-fix DetachedInstanceError

- init project then create folder

.gitignore

@@ -1,7 +1,10 @@
 .DS_Store
 *.cpython-37.opt-2.pyc
+*.cpython-39-arm-linux-gnueabihf.so
+*.
 *.pyc
 */__pycache__
 /.vscode
 /media
 python/biopro/sever/_identify.py
+*.log

README.md

@@ -4,7 +4,7 @@ New goal on pi4 without kotlin and django, and with only one dataserver.
 # Installation
 ### Get Raspbrain into SD card
 
-###### Download Raspbian Buster Lite
+###### Download Raspbian Bullseye Lite
 
 >https://www.raspberrypi.org/downloads/raspberry-pi-os/
 
@@ -14,7 +14,7 @@ New goal on pi4 without kotlin and django, and with only one dataserver.
 lsblk
 
 # copy data to sd card
-sudo dd bs=4M if=yyyy-mm-dd-raspbian-buster.img of=/dev/sdX conv=fsync status=progress
+sudo dd bs=4M if=yyyy-mm-dd-raspios-bullseye-armhf-lite.img of=/dev/sdX conv=fsync status=progress
 
 # enable ssh on first boot
 add ssh.txt in boot folder
@@ -77,19 +77,26 @@ add ssh.txt in boot folder
 
 
 ###### Install dependencies
-    sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql
+    sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql npm
+    sudo apt-get install libatlas-base-dev
+    sudo apt-get install python3-numpy
+
+###### wiringpi conflict
+need to install wiringpi:  https://github.com/WiringPi/WiringPi
+install instructions:  https://github.com/WiringPi/WiringPi/blob/master/INSTALL
 
 ### Setup project
-###### Clone project
+###### Clone data server project
 ```
 cd ~
-git clone https://gitlab.com/bioproscientific/bioprorelife.git
+git clone https://gitlab.com/wisetop/controller/wisetopdataserver.git
 ```
 
 ###### Install python dependencies
 ```
-cd ~/bioprorelife
+ cd ~/wisetopdataserver
 pip3 install -r requirements.txt
+pip3 install SQLAlchemy
 ```
 ##### Packages version
 ```
@@ -112,14 +119,14 @@ psycopg2                      2.8.5
 
 ###### Build C extension
 ```
-cd ~/bioprorelife/python/biopro/ext/
+cd ~/wisetopdataserver/python/biopro/ext/
 rm -rf *.so build
 python3 setup.py build_ext --inplace
 ```
 
 ###### Check setup-uart file
 ```
-cd ~/bioprorelife
+cd ~/wisetopdataserver/
 sudo vim ./run-setup-uart.sh
 ```
 ##### Modify the code as following
@@ -149,44 +156,72 @@ sudo raspi-config
 reboot
 ```
 
+###### Set pi password
+```
+cd ~
+passwd
+Current password:raspberry
+New password:5k6zj454778225
+Retype new password:5k6zj454778225
+```
+
 ###### Auto run program when device start
 ```
 sudo vim /etc/rc.local
 ```
-add the code following as:
+###### add the code following as:
 ```
-sudo -H -u pi nohup /home/pi/bioprorelife/run-data-server.sh > /home/pi/.data_server.out &
+sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.data_server.out &
+#sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.wisetop_data_$now.out &
 ```
+##### /etc/rc.local
+```
+_IP=$(hostname -I) || true
+if [ "$_IP" ]; then
+  printf "My IP address is %s\n" "$_IP"
+fi
 
+now=$(date +'%F_%T')
+
+sudo nohup systemctl restart apache2
+sudo nohup systemctl restart mosquitto
+
+nohup node /home/pi/wisetopapiserver/dist/app.js > /home/pi/.api_server.out &
+
+sleep 5
+
+sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.data_server.out &
+#sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.wisetop_data_$now.out &
+
+exit 0
+```
 ### MQTT broker install
 
-1. Install mosquitto
-```
+###### 1.Install mosquitto
 sudo apt-get install mosquitto mosquitto-clients
-```
 
-2. Enable Remote Access
-```
+
+###### 2.Enable Remote Access
 sudo vim /etc/mosquitto/conf.d/default.conf
-```
+
 add the code following as:
 ```
 listener 1883
 protocol mqtt
 listener 8083
 protocol websockets
+allow_anonymous true
 ```
-restart mqtt broker
-```
+###### 3.restart mqtt broker
 sudo systemctl restart mosquitto
-```
 
-3. Robust MQTT
+###### 4.Robust MQTT
 create mosquitto_restart.sh
-```
+
 cd ~
 sudo vim mosquitto_restart.sh
-```
+
+
 add the code following as:
 ```
 if [ "`ps -aux | grep /usr/sbin/mosquitto | wc -l`" == "1" ]
@@ -200,25 +235,155 @@ fi
 echo "$SERVICE is currently running" >> /home/ubuntu/cron.log
 exit 0
 ```
-add mosquitto_restart.sh to root routing
-```
+###### 5.add mosquitto_restart.sh to root routing
 sudo chmod +x mosquitto_restart.sh
 sudo  -i
 crontab -e
-```
+
 add the code following as:
 ```
 */5 * * * * /home/pi/mosquitto_restart.sh
 ```
-3. Auto run MQTT broker when when pi-start
-```
+###### 6.Auto run MQTT broker when when pi-start
 sudo vim /etc/rc.local
-```
+
 add the code following as:
 ```
 sudo nohup systemctl restart mosquitto
 ```
 
-### Setup routed wireless access point
+### Setting up a Routed Wireless Access Point
+###### 1.Install AP and Management Software
+sudo apt install hostapd
+sudo systemctl unmask hostapd
+sudo systemctl enable hostapd
+sudo apt install dnsmasq
+sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
+
+###### 2.Set up the Network Router
+sudo nano /etc/dhcpcd.conf
+```
+interface wlan0
+    static ip_address=192.168.2.1/24
+    nohook wpa_supplicant
+```
+sudo nano /etc/sysctl.d/routed-ap.conf
+```
+# Enable IPv4 routing
+net.ipv4.ip_forward=1
+```
+
+sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
+sudo netfilter-persistent save
+sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
+
+
+sudo nano /etc/dnsmasq.conf
+
+```
+interface=wlan0 # Listening interface
+dhcp-range=192.168.2.2,192.168.2.255,255.255.255.0,24h
+                # Pool of IP addresses served via DHCP
+domain=wlan     # Local wireless DNS domain
+address=/gw.wlan/192.168.2.1
+                # Alias for this router
+```
+###### 3.Ensure Wireless Operation
+sudo rfkill unblock wlan
+
+###### 4.Configure the AP Software
+sudo nano /etc/hostapd/hostapd.conf
+
+```
+country_code=TW
+interface=wlan0
+ssid=WTP_NONE
+hw_mode=g
+channel=7
+macaddr_acl=0
+auth_algs=1
+ignore_broadcast_ssid=0
+wpa=2
+wpa_passphrase=00000000
+wpa_key_mgmt=WPA-PSK
+wpa_pairwise=TKIP
+rsn_pairwise=CCMP
+
+# 802.11n support
+ieee80211n=1
+# make raspberry pi dongle fast
+wme_enabled=1
+# ht_capab: HT capabilities, enable 40MHz
+ht_capab=[HT40+][SHORT-GI-40]
+```
+###### 5.Running the new Wireless AP
+sudo systemctl reboot
+
+### Install Apache2
+sudo apt install apache2
+
+### Deploy web site
+sudo vim /etc/apache2/sites-available/000-default.conf
+```
+<VirtualHost *:8080> #80------>8080
+        # The ServerName directive sets the request scheme, hostname and port that
+        # the server uses to identify itself. This is used when creating
+        # redirection URLs. In the context of virtual hosts, the ServerName
+        # specifies what hostname must appear in the request's Host: header to
+        # match this virtual host. For the default virtual host (this file) this
+        # value is not decisive as it is used as a last resort host regardless.
+        # However, you must set it for any further virtual host explicitly.
+        #ServerName www.example.com
+
+        ServerAdmin webmaster@localhost
+        DocumentRoot /var/www/html
+
+        # Available loglevels: trace8, ..., trace1, debug, info, notice, warn,
+        # error, crit, alert, emerg.
+        # It is also possible to configure the loglevel for particular
+        # modules, e.g.
+        #LogLevel info ssl:warn
+
+        ErrorLog ${APACHE_LOG_DIR}/error.log
+        CustomLog ${APACHE_LOG_DIR}/access.log combined
+
+        # For most configuration files from conf-available/, which are
+        # enabled or disabled at a global level, it is possible to
+        # include a line for only one particular virtual host. For example the
+        # following line enables the CGI configuration for this host only
+        # after it has been globally disabled with "a2disconf".
+        #Include conf-available/serve-cgi-bin.conf
+</VirtualHost>
+
+<VirtualHost *:80>
+    ServerAdmin bioprovue@localhost
+    DocumentRoot /var/www/bioprovuebuild
+</VirtualHost>
+```
+
 ##### raspberry website document:
 > https://www.raspberrypi.org/documentation/configuration/wireless/access-point-routed.md
+
+# ChangeLog
+[2022.12.28]
+change meta_project_info to project_metas
+change project_report to project_reports
+alter table project_meta column cycle type string to jsonb
+
+[2022.11.16]
+add python package SQLAlchemy
+add new column project(int4) in postgresSQL table recording_meta_datas
+add new postgresSQL table project_report
+add new postgresSQL table meta_project_info
+
+[2022.10.18]
+socektTimeout from 1s -> 5s
+socketListen from 3 -> 20
+
+[2022.09.30]
+add new column cycle(jsonb) in postgresSQL table projects
+
+[2022.9.28]
+add python package numpy
+
+

