes(_data_dict[_channel],'utf-8')
-            # compressed_value = zlib.compress(compressed_value)
-            # compressed_value = base64.b64encode(compressed_value).decode() + '"***"'
-            # compressed_value = _data + '"***"'
-            sql_str = 'UPDATE "public"."' + str(_channel) + '_recording_data_raws" SET data = concat(data, %s) where id = %s'
-            sql_set = [compressed_value, _id_dict[_channel]]
-
-            sql_cursor = self._psql_conn.cursor()
-            sql_cursor.execute(sql_str, sql_set)
-            self._psql_conn.commit()
-            sql_cursor.close()
-
-            del _data_dict[_channel]
-            del compressed_value
-            gc.collect()
-            # _conn.close()
+    # @calculate_time()
+    def data_raw_recording(self, _id_dict, _channel_list, _data_dict, _id_db_save):
+        try:
+            with self._psql_conn as conn:
+                with conn.cursor() as sql_cursor:
+                    para_list = []
+                    for _channel in _channel_list:
+                        temp_id = _id_dict[_channel] if _id_dict[_channel] != 0 else _id_db_save[_channel]
+                        para_list.append([_channel, _data_dict[_channel] + '"***"', temp_id])
+                    execute_batch(sql_cursor, self._data_raw_recording_sql_str, para_list)
+        except psycopg2.Error as e:
+            print('recording error', e)
         return None
-
+    
+    # @calculate_time(1)
+    def data_raw_recording_new(self, _id_dict, _channel_list, _data_dict, _end_time_dict, _size_dict):
+        try:
+            para_list = []
+            for _channel in _channel_list:
+                para_list.append([_channel, _data_dict[_channel] + '"***"', _end_time_dict[_channel], _size_dict[_channel], _id_dict[_channel]])
+            with self._psql_conn as conn:
+                with conn.cursor() as sql_cursor:
+                    execute_batch(sql_cursor, self._new_data_raw_recording_sql_str, para_list)
+        except psycopg2.Error as e:
+            print('recording error', e)
+        return None
+    
+    # @calculate_time()
     def data_mini_create(self, _data_dict, _channel_list, _scale, device_id):
         for _channel in _channel_list:
             sql_str = 'INSERT INTO "public"."' + str(_channel) + '_recording_data_minis" ('
@@ -414,42 +424,43 @@ class DataBaseProcess(Process):
         # _conn.close()
         return True
 
+    # @calculate_time()
     def data_mini_recording(self, _id_dict, _channel_list, _start_time_dict, _data_mean_dict):
-        for _channel in _channel_list:
-            data = _data_mean_dict.get(_channel)
-            if data is not None:
-                if len(data) != 0:
-                    str_mean = [str(int) for int in _data_mean_dict[_channel]]
-                    data_mean = _start_time_dict[_channel] + ' ' + ' '.join(str_mean)
-                    # data_random = _start_time_dict[_channel] + ' ' + ' '.join(_data_random_dict[_channel])
-                    # data_bar = _start_time_dict[_channel] + ' ' + ' '.join(_data_bar_dict[_channel])
+        with self._psql_conn as conn:
+            with self._psql_conn.cursor() as sql_cursor:
+                for _channel in _channel_list:
+                    data = _data_mean_dict.get(_channel)
+                    if data is not None:
+                        if len(data) != 0:
+                            str_mean = [str(int) for int in _data_mean_dict[_channel]]
+                            data_mean = _start_time_dict[_channel] + ' ' + ' '.join(str_mean)
 
-                    compressed_mean = data_mean + '"***"'
-
-                    # compressed_mean = bytes(data_mean,'utf-8')
-                    # compressed_mean = zlib.compress(compressed_mean)
-                    # compressed_mean = base64.b64encode(compressed_mean).decode() + '"***"'
-
-                    # compressed_random = bytes(data_bar,'utf-8')
-                    # compressed_random = zlib.compress(compressed_random)
-                    # compressed_random = base64.b64encode(compressed_random).decode() + '"***"'
-
-                    # compressed_random = bytes(data_random,'utf-8')
-                    # compressed_random = zlib.compress(compressed_random)
-                    # compressed_random = base64.b64encode(compressed_random).decode() + '"***"'
                     sql_str = 'UPDATE "public"."' + str(_channel) + '_recording_data_minis" SET data_mean = concat(data_mean, %s) where id = %s'
-                    sql_set = [compressed_mean, _id_dict[_channel]]
-
-                    sql_cursor = self._psql_conn.cursor()
+                    sql_set = [data_mean + '"***"', _id_dict[_channel]]
                     sql_cursor.execute(sql_str, sql_set)
-                    self._psql_conn.commit()
-                    sql_cursor.close()
 
-                    del str_mean, _start_time_dict[_channel], _data_mean_dict[_channel], data_mean, compressed_mean
-                    gc.collect()
+                    del str_mean, data_mean
         
+        for _channel in _channel_list:
+            del _start_time_dict[_channel], _data_mean_dict[_channel]
+        gc.collect()
+
         return True
     
+    # @calculate_time(1)
+    def data_mini_recording_new(self, _id_dict, _channel_list, _data_mean_dict):
+        try:
+            para_list = []
+            for _channel in _channel_list:
+                para_list.append([_channel, _data_mean_dict[_channel], _id_dict[_channel]])
+            with self._psql_conn as conn:
+                with conn.cursor() as sql_cursor:
+                    execute_batch(sql_cursor, self._data_mini_recording_sql_str, para_list)
+        except psycopg2.Error as e:
+            print('recording error', e)
+        return None
+
+    # @calculate_time()
     def data_mini_update(self, _id, _channel, _data: JSON_OBJECT):
         sql_str = 'UPDATE "public"."' + str(_channel) + '_recording_data_minis" SET '
         sql_set = []
@@ -469,3 +480,74 @@ class DataBaseProcess(Process):
         sql_cursor.close()
 
         return True
+
+    def data_meta_update_raw_empty_channel(self, meta_id, channel_list):
+        try:
+            sql_str = "UPDATE recording_data_metas SET raw_data = jsonb_set(raw_data, '{%s}', '[]'), mini_data = jsonb_set(mini_data, '{%s}', '{\"10\": [], \"100\": [], \"1000\": []}') WHERE id = %s;"
+            sql_set = []
+            for channel in channel_list:
+                sql_set.append([channel, channel, meta_id])
+            
+            with self._psql_conn as conn:
+                with conn.cursor() as sql_cursor:
+                    execute_batch(sql_cursor, sql_str, sql_set)
+        except psycopg2.Error as e:
+            print('e', e)
+
+        return True
+    
+    # @calculate_time()
+    def data_meta_update_channel_raw_id(self, meta_id, channel, raw_id):
+        try:
+            with self._psql_conn as conn:
+                with conn.cursor() as sql_cursor:
+                    sql_str = "UPDATE recording_data_metas SET raw_data = jsonb_insert(raw_data, '{%s, -1}', '%s', TRUE) WHERE id = %s;"
+                    sql_set = [channel, raw_id, 571]
+                    sql_cursor.execute(sql_str, sql_set)
+        except psycopg2.Error as e:
+            print('e', e)
+
+        return True
+
+    # @calculate_time()
+    def data_meta_update_all_channel_raw_id(self, meta_id:str, raw_id_dict:dict):
+        try:
+            sql_str = "UPDATE recording_data_metas SET raw_data = jsonb_insert(raw_data, '{%s, -1}', '%s', TRUE) WHERE id = %s;"
+            sql_set = []
+            for ch in raw_id_dict.keys():
+                sql_set.append([ch, raw_id_dict[ch], meta_id])
+            with self._psql_conn as conn:
+                    with conn.cursor() as sql_cursor:
+                        execute_batch(sql_cursor, sql_str, sql_set)
+        except psycopg2.Error as e:
+            print('e', e)
+
+        return True
+    
+    def data_meta_update_channel_mini_id(self, meta_id, channel, scale, mini_id):
+        try:
+            with self._psql_conn as conn:
+                    with conn.cursor() as sql_cursor:
+                        sql_str = "UPDATE recording_data_metas SET mini_data = jsonb_insert(mini_data, '{%s, %s, -1}', '%s', TRUE) WHERE id = %s;"
+                        sql_set = [channel, scale, mini_id, meta_id]
+                        sql_cursor.execute(sql_str, sql_set)
+        except psycopg2.Error as e:
+            print('e', e)
+
+        return True
+    
+    # @calculate_time()
+    def data_meta_update_all_channel_mini_id(self, meta_id, mini_id_dict):
+        try:
+            sql_str = "UPDATE recording_data_metas SET mini_data = jsonb_insert(mini_data, '{%s, %s, -1}', '%s', TRUE) WHERE id = %s;"
+            sql_set = []
+            for ch in mini_id_dict.keys():
+                for scale in mini_id_dict[ch].keys():
+                    sql_set.append([ch, scale, mini_id_dict[ch][scale], meta_id])
+            with self._psql_conn as conn:
+                with conn.cursor() as sql_cursor:
+                    execute_batch(sql_cursor, sql_str, sql_set)
+        except psycopg2.Error as e:
+            print('e', e)
+
+        return True

python/biopro/server/main.py

@@ -30,6 +30,7 @@ from .api import ApiRequests
 from biopro.api.auth import AuthAPI
 from biopro.api.controller import ControllerAPI
 from biopro.api.device import DeviceAPI
+from biopro.project.project_manager import ProjectManager
 ### do not import Websocket mode
 ###from .websocket import WebsocketThread
 
@@ -42,7 +43,7 @@ def _fc(c):
     return c % len(FORE_COLOR) + FORE_COLOR[0]
 
 
-class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler):
+class ControlServer(SocketServer, ControlServerAPI):
     """Data Server"""
 
     def __init__(self, *options):
@@ -59,7 +60,7 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
 
         :param options: server options
         """
-        super().__init__((ControlAPI, CacheAPI), 'Controller', self.ADDR,
+        super().__init__((ControlAPI), 'Controller', self.ADDR,
                          socket_listen=10,
                          thread_pool_count=16)
 
@@ -86,21 +87,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         data_options.repository = device_option.repository
         self.data_server = DataServerProcess(data_options)
 
-        # experimental protocol
-        # exp_options = ExpManagerOption.get_options(*options)
-        # self.exp_manager = ExpManager(self, exp_options)
-
-        # cache
-        self.cache_manager = CacheManager(self,
-                                          c.cache_server_cache_size,
-                                          # time unit from sec to ms
-                                          c.cache_server_cache_time * 1000)
-
-        # websocket server ###
-        ### self.websocket_thread = WebsocketThread(self,
-        ###                                                         c.websocket_address,
-        ###                                                         c.websocket_port)
-
         # remote server / MQTT
         self.mqtt_thread = None
         if not c.flag_disable_remote_server:
@@ -111,17 +97,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
                                           self.log_verbose,
                                           'MQTT-control-server')
 
-        # routine trash thread
-        self._routine_trash_thread = None
-        # if not c.flag_disable_routine_trash:
-        #     self._routine_trash_thread = RoutineTrashThread(self._file_manager,
-        #                                                     c.trash_routine_time,
-        #                                                     c.trash_expire_time,
-        #                                                     c.trash_remove_expire_time)
-
-        # routine data routine
-        self._data_stream_thread = None
-
         # LED control
         self.led_thread = LEDControlThread(disable=c.flag_disable_led_control,
                                            led_count=c.led_count,
@@ -130,6 +105,8 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         # device detect
         self._detect_device_thread = RoutineConnectDeviceThread(self._device_manager, self.mqtt_thread, self.led_thread, 3)
 