python/biopro/controller.py

@@ -1578,10 +1578,22 @@ class ControlAPI(metaclass=Router):
         raise NotImplementedError()
     
     def run_project(self, project) -> bool:
-        print('create_project', project)
-        self._project_manager.create(project)
-        return False
+        raise NotImplementedError()
 
+    def get_running_project(self) -> bool:
+        raise NotImplementedError()
+    
+    def stop_project(self, project) -> bool:
+        raise NotImplementedError()
+    
+    def set_project(self, project, content) -> bool:
+        raise NotImplementedError()
+    
+    def set_project_cycle(self, project, index, content) -> bool:
+        raise NotImplementedError()
+    
+    def show_device_data(self, device) -> bool:
+        raise NotImplementedError()
 
 # noinspection PyAbstractClass
 class ControlClient(SocketClient, ControlAPI, metaclass=SocketClientMacro(ControlAPI)):

python/biopro/data.py

@@ -87,7 +87,8 @@ class DataAPI(metaclass=abc.ABCMeta):
     def update_device_configuration(self,
                                     device: Union[int, Device],
                                     meta_file: Union[str, Path, RecordingMetaFile],
-                                    data_format: Union[AnyStr, DataDecodeFormat]):
+                                    data_format: Union[AnyStr, DataDecodeFormat],
+                                    project_info: str):
         """set device configuration.
 
         :param device: device ID
@@ -130,6 +131,14 @@ class DataAPI(metaclass=abc.ABCMeta):
     def hardware_test(self) -> JSON_OBJECT:
         """"""
         pass
+    
+    @abc.abstractmethod
+    def show_data(self, device: Union[int, Device]):
+        """show device data
+
+        :param device: device ID
+        """
+        pass
 
 
 # noinspection PyAbstractClass
@@ -146,7 +155,8 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
     def update_device_configuration(self,
                                     device: Union[int, Device],
                                     meta_file: Union[str, Path, RecordingMetaFile],
-                                    data_format: Union[AnyStr, DataDecodeFormat]):
+                                    data_format: Union[AnyStr, DataDecodeFormat],
+                                    project_info: str):
 
         # meta file
         if isinstance(meta_file, str):
@@ -178,7 +188,7 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
             raise TypeError('not a data decode format : ' + data_format.__class__.__name__)
 
         # send
-        self.send_command('update_device_configuration', device, meta_file, data_format)
+        self.send_command('update_device_configuration', device, meta_file, data_format, project_info)
 
     def is_sync(self, device: Union[None, int, Device] = None) -> bool:
         if isinstance(device, Device):
@@ -191,6 +201,9 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
 
     def stop_sync(self, *device: Union[int, Device]):
         self.send_command('stop_sync', *self._to_device_id(*device))
+    
+    def show_data(self, device: int):
+        self.send_command('show_data', device)
 
     @staticmethod
     def _to_device_id(*device: Union[int, Device]) -> Tuple[int, ...]:

python/biopro/db/base.py

@@ -0,0 +1,10 @@
+from sqlalchemy import create_engine
+# from sqlalchemy.ext.declarative import declarative_base
+from sqlalchemy.orm import sessionmaker, declarative_base
+
+SQLALCHEMY_DATABASE_URL = "postgresql://biopro:BioProControlBox@127.0.0.1:5432/postgres"
+
+engine = create_engine(SQLALCHEMY_DATABASE_URL)
+Session = sessionmaker(bind=engine)
+
+Base = declarative_base()

python/biopro/db/collection.py

@@ -0,0 +1,75 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+from biopro.db.base import Session
+
+from .base import Base
+
+class Collection(Base):
+    __tablename__ = "collections"
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String(255))
+    parent = Column(JSONB)
+    controller_id = Column(Integer)
+    type = Column(String(255))
+    description = Column(String(255))
+    deleted = Column(Boolean)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    @classmethod
+    def create_collection(cls, collection_name, parent, duplicate=False):
+        with Session() as session:
+            name = cls.check_name_duplicate(collection_name, parent, 0, duplicate=duplicate)
+            if name == None:
+                return session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
+            else:
+                collection = Collection(
+                    name = name,
+                    parent = parent,
+                    type= "folder",
+                )
+                session.add(collection)
+                session.commit()
+                session.refresh(collection)
+                return collection
+
+    @classmethod
+    def check_name_duplicate(cls, collection_name, parent, n, _session = None, duplicate=False):
+        if _session == None:
+            with Session() as session:
+                result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
+                if result is None:
+                    return cls.generate_name(collection_name, n)
+                else:
+                    if duplicate == True:
+                        return None
+                    else:
+                        new_num = n + 1
+                        # new_name =  f"{collection_name}({new_num})" 
+                        return cls.check_name_duplicate(collection_name, parent, new_num, session)
+        else:
+            result = _session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
+            if result is None:
+                return cls.generate_name(collection_name, n)
+            else:
+                new_num = n + 1
+                # new_name =  f"{collection_name}({new_num})" 
+                return cls.check_name_duplicate(collection_name, parent, new_num, _session)
+
+    @classmethod
+    def generate_name(cls, collection_name, n):
+        if n==0:
+            return collection_name
+        else:
+            return f"{collection_name}({n})" 
+    
+    @classmethod
+    def find_collection(cls, collection_name, parent):
+        with Session() as session:
+            result = session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
+            return result
+    
+        

python/biopro/db/meta.py

@@ -0,0 +1,24 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+
+from .base import Base, Session
+
+class RecordingDataMeta(Base):
+    __tablename__ = "recording_data_metas"
+
+    id = Column(Integer, primary_key=True)
+    path = Column(String(255))
+    name = Column(String(255))
+    parent = Column(JSONB)
+    size = Column(String(255))
+    time_duration = (String(255))
+    raw_data = Column(JSONB)
+    project = Column(Integer)
+    deleted = Column(Boolean, default = False)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    # def __repr__(self):
+    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project.py