+        self._project_manager = ProjectManager(self.device_manager, self.mqtt_thread)
+
         if not c.flag_disable_led_control:
             self.led_thread.set_state(LED.COLOR_RED)
 
@@ -143,8 +120,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         self._session = {}
         self._user_session_expire = c.user_session_expire_days * 24 * 60 * 60  # sec
 
-        # temp use variable
-
         # indicate those device together
         self._device_instruction_group = None
 
@@ -154,8 +129,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         # _api request build
         self._api = ApiRequests()
 
-        
-
     # init method
 
     def _init_file_manager(self, option: ControlServerOptions) -> FileManager:
@@ -193,6 +166,11 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
     def device_manager(self) -> DeviceManager:
         return self._device_manager
 
+    @property
+    def project_manager(self) -> ProjectManager:
+        return self._project_manager
+
+
     # server setup
 
     def setup(self) -> None:
@@ -242,32 +220,16 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         # device manager reset
         self.submit_thread(self._setup_device)
 
-        # self.submit_thread(self._setup_controller)
         self._setup_controller()
 
         # self.run_thread(self._detect_device_thread)
 
-        # experimental protocol manager
-        # if not self._controller_options.flag_disable_exp_manager:
-        #     self.exp_manager.setup()
-        #     self.exp_manager.reload_protocol()
-
-        # websocket server
-        ### self.log_verbose('setup websocket server', pc(self.websocket_thread.websocket_address, YELLOW))
-        # websocket server thread run ###
-        ### self.run_thread(self.websocket_thread)
-
         # broadcast greeting
         self.broadcast_command(DataMessage.greeting())
 
-        # routine trashing
-        if self._routine_trash_thread is not None:
-            self.run_thread(self._routine_trash_thread)
-
         # remote server
         if self.mqtt_thread is not None:
             self.mqtt_thread.start()
-            # self.run_thread(self.mqtt_thread)
 
     def _setup_file_manager(self):
         self.log_verbose('setup file manager')
@@ -442,90 +404,14 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         self.broadcast_command('shutdown')
         self.data_server.stop_process(external_interrupt)
 
-        self._stop_data_stream_thread()
-
         self.device_manager.shutdown()
 
         self.file_manager.shutdown(umount_external=True)
 
-        self.cache_manager.shutdown()
-
-        ###    self.websocket_thread.close()
-
         self.led_thread.close()
 
         if self.mqtt_thread is not None:
             self.mqtt_thread.shutdown()
-            # self.mqtt_thread.close()
-
-    # user session
-
-    def new_user_session(self) -> str:
-        session = UserSession(None)
-
-        self._session[session.user_session] = session
-
-        self.log_info('new user session', session.user_session)
-
-        return session.user_session
-
-    @logging_info
-    def del_user_session(self, user_session: Optional[str] = None):
-        if user_session is None:
-            self._session.clear()
-
-        else:
-            try:
-                del self._session[user_session]
-            except KeyError:
-                pass
-
-    def get_user_session(self,
-                         user_session: Optional[str],
-                         new_session = False,
-                         allow_empty = False) -> Optional[UserSession]:
-        """
-
-        :param user_session: user session ID
-        :param new_session: new a user session if *user_session* not found.
-        :param allow_empty: consider empty *user_session* None
-        :return: user session
-        """
-
-        if user_session is None:
-            session = None
-
-        elif len(user_session) == 0:
-            if allow_empty:
-                session = None
-            else:
-                raise None
-
-        else:
-            session = self._session.get(user_session, None)
-
-        if session is not None:
-            session.time()
-
-        elif new_session:
-            session = UserSession(user_session)
-
-            self._session[session.user_session] = session
-
-            self.log_info('new user session', session.user_session)
-
-        return session
-
-    def expire_user_session(self):
-        current_time = time()
-
-        for user_session in list(self._session.keys()):
-            session = self._session[user_session]
-
-            if session.time(update=False) - current_time > self._user_session_expire:
-                del self._session[user_session]
-
-    # general post action
 
     def _post_device_list(self) -> List[CompletedDevice]:
         """general post action for getting list of connected devices.
@@ -862,12 +748,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
     def get_device_info(self, device: int) -> Optional[CompletedDevice]:
         return super().get_device_info(device)
 
-    # @logging_info
-    # def device_call(self, device: int) -> bool:
-    #     self.device_manager.call_device(device)
-    #
-    #     return True
-
     @logging_info
     def device_instruction_all(self, device: int) -> List[str]:
         return self.device_manager.list_device_instruction(device)
@@ -1041,8 +921,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
 
     @logging_info
     def device_parameter(self, device: int, parameter: str, content: Optional[str] = None) -> Any:
-        # if content is not None:
-        #     self.broadcast_command('parameter:' + str(device) + '/' + parameter + '/' + content)
         return self.device_manager.handle_device_parameter_command(device, parameter, content)
 
     @logging_info
@@ -1134,249 +1012,11 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
     def device_history_delete(self, user: str, device: Optional[int]) -> bool:
         raise NotImplementedError()
 