@@ -0,0 +1,24 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+
+from .base import Base
+
+class Project(Base):
+    __tablename__ = "project"
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String)
+    desc = Column(String)
+    task = Column(JSONB)
+    cycle = Column(JSONB)
+    device = Column(JSONB)
+    uuid = Column(String(36))
+    user_auth = Column(JSONB)
+    deleted = Column(Boolean, default = False)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    # def __repr__(self):
+    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project_meta.py

@@ -0,0 +1,29 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+
+from .base import Base, Session
+
+class MetaProjectInfo(Base):
+    __tablename__ = "project_metas"
+
+    id = Column(Integer, primary_key=True)
+    project = Column(String(36))
+    cycle = Column(JSONB)
+    task = Column(JSONB)
+    serial_number = Column(Integer)
+    deleted = Column(Boolean, default = False)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    @classmethod
+    def create_project_meta(cls, project):
+        with Session() as session:
+            project_meta = MetaProjectInfo(project = project['project'], cycle= project['cycle'], task=project['task'], serial_number=int(project['serial_number']))
+            session.add(project_meta)
+            session.commit()
+            return project_meta.id
+
+    # def __repr__(self):
+    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project_report.py

@@ -0,0 +1,24 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+
+from .base import Base
+
+class ProjectReport(Base):
+    __tablename__ = "project_reports"
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String)
+    desc = Column(String)
+    task = Column(JSONB)
+    cycle = Column(JSONB)
+    device = Column(JSONB)
+    uuid = Column(String(36))
+    user_auth = Column(JSONB)
+    deleted = Column(Boolean, default = False)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    # def __repr__(self):
+    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/recording_data.py

@@ -0,0 +1,88 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric, Text
+from sqlalchemy.dialects.postgresql import JSONB
+from biopro.db.base import Session
+
+from .base import Base
+
+# build a model class with a specific table name
+def get_raw_model(channel):
+    tablename = str(channel) + '_recording_data_raws'  # dynamic table name
+    class_name = 'RECORDING_DATA_RAWS' # dynamic class name
+    print('get_raw_model', tablename)
+
+    for mapper in Base.registry.mappers:
+        cls = mapper.class_
+        classname = cls.__name__
+        tblname = cls.__tablename__
+        print(cls, classname, tblname)
+        if (classname == class_name):
+            if tblname == tablename:
+                return cls
+
+    Model = type(class_name, (RECORDING_DATA_RAWS,), {
+        '__tablename__': tablename
+    })
+    return Model
+
+
+class RECORDING_DATA_RAWS(Base):
+    __abstract__ = True
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String(255))
+    parent = Column(Integer)
+    size = Column(String(255))
+    path = Column(JSONB)
+    uuid = Column(String(255))
+    serial_number = Column(String(255))
+    data_format = Column(String(255))
+    channel = Column(Integer)
+    start_time = Column(String(255))
+    end_time = Column(String(255))
+    data = Column(Text)
+    compressed = Column(Boolean)
+    deleted = Column(Boolean)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    # @classmethod
+    # def create_subject_data(cls, subject_id, project, meta, data):
+    #     with Session() as session:
+    #         subject = Subject(
+    #             subject_id = subject_id,
+    #             project = project,
+    #             meta= meta,
+    #             data = data
+    #         )
+    #         session.add(subject)
+    #         session.commit()
+    #         return subject
+        
+    # @classmethod
+    # def check_name_duplicate(cls, collection_name, parent, n):
+    #     with Session() as session:
+    #         result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
+    #         if result is None:
+    #             return cls.generate_name(collection_name, n)
+    #         else:
+    #             new_num = n + 1
+    #             # new_name =  f"{collection_name}({new_num})" 
+    #             return cls.check_name_duplicate(collection_name, parent, new_num)
+
+    # @classmethod
+    # def generate_name(cls, collection_name, n):
+    #     if n==0:
+    #         return collection_name
+    #     else:
+    #         return f"{collection_name}({n})" 
+    
+    # @classmethod
+    # def find_data(cls, id):
+    #     with Session() as session:
+
+    #         result = session.query(RECORDING_DATA_RAWS).first()
+    #         return result
+    
+        

python/biopro/db/subject_data.py

@@ -0,0 +1,60 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+from biopro.db.base import Session
+
+from .base import Base
+
+class SubjectData(Base):
+    __tablename__ = "subject_datas"
+
+    id = Column(Integer, primary_key=True)
+    subject_id = Column(Integer)
+    mode = Column(JSONB)
+    data = Column(JSONB)
+    user_auth = Column(JSONB)
+    meta = Column(String(255))
+    project = Column(String(255))
+    deleted = Column(Boolean)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    @classmethod
+    def create_subject_data(cls, subject_id, project, meta, data):
+        with Session() as session:
+            subject = SubjectData(
+                subject_id = subject_id,
+                project = project,
+                meta= meta,
+                data = data
+            )
+            session.add(subject)
+            session.commit()
+            return subject
+        
+    # @classmethod
+    # def check_name_duplicate(cls, collection_name, parent, n):
+    #     with Session() as session:
+    #         result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
+    #         if result is None:
+    #             return cls.generate_name(collection_name, n)
+    #         else:
+    #             new_num = n + 1
+    #             # new_name =  f"{collection_name}({new_num})" 
+    #             return cls.check_name_duplicate(collection_name, parent, new_num)
+
+    # @classmethod
+    # def generate_name(cls, collection_name, n):
+    #     if n==0:
+    #         return collection_name
+    #     else:
+    #         return f"{collection_name}({n})" 
+    
+    # @classmethod
+    # def find_collection(cls, collection_name, parent):
+    #     with Session() as session:
+    #         result = session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
+    #         return result
+    
+        

python/biopro/device/device_cc2650.py

@@ -536,7 +536,7 @@ class CC2650Device(Device):
             self._master.log_warn('device', self.device_id, 'update_battery_info no response')
 
         else:
-            if data is not None and len(data) == 4 :
+            if data is not None and len(data) > 2 :
                 battery = struct.unpack('<H', data[1:3])[0]
                 if battery is not None:
                     self._battery = battery
@@ -662,7 +662,7 @@ class CC2650Device(Device):
         elif device_type == 'EISZeroOne':
             i = 0
             request_times = 0
-            while i < 7:
+            while i < 13:
                 try:
                     # send
                     code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, i)
@@ -2035,6 +2035,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         # print("local_name = ", local_name)
 
         # addr type is don't care in BMD380
+        print('scan_response:', list(scan_response))
         local_addr_type = int(scan_response[index:index + 1][0])
         # local_addr_type = 0xFF
         index = index + 1

python/biopro/device/manager.py

@@ -253,6 +253,7 @@ class DeviceInternalCommandHandler:
         return True
 
 
+# why inherit MasterDevice ?
 class DeviceManager(MasterDevice, Synchronized):
     """device manager. It manager the device libraries, found device, connected device
     and the control of the master device.
@@ -267,7 +268,6 @@ class DeviceManager(MasterDevice, Synchronized):
                  options: DeviceManagerOptions,
                  handler: Optional[DeviceInternalCommandHandler] = None):
         """
-
         :param options: manager options.
         :param handler: device internal command handler
         """
@@ -277,6 +277,7 @@ class DeviceManager(MasterDevice, Synchronized):
         if handler is None:
             handler = DeviceInternalCommandHandler()
 
+        # control server api
         self._handler: DeviceInternalCommandHandler = handler
         self._options: DeviceManagerOptions = options
 
@@ -286,7 +287,9 @@ class DeviceManager(MasterDevice, Synchronized):
         # hardware
         self._interface = options.interface
         self._master: Optional[MasterDevice] = None
+        # memory board
         self._centralMaster: Optional[MasterDevice] = None
+        # connected device
         self._device: List[CompletedDevice] = []
 
         # demo device
@@ -336,6 +339,10 @@ class DeviceManager(MasterDevice, Synchronized):
     def library_path(self) -> List[Path]:
         return self._repository.library_path
 
+    def get_device_status(self, mac_address) -> Optional[DeviceLibrary]:
+        device = self.get_device(mac_address)
+        return device.status
+
     @logging_info
     def reload_library(self):
         """reload device library"""
@@ -562,26 +569,28 @@ class DeviceManager(MasterDevice, Synchronized):
 
     @logging_verbose
     def get_device(self, device: Union[int, DeviceInfo]) -> Optional[CompletedDevice]:
-        print('get_device', device)
         """get connected device
 
         :param device: device ID or response info
         :return: CompletedDevice, None if not found.
         """
-        if isinstance(device, int):
-            for slave in self._device:
-                if slave.device_id == device:
-                    return slave
+        try:
+            if isinstance(device, int):
+                for slave in self._device:
+                    if slave.device_id == device:
+                        return slave
 
-        elif isinstance(device, str):
-            for slave in self._device:
-                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
-                    return slave
+            elif isinstance(device, str):
+                for slave in self._device:
+                    if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
+                        return slave
 
-        elif isinstance(device, DeviceInfo):
-            for slave in self._device:
-                if device.match(slave):
-                    return slave
+            elif isinstance(device, DeviceInfo):
+                for slave in self._device:
+                    if device.match(slave):
+                        return slave
+        except BaseException as e:
+            self.log_error('device not found', str(device))
 
         return None
 
@@ -823,6 +832,9 @@ class DeviceManager(MasterDevice, Synchronized):
 
         elif func == InternalInstruction.PREDEFINED_DISABLE_CACHE:
             self._device_disable_cache(device, *para)
+        
+        elif func == InternalInstruction.PREDEFINED_IDLE:
+            self._idle(device, *para)
 
         elif isinstance(device, DebugDevice):
             if func == InternalInstruction.PREDEFINED_NOTIFY:
@@ -842,6 +854,11 @@ class DeviceManager(MasterDevice, Synchronized):
                                               InternalInstruction.PREDEFINED_DATA_FORMAT,
                                               f)
 
+    def _idle(self, device: Device, expr: AnyStr):
+        self._handler.device_internal_command(device.device_id,
+                                                InternalInstruction.PREDEFINED_IDLE,
+                                                None)
+
     def _device_data_format_cali(self, device: Device, expr: str, cali: bytes = None):
         if cali is None:
             cali = device.calibration_info(expr)
@@ -1024,15 +1041,9 @@ class DeviceManager(MasterDevice, Synchronized):
             raise RuntimeError(DEVICE_NOT_FOUND, device)
 
         if DeviceCommonInstruction(instruction) is not None:
-            # print('deviceCommonInstr')
-            # print(instruction)
             device.call_instruction(instruction)
-
         elif instruction in device.library.instruction_table:
-            # print('instruction')
-            # print(instruction)
             device.call_instruction(instruction)
-
         else:
             raise RuntimeError(INSTRUCTION_UNKNOWN, instruction)
 

python/biopro/devlib/data.py

@@ -1,6 +1,7 @@
 import abc
 import struct
 import math
+import numpy
 from typing import Optional, TypeVar, Generic, Tuple, Dict, List, AnyStr
 from datetime import datetime
 
@@ -853,7 +854,7 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
 
     __slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
                  '_total_time_stamp', '_mode', '_cycle_start_time',
-                 '_mode_stop')
+                 '_mode_stop', '_show_data')
 
     def __init__(self):
         super().__init__()
@@ -868,6 +869,8 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         self._mode = 0
         self._cycle_start_time = []
 
+        self._show_data = False
+
     @property
     def name(self) -> str:
         return self.NAME
@@ -881,22 +884,24 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
     def decode(self, data: bytes) -> Optional[RecordingData]:
         if len(data) < 18:
             return None
+        voltage = 0
+        mem_cnt = data[1]
+        time_stamp: float = struct.unpack('<I', data[4:8])[0]  # unit: ms 0x18030000
+        current = struct.unpack('<i', data[8:12])[0]  # unit: nA
+        voltage = struct.unpack('<i', data[12:16])[0]  # unit: uV
+        impedance = struct.unpack('<i', data[16:20])[0]  # unit: mOm
 
-        current = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        voltage = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        impedance = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
-        finish_mode_falg = data[19]
+        cycle_number = struct.unpack('<H', data[20:22])[0]
+        finish_mode_falg = data[22]
+        battery = struct.unpack('<i', data[23:27])[0]
+        elite_notify_times = data[27]
+        notify_one = struct.unpack('<i', data[28:32])[0]
+        notify_two = struct.unpack('<i', data[32:36])[0]
+        notify_three = struct.unpack('<i', data[36:40])[0]
+        # self._show_data = True
 
-        mem_wrong_information = struct.unpack('>i', data[40:40+4])[0]
-
-        # print('decode', list(data[20:]))
-        mem_wrong = data[40]
-        mem_retry_cnt = data[41]
-        mem_green_wrong = data[42]
-        mem_green_retry_cnt = data[43]
-        ram_num = data[44]
+        mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
+        ram_num = data[47]
         broken_flag = data[-1]
 
         if (finish_mode_falg & 0b11110000 == 0b10100000):
@@ -917,10 +922,15 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                # print('|', time_stamp, '|', delta, '|', current, '|', voltage, '|', impedance,
-                #       '|', cycle_number, '|', finishMode, '@', str(self.device))
+                if self._show_data:
+                    print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
+                        '|', current, '|', voltage, '|', impedance, '|', cycle_number, 
+                        '|', notify_one, '|', notify_two, '|', notify_three, 
+                        '|', finishMode, '@', str(self.device))
+
                 # print('|', '{:10}'.format(time_stamp),
-                #       '|', '{:10}'.format(delta),
+                #       '|', '{:4}'.format(delta),
+                #       '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
                 #       '|', '{:10}'.format(current),
                 #       '|', '{:10}'.format(voltage),
                 #       '|', '{:10}'.format(impedance),
@@ -928,13 +938,9 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 #       '|', '{:1}'.format(finishMode),
                 #       '@', str(self.device), '|')
 
-                # print('|', '{:5}'.format(mem_wrong),
-                #       '|', '{:5}'.format(mem_retry_cnt),
-                #       '|', '{:5}'.format(mem_green_wrong),
-                #       '|', '{:5}'.format(mem_green_retry_cnt),
-                #       '|', '{:5}'.format(mem_wrong_information),
-                #       '|', '{:5}'.format(ram_num),
-                #       '|', '{:5}'.format(broken_flag),
+                # print('|', '{:5}'.format(mem_wrong_information),
+                #       '|', '{:2}'.format(ram_num),
+                #       '|', '{:2}'.format(broken_flag),
                 #       '@', str(self.device), '|')
                 pass
 
@@ -949,16 +955,23 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         ret.append_data(1, voltage)
         ret.append_data(2, impedance)
         ret.append_data(3, cycle_number)
+        ret.append_data(4, notify_one)
+        ret.append_data(5, notify_two)
+        ret.append_data(6, notify_three)
+        # ret.append_data(4, battery)
+        # ret.append_data(5, elite_notify_times)
+        # ret.append_data(6, mem_cnt)
+
+        # # memoryboard information
+        # ret.append_data(7, ram_num)
+        # ret.append_data(8, broken_flag)
+        # try:
+        #     ret.append_data(9, mem_wrong_information)
+        #     # print('append_data success, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+        # except:
+        #     print('append_data fail, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+
 