-    # server provide method implement : file manager functions
-
     @logging_info
-    def file_clean_storage(self) -> bool:
-        return super().file_clean_storage()
-
-    @logging_info
-    def file_index(self) -> RootInfo:
-        return super().file_index()
-
-    @logging_info
-    def file_list(self, path: str) -> DirectoryInfo:
-        return super().file_list(path)
-
-    @logging_info
-    def file_list_range(self, path: str, start: int, end: int) -> DirectoryInfo:
-        return super().file_list_range(path, start, end)
-
-    @logging_info
-    def file_rename(self, path: str, content: str) -> FileInfo:
-        return super().file_rename(path, content)
-
-    @logging_info
-    def file_mkdir(self, path: str) -> DirectoryInfo:
-        return super().file_mkdir(path)
-
-    @logging_info
-    def file_delete(self, path: str) -> bool:
-        return super().file_delete(path)
-
-    @logging_info
-    def file_info(self, path: str) -> FileInfo:
-        return super().file_info(path)
-
-    @logging_info
-    def file_meta_info(self, path: str) -> RecordingMetaFile:
-        return super().file_meta_info(path)
-
-    @logging_info
-    def file_export_info(self, path: str) -> Dict[str, Optional[Path]]:
-        return super().file_export_info(path)
-
-    @logging_info
-    def file_export_functions(self) -> Tuple[ExternalExportFunction, ...]:
-        return super().file_export_functions()
-
-    @logging_info
-    def file_export_parameters(self, ftype: str) -> Tuple[ExternalParameter, ...]:
-        return super().file_export_parameters(ftype)
-
-    @logging_info
-    def file_export(self, ftype: str, path: str, **options: str) -> str:
-        return super().file_export(ftype, path, **options)
-
-    @logging_info
-    def file_segment(self, method: str, path: str) -> Union[None, bool, FileSegment]:
-        return super().file_segment(method, path)
-
-    @logging_info
-    def file_segment_get(self, segment: int, path: str):
-        return super().file_segment_get(segment, path)
-
-    @logging_info
-    def file_handle_open(self, content: str) -> Optional[FileHandle]:
-        info = self.file_manager.info(content)
-        meta = info.meta_file
-
-        if meta is None:
-            raise RuntimeError('not a meta file')
-
-        handle = self.cache_manager.file_open(meta)
-
-        return self.file_handle_info(handle)
-
-    @logging_info
-    def file_handle_info(self, handle: int) -> Optional[FileHandle]:
-        info = self.cache_manager.file_info(handle)
-
-        if info is None:
-            return None
-
-        # modify file path
-        info.shadow_path(self.file_manager.shadow_path(Path(info.filepath)))
-
-        return info
-
-    @logging_info
-    def file_handle_close(self, handle: int):
-        self.cache_manager.file_close(handle)
-
-    @logging_info
-    def user_all(self) -> List[str]:
-        raise super().user_all()
-
-    @logging_info
-    def user_info(self, user: str, *, user_session: Optional[str] = None) -> Optional[AbstractUserSetting]:
-        return super().user_info(user, user_session=user_session)
-
-    @logging_info
-    def user_login(self, user: str, content: str, *,
-                   user_session = None) -> ComplexResponse[AbstractUserSetting]:
-        raise super().user_login(user, content, user_session=user_session)
-
-    @logging_info
-    def user_logout(self, user_session: Optional[str] = None) -> None:
-        super().user_logout(user_session)
-
-    @logging_info
-    def user_add(self, user: str, content: str, *,
-                 user_session = None) -> ComplexResponse[AbstractUserSetting]:
-        return super().user_add(user, content, user_session=user_session)
-
-    @logging_info
-    def user_del(self, user: str, content: str) -> bool:
-        return super().user_del(user, content)
-
-    @logging_info
-    def user_sync(self, user_session: Optional[str]) -> bool:
-        return super().user_sync(user_session)
-
-    @logging_info
-    def user_configuration_list(self, user_session: Optional[str], **options: str) -> List[str]:
-        return super().user_configuration_list(user_session, **options)
-
-    @logging_info
-    def user_configuration_get(self, name: str, user_session: Optional[str] = None) -> Optional[RecordingMetaFile]:
-        return super().user_configuration_get(name, user_session)
-
-    @logging_info
-    def user_configuration_add(self, name: str, content: str, user_session: Optional[str] = None) -> bool:
-        return super().user_configuration_add(name, content, user_session)
-
-    @logging_info
-    def user_configuration_del(self, name: str, user_session: Optional[str] = None) -> bool:
-        return super().user_configuration_del(name, user_session)
-
-    @logging_info
-    def user_configuration_clone(self, name: str, content: str, user_session: Optional[str] = None) -> bool:
-        return super().user_configuration_clone(name, content, user_session)
-
-    @logging_info
-    def user_setup_list(self, user_session: Optional[str] = None) -> List[str]:
-        return super().user_setup_list(user_session)
-
-    @logging_info
-    def user_setup_info(self, name: str, user_session: Optional[str] = None) -> Optional[UserSetup]:
-        return super().user_setup_info(name, user_session)
-
-    @logging_info
-    def user_setup_new(self, name: str, user_session: Optional[str] = None) -> Optional[UserSetup]:
-        return super().user_setup_new(name, user_session)
-
-    @logging_info
-    def user_setup_del(self, name: str, user_session: Optional[str] = None) -> bool:
-        return super().user_setup_del(name, user_session)
-
-    @logging_info
-    def user_alias_list(self, user_session: Optional[str] = None) -> List[UserDeviceAlias]:
-        return super().user_alias_list(user_session)
-
-    @logging_info
-    def user_alias_info(self, name: str, user_session: Optional[str] = None) -> Optional[UserDeviceAlias]:
-        return super().user_alias_info(name, user_session)
-
-    @logging_info
-    def user_alias_edit(self, name: str, content: str, user_session: Optional[str] = None) -> Optional[UserDeviceAlias]:
-        return super().user_alias_edit(name, content, user_session)
-
-    # @logging_info
-    # def exp_pro_list(self) -> List[ExpProtocolInfo]:
-    #     return self.exp_manager.list_available_protocol()
-
-    @logging_info
-    def exp_pro_create(self, content: str, *,
-                       user_session = None) -> int:
-        user_name = self._session_user_name(user_session)
-
-        if user_name is None:
-            raise RuntimeError('require user login')
-
-        self.file_manager.user_setting.user_info(user_name)
-
-        # p = self.exp_manager.create_protocol(content, user_name)
-        return
-
-    # @logging_info
-    # def exp_pro_options(self, protocol: int) -> List[ExpOption]:
-    #     return self.exp_manager.protocol_options(protocol)
-
-    # @logging_info
-    # def exp_pro_option(self, protocol: int, option: str, content: Optional[str] = None) -> bool:
-    #     if content == '':
-    #         # option reset
-    #         if option == '':
-    #             # reset all options
-    #             self.exp_manager.protocol_reset(protocol)
-    #         else:
-    #             self.exp_manager.protocol_reset(protocol, *option.split(','))
-    #     else:
-    #         # option get/set
-    #         self.exp_manager.protocol_option(protocol, option, content)
-
-    #     return True
-
-    # @logging_info
-    # def exp_pro_status_all(self) -> List[AbstractExpProtocolState]:
-    #     ret = []
-
-    #     for p in self.exp_manager.list_protocol():
-    #         s = self.exp_manager.protocol_status(p)
-
-    #         if s is not None:
-    #             ret.append(s)
-    #         else:
-    #             ret.append(AbstractExpProtocolState(p))
-
-    #     return ret
-
-    # @logging_info
-    # def exp_pro_status(self, protocol: int) -> Optional[ExpProtocolState]:
-    #     return self.exp_manager.protocol_status(protocol)
-
-    # @logging_info
-    # def exp_pro_command(self, protocol: int, content: str) -> bool:
-    #     if content == 'ensure':
-    #         return self.exp_manager.ensure_protocol(protocol)
-
-    #     elif content == 'start':
-    #         self.exp_manager.submit_protocol(protocol)
-
-    #     elif content == 'interrupt':
-    #         self.exp_manager.interrupt_protocol(protocol)
-
-    #     elif content == 'suspend':
-    #         self.exp_manager.suspend_protocol(protocol)
-
-    #     elif content == 'resume':
-    #         self.exp_manager.resume_protocol(protocol)
-
-    #     else:
-    #         raise RuntimeError('unknown protocol command : ' + content)
-
-    #     return True
+    def run_project(self, project) -> bool:
+        project = self._project_manager.create(project)
+        self._project_manager.run(project)
+        return False
 