-        # memoryboard information
-        # ret.append_data(4, mem_wrong)
-        # ret.append_data(5, mem_retry_cnt)
-        # ret.append_data(6, mem_green_wrong)
-        # ret.append_data(7, mem_green_retry_cnt)
-        ret.append_data(4, ram_num)
-        ret.append_data(5, broken_flag)
-        ret.append_data(6, mem_wrong_information)
-        # ret.append_data(4, ram_num)
     
         if cycle_number != self._cycle_number:
             # notify cycle_number change
@@ -1333,8 +1346,8 @@ class EISZeroOneDataDecoder(RecDataDecoder):
     __slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
                  '_total_time_stamp', '_mode', '_cycle_start_time',
                  '_mode_stop', '_last_time_stamp', '_last_delta', '_cali_coeff',
-                 'cali_coeff', '_ac_amp', '_mode', '_freq_start', '_freq_stop',
-                 '_freq_direction', '_last_phase', '_first_phase_flag')
+                 'cali_coeff', '_ac_amp', '_mode',
+                 '_last_phase', '_first_phase_flag', '_show_data')
 
     def __init__(self, cali_coeff: bytes = None):
         super().__init__()
@@ -1347,17 +1360,15 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         self._mode_stop = 0
 
         self._cycle_start_time = []
-        self._ac_amp: int = 0
         self._mode: int = 0
-        self._freq_start: int = 0
-        self._freq_stop: int = 0
-        self._freq_direction = 0
         self._last_phase = 0
         self._first_phase_flag = 1
 
         self._cali_coeff: Optional[bytes] = None
         self.cali_coeff: Optional[List[Tuple[int, int]]] = None
 
+        self._show_data = False
+
         if cali_coeff is not None:
             self._cali_coeff = cali_coeff
             self.cali_coeff = self._decode_cali_coeff(cali_coeff)
@@ -1366,12 +1377,27 @@ class EISZeroOneDataDecoder(RecDataDecoder):
     def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
         if cali_coeff != b'':
             cali_table = []
-            phase_para_a = []
-            phase_para_b = []
             hsrtia_a = []
             hsrtia_b = []
             hsrtia_c = []
             hsrtia_d = []
+            phase_coeff = []
+            phase_offset = []
+            
+            # phase_coeff = [[0]*4 for i in range(4)]
+            # phase_offset = [[0]*4 for i in range(4)]
+
+            phase_coeff = numpy.zeros([4, 4], dtype = int)
+            phase_offset = numpy.zeros([4, 4], dtype = int)  
+
+            ########################################
+            # phase_coeff
+            # [[gain0, g1, g2, g3] ----->最高頻
+            #  [gain0, g1, g2, g3] ----->中頻
+            #  [gain0, g1, g2, g3] ----->低頻
+            #  [gain0, g1, g2, g3] ----->最低頻
+            # ]
+            #######################################
 
             # print('cali_coeff', cali_coeff)
             cutoff_freq = struct.unpack('>I', cali_coeff[1:5])[0] * 100     #4
@@ -1382,57 +1408,95 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             # hsrtia_160k = struct.unpack('>I', cali_coeff[8:12])[0]         #4
 
             index = 20
-            for i in range(index, index+16, 8):
-                phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
-                phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0])
-
+            g = 0
+            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
             index = 40
-            for i in range(index, index+16, 8):
-                phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
-                phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0]) 
-
+            g = 0
+            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
             #Lv[0] 160k
             index = 60
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
 
             #Lv[1] 20k
             index = 80
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
 
             #Lv[2] 5k
             index = 100
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
 
             #Lv[3] 200R
             index = 120
             hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
-            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
 
-            # hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0])
-            # hsrtia_b.append(struct.unpack('>I', cali_coeff[index+5:index+9])[0]/1e6)
-            # hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e5)
-            # hsrtia_d.append(struct.unpack('>I', cali_coeff[index+13:index+17])[0]/1e6)
+            index = 140
+            g = 1
+            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            index = 160
+            g = 1
+            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            index = 180
+            g = 2
+            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            index = 200
+            g = 2
+            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            index = 220
+            g = 3
+            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            index = 240
+            g = 3
+            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
-            # print('cutoff_freq', cutoff_freq)
-            # print('hsrtia_a', hsrtia_a)
-            # print('hsrtia_b', hsrtia_b)
-            # print('hsrtia_c', hsrtia_c)
-            # print('hsrtia_d', hsrtia_d)
-            # print('phase_para_a', phase_para_a)
-            # print('phase_para_b', phase_para_b)
+            print('cutoff_freq', cutoff_freq)
+            print('hsrtia_a', hsrtia_a)
+            print('hsrtia_b', hsrtia_b)
+            print('hsrtia_c', hsrtia_c)
+            print('phase_coeff')
+            print(phase_coeff)
+            print('phase_offset')
+            print(phase_offset)
 
-            cali_table.append((cutoff_freq, phase_para_a, phase_para_b, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
+            cali_table.append((cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
 
             return cali_table
         else:
@@ -1456,15 +1520,20 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        ch1 = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        ch2 = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        ch3 = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
-        d19 = data[19]
-        gain = (d19 & 0x0F)
-        finishMode = (d19 & 0x80) >> 7        
+        ch1 = struct.unpack('>i', data[1+3:5+3])[0]  # unit: 1/1000 nA
+        ch2 = struct.unpack('>i', data[5+3:9+3])[0]  # unit: mV
+        ch3 = struct.unpack('>i', data[9+3:13+3])[0]  # unit: kOm
+        time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0]  # unit: ms
+        cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
+        d19 = data[19+3]
+        gain = data[20+3]
+        finishMode = (d19 & 0x80) >> 7  
+        ch4 = struct.unpack('<i', data[21+3:25+3])[0] # Amp[uV]
         
+        notify_one = struct.unpack('<i', data[25+3:29+3])[0]
+        notify_two = struct.unpack('<i', data[29+3:33+3])[0]
+        notify_three = struct.unpack('<i', data[33+3:37+3])[0]
+
         if time_stamp == 0:
             self._start_return_data = True
 
@@ -1472,7 +1541,7 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             return None
 
         if time_stamp != 0 and self._start_return_data == True:
-            if (self._mode == 0):
+            if (self._mode == 0 or self._mode == 5):
                 time_stamp, delta, ret_get_time_stamp = self.eis_get_time_stamp(time_stamp)
             else:
                 time_stamp, delta, ret_get_time_stamp = self.get_time_stamp(time_stamp)
@@ -1481,101 +1550,104 @@ class EISZeroOneDataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                if self.cali_coeff is not None and self._mode == 0:
-                    phase_para_a = []
-                    phase_para_b = []
+                if self.cali_coeff is not None and (self._mode == 0 or self._mode == 5):
                     hsrtia_a = []
                     hsrtia_b = []
                     hsrtia_c = []
                     hsrtia_d = []
-                    cutoff_freq, phase_para_a, phase_para_b, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
-                    voltage_amp = round(self._ac_amp * 800 / 2047) # use UI value
-                    if (self._freq_start > self._freq_stop):
-                        self._freq_direction = 0
-                    else:
-                        self._freq_direction = 1
+                    cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
 
-                if (self._mode == 0):
+                if (self._mode == 0 or self._mode == 5):
                     img = ch1
                     real = ch2
                     freq = ch3
+                    fre_idx = 0
+                    voltage_amp = round(ch4 / 1000) # Amp[mV]
 
-                    voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 / cutoff_freq ** 2)
+                    # rolloff_cali = cutoff_freq/1e5
+                    rolloff_cali = hsrtia_c[gain]
+                    voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 /  rolloff_cali ** 2 / 1e4)
 
                     # if (gain == 3):
                     #     current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
                     # else:
-                    current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
-                    # print(current)
-                    # print(voltage_mag)
-                    # print(hsrtia_a[gain])
-                    # print(hsrtia_b[gain])
-                    # print(hsrtia_c[gain])
+                    
+                    current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain]
+                    # current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
+                    
 
                     if (current != 0):
-                        # impedance = voltage_amp * 1000_000 / 1.414213 / current 
-                        impedance = voltage_amp * 707106.78 / current 
+                        # impedance[mOhm] = voltage_amp[mv] * 1000000 / 1.414213 / current[nA]       #RMS=amp*SQRT(2), SQRT(2)=1.414213
+                        impedance = voltage_amp * 707106.78 / current
                     else:
                         impedance = 0
 
-                    if (real > 0):
-                        raw_phase = math.atan(img / real) * 180 / math.pi
-                    elif (real == 0):
-                        raw_phase = 90
-                    else:
-                        raw_phase = math.atan(img / real) * 180 / math.pi + 180
+                    raw_phase = math.atan2(img , real) * 180 / math.pi
 
                     if (freq >= 1000000): # 10000 Hz
-                        i = 0
+                        fre_idx = 0
                     elif (freq >= 10000): # 100 Hz
-                        i = 1
+                        fre_idx = 1
                     elif (freq >= 1000): # 10 Hz
-                        i = 2
+                        fre_idx = 2
                     elif (freq >= 1): # 0.01 Hz
-                        i = 3
+                        fre_idx = 3
                     
-                    ideal_raw_phase = phase_para_a[i] /1e10 * freq + phase_para_b[i] / 1e6
-
+                    ideal_raw_phase = phase_coeff[gain][fre_idx] /1e10 * freq + phase_offset[gain][fre_idx] / 1e6
                     phase = raw_phase - ideal_raw_phase
+                    phase = phase % 180 if phase % 180<=90 else phase % 180-180
 
-                    if (self._first_phase_flag):
-                        self._last_phase = phase
-                        self._first_phase_flag = 0
-                    elif (abs(phase - self._last_phase) >= 200):
-                        phase -= 360
-                        self._last_phase = phase
+                    # last_phase_to90 = self._last_phase % 180 if self._last_phase % 180<=90 else self._last_phase % 180-180
+                    # diff = phase - last_phase_to90
 
-                    imag_after_cal = impedance * math.sin(round(phase) * math.pi / 180)
-                    real_after_cal = impedance * math.cos(round(phase) * math.pi / 180)
+                    # if (self._first_phase_flag):
+                    #     # self._last_phase = phase
+                    #     self._first_phase_flag = 0
+                    # elif (abs(diff) >= 90):
+                    #     phase = self._last_phase + diff + (180 if diff<0 else-180)
+                    # else:
+                    #     phase = self._last_phase + diff
+                    # self._last_phase = phase
 
+                    imag_after_cal = impedance * math.sin(phase * math.pi / 180)
+                    real_after_cal = impedance * math.cos(phase * math.pi / 180)
 
-                if (self._mode == 0):
-                    # print('|', '{:10}'.format(time_stamp),
-                    #     '|', '{:5}'.format(delta),
-                    #     '|', '{:6}'.format(ch1),
-                    #     '|', '{:6}'.format(ch2),
-                    #     '|', '{:8}'.format(ch3 / 100),
-                    #     '|', '{:6}'.format(round(voltage_mag)),
-                    #     '|', '{:5}'.format(int(imag_after_cal)),
-                    #     '|', '{:5}'.format(int(real_after_cal)),
-                    #     '|', '{:5}'.format(round(impedance)),
-                    #     '|', '{:5}'.format(round(phase, 1)),
-                    #     '|', '{:5}'.format(round(current, 3)),
-                    #     '|', '{:1}'.format(gain),
-                    #     '|', '{:1}'.format(finishMode),
-                    #     '@', str(self.device), '|')
-                    pass
-                else:
-                    # print('|', '{:10}'.format(time_stamp),
-                    #     '|', '{:5}'.format(delta),
-                    #     '|', '{:5}'.format(ch1),
-                    #     '|', '{:5}'.format(ch2),
-                    #     '|', '{:5}'.format(ch3),
-                    #     '|', '{:5}'.format(cycle_number),
-                    #     '|', '{:1}'.format(gain),
-                    #     '|', '{:1}'.format(finishMode),
-                    #     '@', str(self.device), '|')
-                    pass
+                if self._show_data:
+                    if (self._mode == 0 or self._mode == 5):
+                        print('|', '{:10}'.format(time_stamp),
+                              '|', '{:5}'.format(delta),
+                              '|', '{:5}'.format(ch1),                            #raw_img
+                              '|', '{:5}'.format(ch2),                            #raw_real
+                              '|', '{:8}'.format(ch3 * 10), '[mHz]',              #Frequency [mHz]
+                              '|', '{:5}'.format(cycle_number),                   #cycle
+                              '|', '{:5}'.format(round(imag_after_cal)), '[Ohm]', #Z_imag [Ohm]
+                              '|', '{:5}'.format(round(real_after_cal)), '[Ohm]', #Z_real [Ohm]
+                              '|', '{:5}'.format(round(impedance)), '[Ohm]',      #Impedance [Ohm]
+                              '|', '{:5}'.format(round(phase*1000)), '[mdegree]', #Phase [millidegree]
+                              '|', '{:5}'.format(round(current)), '[nA]',         #Current [nA]
+                              '|', '{:1}'.format(gain),                           #gain
+                              '|', '{:1}'.format(finishMode),                     #finishMode
+                              '@', str(self.device), '|', flush = True)
+
+                        print('|', '{:10}'.format(time_stamp),
+                              '|', '{:5}'.format(delta),
+                              '|', '{:5}'.format(notify_one),
+                              '|', '{:5}'.format(notify_two),
+                              '|', '{:5}'.format(notify_three),
+                              '|', '{:5}'.format(voltage_amp),                    #amp[mV]
+                              '|', flush = True)
+                        pass
+                    else:
+                        print('|', '{:10}'.format(time_stamp),
+                            '|', '{:5}'.format(delta),
+                            '|', '{:5}'.format(ch1),
+                            '|', '{:5}'.format(ch2),
+                            '|', '{:5}'.format(ch3),
+                            '|', '{:5}'.format(cycle_number),
+                            '|', '{:1}'.format(gain),
+                            '|', '{:1}'.format(finishMode),
+                            '@', str(self.device), '|', flush = True)
+                        pass
 
         if finishMode == True:
             print("finishMode full data:", list(data), datetime.now())
@@ -1584,23 +1656,37 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        if (self._mode == 0):                           #EIS Mode
-            ret.append_data(3, cycle_number)
-            ret.append_data(0, ch1)                     #Raw Imag  
-            ret.append_data(1, ch2)                     #Raw Real
+        if self._mode == 0 or self._mode == 5:                           #EIS Mode
+            ret.append_data(0, ch1)                     #raw_img
+            ret.append_data(1, ch2)                     #raw_real
             ret.append_data(2, ch3 * 10)                #Frequency [mHz]
+            ret.append_data(3, cycle_number)            #cycle
             ret.append_data(4, round(imag_after_cal))   #Z_imag [Ohm]
             ret.append_data(5, round(real_after_cal))   #Z_real [Ohm]
             ret.append_data(6, round(impedance))        #Impedance [Ohm]
-            ret.append_data(7, round(phase))            #Phase [degree]
+            ret.append_data(7, round(phase*1000))       #Phase [millidegree]
             ret.append_data(8, round(current))          #Current [nA]
-            ret.append_data(9, gain)                    #Gain Level
+            ret.append_data(9, gain)                    #gain
+            
+            #debug data
+            ret.append_data(10, notify_one)
+            ret.append_data(11, notify_two)
+            ret.append_data(12, notify_three)
+            ret.append_data(13, voltage_amp)            #amp[mV]
 