     @logging_info
     def device_internal_command(self, device: int, oper: str, value: Any) -> bool:
@@ -1393,8 +1033,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
             return True
 
         elif oper == InternalInstruction.PREDEFINED_DISABLE_CACHE:
-            if device is not None:
-                self._device_set_disable_cache(device, value)
             return True
 
         else:
@@ -1446,10 +1084,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
 
     def _device_set_sync(self, device: CompletedDevice, sync: bool):
         if sync:
-            self.log_verbose('start sync', device.device_id)
-
-            self.cache_manager.drop_data(device)
-
             client = self.data_server.client()
             if client is not None:
                 info = self.file_manager.use(device)
@@ -1460,22 +1094,14 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
                         filename = format_filename(self.TEMP_FILENAME_EXPR, device)
                         info = self.file_manager.save(device, filename)
                         client.update_device_configuration(device, info.meta_file, RawDataDecoder())
-                        print('***456')
 
                     if self._device_instruction_group is None:
                         client.start_sync(device)
-
-            if self._device_instruction_group is None:
-                # broadcast
-                self.broadcast_command(DataMessage.start(device.device_id))
-
+                    
+                    device.status = 1
         else:
-            self.log_verbose('stop sync', device.device_id)
-
             if self._device_instruction_group is None:
-
                 start_sync = False
-
                 client = self.data_server.client()
                 if client is not None:
                     with client:
@@ -1488,12 +1114,10 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
                 if start_sync:
                     # unset file info, but keep file path cache
                     self.file_manager.unset(device.device_id)
+                    device.status = 0
 
-                    # broadcast
-                    self.broadcast_command(DataMessage.stop(device.device_id))
 
     # server provide method implement : websocket broadcast functions
-
     @logging_info
     def broadcast_command(self, command: str, device: Optional[int] = None):
         self.log_verbose(pc('broadcast_command', GREEN),
@@ -1503,96 +1127,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         if self.mqtt_thread is not None:
             self.mqtt_thread.broadcast_command(command, device=device)
 
-    # data stream thread
-
-    def data_request_stream(self, start: bool, handler: DataMessageHandler):
-        if start:
-            t = self._start_data_stream_thread()
-            t.add_handle(handler)
-
-        else:
-            t = self._data_stream_thread
-
-            if t is not None:
-                t.del_handle(handler)
-
-                if not t.has_handle():
-                    self._stop_data_stream_thread()
-
-    def _start_data_stream_thread(self) -> DataStreamThread:
-        t = self._data_stream_thread
-
-        if self._data_stream_thread is None:
-            self._data_stream_thread = t = self.run_thread(DataStreamThread(self))
-
-        return t
-
-    def _stop_data_stream_thread(self):
-        t = self._data_stream_thread
-        self._data_stream_thread = None
-
-        if t is not None:
-            t.close()
-
-    # noinspection PyShadowingNames
-    @logging_info
-    def websocket_command(self, command: str) -> Union[None, str, bytes, List[str]]:
-        if command == DataMessage.GREETING:
-            return DataMessage.greeting()
-
-        elif command == DataMessage.SYNC:
-            return self._websocket_command_sync(map(lambda d: d.device_id, self._post_device_list()))
-
-        elif command.startswith(DataMessage.SYNC):
-            _, device_list = part_suffix(command, ':')
-
-            if ',' in device_list:
-                return self._websocket_command_sync(map(int, device_list.split(',')))
-
-            else:
-                return self._websocket_command_sync([int(device_list)])
-
-        elif command.startswith(DataMessage.BROADCAST):
-            _, message = part_suffix(command, ':')
-
-            if message is not None:
-                self.broadcast_command(DataMessage.broadcast(message))
-
-        return None
-
-    # noinspection PyShadowingNames
-    def _websocket_command_sync(self, device_list: Iterable[int]) -> Union[str, List[str]]:
-        client = self.data_server.client()
-
-        if client is None:
-            return DataMessage.sync(False)
-
-        else:
-            result_start = []
-            result_stop = []
-
-            with client:
-                for device in device_list:
-                    if client.is_sync(device):
-                        result_start.append(device)
-                    else:
-                        result_stop.append(device)
-
-            return [DataMessage.start(result_start), DataMessage.stop(result_stop)]
-
-    # noinspection PyShadowingNames
-    def websocket_data_request(self, handler: DataMessageHandler, command: Optional[str]):
-        try:
-            self._handle_command_response(handler, command)
-
-        except (ValueError, IndexError) as e:
-            self.log_warn(e)
-            handler.on_error(DataMessage.warn(str(e)))
-
-        except BaseException as e:
-            self.log_warn(e)
-            handler.on_error(DataMessage.error(str(e)))
-
     # noinspection PyShadowingNames
     def _handle_command_response(self, handler: DataMessageHandler, command: Optional[str]):
         """
@@ -1614,29 +1148,7 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         else:
             self.cache_manager.get_data_message(handler, response)
 