-        else:                                           #CV Mode
-            ret.append_data(3, cycle_number)
+
+
+        else:
+            if (self._mode == 1 or self._mode == 2 or self._mode == 3):
+                ch1 = ch1 * (-1)
+            if (self._mode == 4):
+                ch1 = ch1 * (-1)
+                ch3 = ch3 * (-1)
+                                                           #CV Mode
             ret.append_data(0, ch1)                     #Iin     [nA]
             ret.append_data(1, ch2)                     #Vset    [nV]
             ret.append_data(2, ch3)                     #Vout    [nV]
+            ret.append_data(3, cycle_number)
 
         if cycle_number != self._cycle_number:
             # notify cycle_number change

python/biopro/devlib/device.py

@@ -651,17 +651,9 @@ class DeviceInstruction:
     VIS_DEVICE_DONE = 0x20
     """identify device done"""
 
-    VIS_CC_ZERO = 0x40
-
-    VIS_ASK = 0x30
-    """ask in virtual instruction"""
-
     VIS_STI = 0xC0
     """stimulation on virtual instruction"""
 
-    VIS_FUH = 0x90
-    """flush virtual instruction"""
-
     VIS_INT = 0x60
     """interrupt virtual instruction"""
 
@@ -732,7 +724,6 @@ class DeviceCommonInstruction:
     STOP_STIMULATE = "stop_stimulate"
     VIS_DEVICE_DETECT = 'VIS_DEVICE_DETECT'
     VIS_DEVICE_DONE = 'VIS_DEVICE_DONE'
-    VIS_CC_ZERO = 'VIS_CC_ZERO'
     CIS_VOLT = 'CIS_VOLT'
     CIS_VERSION = 'CIS_VERSION'
 
@@ -747,19 +738,15 @@ class DeviceCommonInstruction:
         elif instruction == cls.START:
             return '_data_format("TDC4VAF2")', '_notify(True)', 'VIS_STI', '_sync(True)'
         elif instruction == cls.INTERRUPT:
-            return '_sync(False)', '_notify(False)', 'VIS_INT'
+            return '_notify(False)', 'VIS_INT', '_sync(False)'
         elif instruction == cls.CLOSE:
             return '_sync(False)', '_notify(False)', 'VIS_INT'
-        elif instruction == cls.FLUSH:
-            return 'VIS_FUH',
         elif instruction == cls.CALL:
             return 'VIS_CAL',
         elif instruction == cls.VIS_DEVICE_DETECT:
             return 'VIS_DEVICE_DETECT',
         elif instruction == cls.VIS_DEVICE_DONE:
             return 'VIS_DEVICE_DONE',
-        elif instruction == cls.VIS_CC_ZERO:
-            return 'VIS_CC_ZERO',
         elif instruction == cls.RECORD:
             return 'VIS_STARTR',
         elif instruction == cls.RECORD_ALL:

python/biopro/devlib/domain.py

@@ -4,6 +4,7 @@ from biopro.util.text import part_suffix
 from . import *
 from .expression import *
 
+import json
 
 class DeviceParameterError(RuntimeError):
     __slots__ = ()
@@ -309,6 +310,8 @@ class ParameterValueDomain(ParameterDomain, metaclass=abc.ABCMeta):
                 return f
 
     def valid_para(self, value: Any) -> bool:
+        if isinstance(value, list):
+            return True
         f, t = self.range
         return f <= float(value) < t
 
@@ -489,8 +492,12 @@ class ParameterCollectionValueOperator(metaclass=abc.ABCMeta):
 
     @classmethod
     def parse(cls, expr: Union[int, str]) -> 'ParameterCollectionValueOperator':
+        # parse epression then create value_operator
         if isinstance(expr, int):
             return SingleValueOperator(None, expr)
+        
+        elif isinstance(expr, list):
+            return CollectValueOperator((0, len(expr)), expr)
 
         elif expr == '*':
             return AddAllValueOperator
@@ -498,6 +505,10 @@ class ParameterCollectionValueOperator(metaclass=abc.ABCMeta):
         elif expr == ':=':
             return CollectValueOperator((None, None), [])
 
+        elif '[' in expr and ']' in expr:
+            v = json.loads(expr)
+            return CollectValueOperator((0, len(v)), v)
+
         elif '=' in expr:
             a, v = part_suffix(expr, '=')
 
@@ -508,6 +519,7 @@ class ParameterCollectionValueOperator(metaclass=abc.ABCMeta):
                     return CollectValueOperator((None, None), v)
 
                 else:
+                    # get list length (old way)
                     a, b = part_suffix(a, ':')
                     a = int(a) if len(a) else None
                     b = int(b) if len(b) else None
@@ -602,8 +614,8 @@ class ParameterCollectionDomain(ParameterDomain, metaclass=abc.ABCMeta):
     def __init__(self, domain: ParameterDomain):
         super().__init__()
 
-        if isinstance(domain, ParameterCollectionDomain):
-            raise RuntimeError('cannot compose with parameter collection domain')
+        # if isinstance(domain, ParameterCollectionDomain):
+        #     raise RuntimeError('cannot compose with parameter collection domain')
 
         self._domain = domain
 
@@ -725,6 +737,7 @@ class ParameterListDomain(ParameterCollectionDomain):
         if oper == AddAllValueOperator:
             raise ValueError("list parameter cannot accept '*' (all) value")
 
+        # d: domain, sz: lsit length, i: slice(a, b), v: list value
         d = self.element_domain
         sz = len(target)
         i = oper.index(sz)

python/biopro/devlib/encoder.py

@@ -119,7 +119,10 @@ class DeviceConfigurationEncoder:
                 e.write(b'L\0')
 
             else:
-                parameter_type = cls._value_type(value[0])
+                parameter_type = cls._value_type(max(value))
+                for v in value:
+                    if isinstance(v, int) and v < 0:
+                        parameter_type = parameter_type.lower()
                 e.write(b'L')
                 e.write(parameter_type.encode())
                 e.u8(sz)
@@ -153,7 +156,8 @@ class DeviceConfigurationEncoder:
         if isinstance(value, bool):
             e.u8(1 if value else 0)
 
-        elif isinstance(value, str):
+        elif isinstance(value, str) or isinstance(value, list):
+            value = str(value)
             e.encode_string(value)
 
         elif isinstance(value, int):
@@ -170,7 +174,7 @@ class DeviceConfigurationEncoder:
         if isinstance(value, bool):
             return '?'
 