-    # server provide method implement : cache API
-
-    @logging_verbose
-    def clear(self):
-        self.cache_manager.clear()
-
-    def push_data(self, data: Union[bytes, List[bytes]]):
-        self.cache_manager.push_data(data)
-
-    @logging_verbose
-    def drop_data(self, *device: int):
-        self.cache_manager.drop_data(*device)
-
-    def stop_data(self, device: int):
-        self.cache_manager.stop_data(device)
-
-    # noinspection PyShadowingNames
-    @logging_verbose
-    def notify_data(self, device: int, message: str):
-        self.broadcast_command(message, device=device)
-
     # led function
-
     def get_led_state(self) -> str:
         return self.led_thread.state
 
@@ -1644,7 +1156,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         self.led_thread.set_state(state)
 
     # hardware send test
-
     if not _RUNTIME_COMPILE:
 
         def _hardware_send_test(self, options: Dict[str, str]):
@@ -1687,30 +1198,9 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
                     'export_root':  str(self.file_manager.export_root)
                 }
 
-            if section is None or 'cache' in section:
-                ret['cache'] = {
-                    'cache_size': self.cache_manager.cache_size,
-                    'cache_time': self.cache_manager.cache_time,
-                }
-
-            # if section is None or 'websocket' in section:
-            #     ret['websocket'] = {
-            #         'address': self.websocket_thread.websocket_address,
-            #         'port':    self.websocket_thread.websocket_port,
-            #     }
-
             if section is None or 'mqtt' in section:
                 ret['mqtt'] = None if self.mqtt_thread is None else self.mqtt_thread.hardware_test()
 
-            if section is None or 'trash' in section:
-                trash_manager = self._routine_trash_thread
-
-                ret['trash'] = None if trash_manager is None else {
-                    'routine_interval': trash_manager.routine_interval,
-                    'trash_expire':     trash_manager.trash_expire,
-                    'remove_expire':    trash_manager.remove_expire,
-                }
-
             if section is None or 'led' in section:
                 ret['led'] = {
                     'state_all': list(LED.COLOR.keys()),
@@ -1839,7 +1329,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
             # TODO write options files
             return False
 
-
 class _RandomCrashThread(ServerThread):
     def __init__(self):
         super().__init__('Crash')

python/biopro/server/recording.py

@@ -41,7 +41,7 @@ class RecordingProcess(Process):
         connect to DB and send sql command
     """
 
-    def __init__(self, client_id: str, log_verbose, device_id, queue_rec, queue_ds, meta_path, 
+    def __init__(self, client_id: str, log_verbose, device_id, queue_rec, queue_ds, queue_msg, meta_path, 
                     device_info, parameter, parent, recording_file_name, data_format,
                     mqtt_ip, mqtt_port,
                     name = 'Recording-Process', database = None):
@@ -82,6 +82,7 @@ class RecordingProcess(Process):
 
         self._queue_rec = queue_rec
         self._queue_ds = queue_ds
+        self._queue_msg = queue_msg
         self.queue_flag = True
 
         self._is_close = True
@@ -98,6 +99,11 @@ class RecordingProcess(Process):
         self._last_cnt = [-1, -1, -1, -1, -1, -1, -1, -1]
         self._wrong_cnt = 0
 
+        # elite data length
+        self._elite_data_len = 40
+        self._mem_header_len = 3
+        self._mem_tailer_len = 6
+        self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
 
     def ensure_data_format(self) -> DataDecodeFormat:
         if isinstance(self._data_format, (str, bytes)):
@@ -160,7 +166,11 @@ class RecordingProcess(Process):
         """
         q = None
         try:
+            # now = time()
             q = self._queue_rec.get()
+            # get_queue_time_cost = time() - now
+            # if get_queue_time_cost > 2:
+            #     print('get queue cost time', get_queue_time_cost)
         except:
             return False
         finally:
@@ -186,7 +196,7 @@ class RecordingProcess(Process):
         current_time = time()
         if self._timer is not None:
             if current_time - self._timer > 1.5:
-                print('time, sync_data routine_time', current_time, current_time - self._timer)
+                print('time, sync_data routine_time', 'device:', self._device, datetime.now(), current_time, current_time - self._timer)
                 self._isTimeOut = True
         self._timer = current_time
 
@@ -221,11 +231,12 @@ class RecordingProcess(Process):
                 try:
                     if isinstance(decoder, I4V4Z4T4DataDecoder) or isinstance(decoder, EISZeroOneDataDecoder):
                         if decoder.isFinishMode is not None and decoder.isFinishMode() == 1:
-                            content = {}
-                            content['header'] = 'device_instruction/0'
-                            content['device'] = result.device
-                            content['instruction'] = 'interrupt'
-                            self._mqtt_thread.publish('device_instruction',json_stringify(content), True)
+                            self._queue_msg.put(['ds', self._device, 'interrupt'])
+                            # content = {}
+                            # content['header'] = 'device_instruction/0'
+                            # content['device'] = result.device
+                            # content['instruction'] = 'interrupt'
+                            # self._mqtt_thread.publish('device_instruction',json_stringify(content), True)
                             # self.server.stop_sync(self.device)
                 except RuntimeError as e:
                     print(e)
@@ -286,6 +297,7 @@ class RecordingProcess(Process):
                     self._last_cnt[7] = head_counter - 1
                 last_data_cnt = self._last_cnt[7]
 
+            # dont save to section when head or id is wrong
             if (head != 255 or device_id != device):
                 save = False
                 last_data_cnt = last_data_cnt + 1
@@ -328,61 +340,57 @@ class RecordingProcess(Process):
 
         return save
 
-    def _check_jump_ram(self, raw_data: bytes, colum_now: int, colum_total: int, save: bool, device: int):
-        i = colum_now
+    def _check_jump_ram(self, raw_data: bytes, colum_now: int, colum_total: int, save: bool, device: int, data_len: int):
+        col = colum_now
+        save = False
 
-        if (raw_data[i][0] == 255 and raw_data[i][3] == device):
-            if colum_total < 3: 
-                print('this ram data < 3 records, need to fix, colum_total = ', colum_total)
-                if colum_total == 1:
-                    print('raw_data[0]', raw_data[0])
+        if raw_data[col][0] != 255 or raw_data[col][3] != device:
+            return save
 
-                elif colum_total == 2:
-                    print('raw_data[0]', raw_data[0])
-                    print('raw_data[1]', raw_data[1])
+        if colum_total == 1:
+            print('this ram data < 3 records, colum_total = ', colum_total)
+            print('raw_data[0]', raw_data[0])
+            return save
 
-            else:
+        elif colum_total == 2:
+            print('this ram data < 3 records, colum_total = ', colum_total)
+            print('raw_data[0]', raw_data[0])
+            print('raw_data[1]', raw_data[1])
+            if (raw_data[col + 1][1] - raw_data[col][1] == 1) or (raw_data[col][1] == 255 and raw_data[col + 1][1] == 0):
+                save = True
 
-                if((raw_data[i + 1][1] - raw_data[i][1] == 1 and raw_data[i + 2][1] - raw_data[i + 1][1] == 1) or
-                    (raw_data[i][1] == 255 and raw_data[i + 1][1] == 0 and raw_data[i + 2][1] == 1) or
-                    (raw_data[i][1] == 254 and raw_data[i + 1][1] == 255 and raw_data[i + 2][1] == 0)):
+        elif colum_total >= 3:
+            if (raw_data[col + 1][1] - raw_data[col][1] == 1 and raw_data[col + 2][1] - raw_data[col + 1][1] == 1) or\
+                (raw_data[col][1] == 255 and raw_data[col + 1][1] == 0 and raw_data[col + 2][1] == 1) or\
+                (raw_data[col][1] == 254 and raw_data[col + 1][1] == 255 and raw_data[col + 2][1] == 0):
+                save = True
 
-                    if ((raw_data[i][1] == 255 and raw_data[i + 1][1] == 0 and raw_data[i + 2][1] == 1) or
-                        (raw_data[i][1] == 254 and raw_data[i + 1][1] == 255 and raw_data[i + 2][1] == 0)):
-                        print('cnt = [254, 255, 0] or [255, 0, 1]')
+        if save == True:
+            self._skip_ram_cnt += 1
+            last_data_cnt = raw_data[col][1]
+            if (device == 4):
+                print('self._last_cnt[4]:', self._last_cnt[4], ', last_data_cnt:', last_data_cnt)
+            if (device == 5):
+                print('self._last_cnt[5]:', self._last_cnt[5], ', last_data_cnt:', last_data_cnt)
+            if (device == 6):
+                print('self._last_cnt[6]:', self._last_cnt[6], ', last_data_cnt:', last_data_cnt)
+            if (device == 7):
+                print('self._last_cnt[7]:', self._last_cnt[7], ', last_data_cnt:', last_data_cnt)
+                
+            print('skip RAM, but data is right, solve data', list(raw_data[col][0:3]),'|', list(raw_data[colum_total-1][0:3]), 'skip Ram', self._skip_ram_cnt, 'times \n')
 
-                    save = True
-                    self._skip_ram_cnt += 1
-                    last_data_cnt = raw_data[i][1]
-                    if (device == 4):
-                        print('self._last_cnt[4]:', self._last_cnt[4], ', last_data_cnt:', last_data_cnt)
-                    if (device == 5):
-                        print('self._last_cnt[5]:', self._last_cnt[5], ', last_data_cnt:', last_data_cnt)
-                    if (device == 6):
-                        print('self._last_cnt[6]:', self._last_cnt[6], ', last_data_cnt:', last_data_cnt)
-                    if (device == 7):
-                        print('self._last_cnt[7]:', self._last_cnt[7], ', last_data_cnt:', last_data_cnt)
-                        
-                    print('skip RAM, but data is right, solve data', list(raw_data[i][0:3]), 'skip Ram', self._skip_ram_cnt, 'times')
-                    # print('data:')
-                    # print('|', list(raw_data[0]))
-                    # print('|', list(raw_data[1]))
-                    # print('| ... ... ...')
-                    # print('| ... ... ...')
-                    # print('|', list(raw_data[colum_total-1]))
-                    print()
+            if (device == 4):
+                self._last_cnt[4] = last_data_cnt
 
-                    if (device == 4):
-                        self._last_cnt[4] = last_data_cnt
+            elif (device == 5):
+                self._last_cnt[5] = last_data_cnt
 
-                    elif (device == 5):
-                        self._last_cnt[5] = last_data_cnt
+            elif (device == 6):
+                self._last_cnt[6] = last_data_cnt
 
-                    elif (device == 6):
-                        self._last_cnt[6] = last_data_cnt
+            elif (device == 7):
+                self._last_cnt[7] = last_data_cnt
 
-                    elif (device == 7):
-                        self._last_cnt[7] = last_data_cnt
         return save
 
     def _neu_foreach_data_section(self, data: bytes):
@@ -497,50 +505,59 @@ class RecordingProcess(Process):
         :return:
         """
         raw_data = []
-        index = 0
-        elite_data_len = 40
-        mem_header_len = 3
-        mem_tailer_len = 8
-        single_data_len = elite_data_len + mem_header_len + mem_tailer_len
-        device = self._device
+        records = 0
         print_flag = False
+        device = self._device
+        single_data_len = self._single_data_len
+        mem_header_len = self._mem_header_len
 
         # packet section data use two microarray 
         for i in range(0, len(data), single_data_len):
-            index = index + 1
-            for j in range(index, index + 1):
-                raw_data.append(data[i : i + single_data_len])
-                
+            records = records + 1
+            raw_data.append(data[i : i + single_data_len])
+            if len(data[i : i + 10]) < 10:
+                print('data dont be package:', raw_data[records - 1], 'index:', records - 1)
+                del raw_data[records - 1]
+                records = records - 1
+
         # check cnt
-        for i in range(index):  
+        for i in range(records):
 
             # if jump cnt, don't save data      
             save = self._check_cnt(raw_data[i], device)
 
             # # if jump Ram, also can handle data
             if save == False:
-                save = self._check_jump_ram(raw_data, i, index, save, device)
+                save = self._check_jump_ram(raw_data, i, records, save, device, single_data_len)
                             
             if (save == True):
                 section = raw_data[i]
 
-                if (section[0 : mem_header_len] == section[single_data_len - 3: single_data_len]):
-                    section = section + b'\x00'
-                
-                else:
+                check_sum = sum(section[0 : single_data_len - 1]) & 0b11111111
+
+                if (check_sum != section[single_data_len - 1]):
+                    print('check number not match,',
+                        list(section[0 : mem_header_len]), section[-1], '!=', check_sum, 'device:', device, ',', datetime.now())
+                    if (i-1 >= 0):
+                        print('check number not match', list(raw_data[i-1]), 'raw:', i-1)
+
+                    print('check number not match', list(raw_data[i]), 'raw:', i)
+                    
+                    if (i+1 <= records):
+                        print('check number not match', list(raw_data[i+1]), 'raw:', i+1, '\n')
                     section = section + b'\x01'
-                    print('header != tailer,', 
-                        list(section[0 : mem_header_len]), 
-                        list(section[single_data_len - 3: single_data_len]),
-                        'device:', device, ',', datetime.now())
-                    print('header != tailer', list(section), '\n')
-                
-                section = section[3:]
+
+                    print('delete data:', list(raw_data[i][0:3]), 'raw:', i, '\n')
+                    continue
+                else:
+                    section = section + b'\x00'
+
+                # section = section[3:]
                 yield None, section
 
             else:
                 print_flag = True
-                print('delete data:', list(raw_data[i]))
+                print('delete data:', list(raw_data[i][0:3]), 'raw:', i, '\n')
 
         # if print_flag:
         #     print('delete data context:')

python/biopro/util/logger.py

@@ -3,6 +3,7 @@ import inspect
 import os
 import sys
 import threading as _threading
+from time import time
 from datetime import datetime
 from functools import wraps
 from typing import Any, Optional, Tuple, Union
@@ -520,3 +521,17 @@ def logging_error(f):
         return f(self, *args, **kwargs)
 
     return _logger
+
+    
+def calculate_time(time_limit=None):
+    def actual_calculate_time(func):
+        def warp(*args, **kwargs):
+            now = time()
+            func(*args, **kwargs)
+            if time_limit == None:
+                print(func.__name__,'cost:', time() - now)
+            else:
+                if time() - now > time_limit:
+                    print(func.__name__,'cost:', time() - now)
+        return warp
+    return actual_calculate_time

python/res/devlib/json/elite_zm_15.devlib.json

@@ -1219,9 +1219,18 @@
     ],
     "pul_sen_start": {
       "type": "RIS",
+      "parameter": {
+        "pa": "ADC_LEVEL_I_15",
+        "pb": "ADC_LEVEL_V_IN_15",
+        "pc": "DAC_LEVEL_V_OUT_15",
+        "pd": "CTRL_HIGH_Z_15",
+        "pe": "SAMPLE_RATE"
+      },
       "data": [
         "1X0D;",
-        "1XFF"
+        "1XFF",
+        "4b>pa;4b>pb;",
+        "4b>pc;4b>pd"
       ]
     },
     "pul_sen_segment_0": {
@@ -1365,9 +1374,18 @@
     },
     "dpv_auto_mode_ins_final": {
       "type": "RIS",
+      "parameter": {
+        "pa": "ADC_LEVEL_I_15",
+        "pb": "ADC_LEVEL_V_IN_15",
+        "pc": "DAC_LEVEL_V_OUT_15",
+        "pd": "CTRL_HIGH_Z_15",
+        "pe": "SAMPLE_RATE"
+      },
       "data": [
         "1X0E;",
-        "1XFF"
+        "1XFF;",
+        "4b>pa;4b>pb;",
+        "4b>pc;4b>pd"
       ]
     },
 
@@ -1437,9 +1455,18 @@
     },
     "dpv_advanced_mode_ins_final": {
       "type": "RIS",
+      "parameter": {
+        "pa": "ADC_LEVEL_I_15",
+        "pb": "ADC_LEVEL_V_IN_15",
+        "pc": "DAC_LEVEL_V_OUT_15",
+        "pd": "CTRL_HIGH_Z_15",
+        "pe": "SAMPLE_RATE"
+      },
       "data": [
         "1X10;",
-        "1XFF"
+        "1XFF;",
+        "4b>pa;4b>pb;",
+        "4b>pc;4b>pd"
       ]
     },
     "dpv_engineering_mode": [