-        elif isinstance(value, str):
+        elif isinstance(value, str) or isinstance(value, list):
             return 'p'
 
         elif isinstance(value, int):

python/biopro/devlib/instruction.py

@@ -283,6 +283,7 @@ class InternalInstruction(SingleInstruction):
     PREDEFINED_SET = '_set'
     PREDEFINED_CDR = '_cdr'
     PREDEFINED_DISABLE_CACHE = '_disable_cache'
+    PREDEFINED_IDLE = '_idle'
 
     PREDEFINED = (
         PREDEFINED_SLEEP,
@@ -294,6 +295,7 @@ class InternalInstruction(SingleInstruction):
         PREDEFINED_SET,
         PREDEFINED_CDR,
         PREDEFINED_DISABLE_CACHE,
+        PREDEFINED_IDLE,
     )
 
     __slots__ = ('_expr', '_para')
@@ -1268,14 +1270,15 @@ class InstructionTable(DictNode['Instruction']):
                          instruction: str):
         """call instruction. chain context with :class:`DeviceInternalInstructionScope`
 
-        :param master: master device
-        :param device: device
+        :param master: DeviceManager
+        :param device: CompletedDevice
         :param context: scope
         :param instruction: instruction name
         :raises InstructionNotFound: If instruction not found.
         """
 
         try:
+            # ex. start 
             ins = self[instruction]
 
         except KeyError as e:
@@ -1284,6 +1287,7 @@ class InstructionTable(DictNode['Instruction']):
         else:
             context = context.chain(InstructionTableScope(self))
 
+            # ex. _data_format, _sync, _notify
             for single in ins.eval_instruction(context):
                 if isinstance(single, InternalInstruction):
                     if not single.handle_internal_instruction(master, device, context):

python/biopro/devlib/library.py

@@ -510,9 +510,10 @@ class DeviceParameter(JsonSerialize):
         :param para: parameter name
         :param oper: operator expression
         """
+        # parse operator return CollectValueOperator instance
         if not isinstance(oper, ParameterCollectionValueOperator):
             oper = ParameterCollectionValueOperator.parse(oper)
-
+        
         table = self._library.parameter_table
         info = table[para]
         domain = info.domain
@@ -528,6 +529,7 @@ class DeviceParameter(JsonSerialize):
             old = list(target)
 
         try:
+            # replace target with new oper
             domain.oper_para(target, oper, self._context)
         except RuntimeError as e:
             raise IllegalParameterValueError(para, str(oper)) from e
@@ -966,7 +968,7 @@ class CompletedDevice(Device):
     """
     __slots__ = ('_master', '_device_id', '_device', '_library', '_context',
                  '_parameter', '_configuration', '_lock', '_feature_mask',
-                 '_cache_battery', '_cache_battery_timestamp', '_coeff')
+                 '_cache_battery', '_cache_battery_timestamp', '_coeff', '_status', '_occupied_by_project')
 
     def __init__(self, master: MasterDevice, library: DeviceLibrary, device_id: int, device: Device):
         """
@@ -976,11 +978,17 @@ class CompletedDevice(Device):
         :param device_id: device id
         :param device: slave device implementation
         """
+        # DeviceManager
         self._master = master
         self._device = device
         self._device_id = device_id
         self._library = library
 
+        # device status ( 0: idle, 1: working, 2: error, 3: power off)
+        self._status = 0
+        # device be occupied by project
+        self._occupied_by_project = None
+
         # context
         s1 = library.constant
         s2 = DeviceScope(self)
@@ -1008,6 +1016,10 @@ class CompletedDevice(Device):
     def device_id(self) -> int:
         return self._device_id
 
+    @property
+    def memory_board(self) -> int:
+        return self._device_id
+
     @property
     def device_name(self) -> str:
         return self._device.device_name
@@ -1020,6 +1032,10 @@ class CompletedDevice(Device):
     def mac_address(self) -> ADDRESS:
         return self._device.mac_address
 
+    @property
+    def mac_address_in_str(self) -> str:
+        return ':'.join('{:02x}'.format(b) for b in self._device.mac_address).upper()
+
     @property
     def device(self) -> Device:
         return self._device
@@ -1056,11 +1072,26 @@ class CompletedDevice(Device):
         return self._library
 
     # device lock
-
     @property
     def lock(self) -> DeviceLock:
         return self._lock
 
+    @property
+    def status(self) -> int:
+        return self._status
+    
+    @status.setter
+    def status(self, new_status):
+        self._status = new_status
+
+    @property
+    def occupied_by_project(self) -> str:
+        return self._occupied_by_project
+    
+    @occupied_by_project.setter
+    def occupied_by_project(self, new_occupied_by_project):
+        self._occupied_by_project = new_occupied_by_project
+
     # device parameter getter/setter
 
     def parameters(self) -> List[str]:
@@ -1084,6 +1115,8 @@ class CompletedDevice(Device):
         return self._configuration.get_parameter(name, False)
     
     def set_multi_parameters(self, parameter):
+        if len(parameter) == 0:
+            return
         for (name, value) in parameter[0].items():
             if name != 'target':
                 self.set_parameter(name, value)
@@ -1107,6 +1140,11 @@ class CompletedDevice(Device):
                 self._parameter.set_parameter(name, value)
                 # raise RuntimeError('illegal parameter value : ' + value) from e
             else:
+                if name == 'MODE':
+                    if self.library_name.startswith('Elite_EDC') or 'EIS' in self.library_name:
+                        self.set_parameter('CTRL_HIGH_Z_15', self.get_parameter('HIGHZ_TABLE')[value])
+                        self.set_parameter('TIME_DURATION', 0)
+
                 self._parameter.set_parameter(name, value)
 
         on_change = info.on_change
@@ -1115,7 +1153,8 @@ class CompletedDevice(Device):
                 self._master.log_warn('on_change instruction not found : ' + on_change)
 
             else:
-                self.call_instruction(on_change)
+                if self._status == 1:
+                    self.call_instruction(on_change)
 
     # device instruction call
 
@@ -1253,21 +1292,31 @@ class CompletedDevice(Device):
 
     def central_version_get(self) -> Optional[list]:
         return self._device.central_version_get()
+    
+    def save_data_to_subject(self, project, meta, device, subject_id):
+        self._master._handler.save_data_to_subject(project, meta, device, subject_id)
 
     # utility method
 
     def as_json(self) -> JSON_OBJECT:
         return {
+            'id': self.device_id,
+            'name': self.device_name,
+            'status': self._status,
             'device_id':       self.device_id,
             'device_name':     self.device_name,
             'device_address':  list(self.mac_address),
+            'device_status': self._status,
+            'mac_address': self.mac_address_in_str,
+            'memory_board': self.memory_board,
+            'serial_number':   self.serial_number.as_json(),
+            'version':  self.device_version,
             'battery':         self.battery,
             'parent':          self.parent,
             'recording_file_name':      self.recording_file_name,
-            'device_version':  self.device_version,
-            'serial_number':   self.serial_number.as_json(),
             'library_name':    self._library.name,
             'library_version': str(self._library.version),
+            'occupied_by_project': self._occupied_by_project,
             'configuration':   self.configuration.as_json(list_hide=True),
         }
 

python/biopro/impl/ext_mem.py

@@ -24,8 +24,10 @@ def zero_buffer(size: int) -> List[int]:
     return [0] * size
 
 class MultiExtMemSpiInterface(LowLevelHardwareInterface):
-    MEM_INS_MARKED = [MEM_INS_WRITE, 0, 2, 1, 1]
-    MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
+    MEM_INS_MARKED1 = [MEM_INS_WRITE, 0, 2, 0x5A, 0xA5]
+    MEM_INS_MARKED2 = [MEM_INS_WRITE, 0, 6, 0x5A, 0xA5]
+    MEM_INS_MARKED3 = [MEM_INS_WRITE, 0, 10, 0x5A, 0xA5]
+    # MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
 
     __slots__ = ('_selector', '_wait_for_first_data', '_spi', '_tx_buffer_header', '_tx_buffer_data',
                  'pin_busy', 'pin_mem_req', 'pin_mem_sel', 'pin_ram_sel',
@@ -33,7 +35,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                  '_pin_ram_sel_value', '_pin_mem_sel_value', '_pin_mem_req_value',
                  '_read_green_times','_read_red_times',
                  '_elite_data_len', '_mem_header_len', '_mem_tailer_len', '_single_data_len',
-                 '_head_wrong_cnt')
+                 '_head_wrong_cnt', '_pin_busy_value')
 
     def __init__(self,
                  select: Selector,
@@ -44,15 +46,15 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
         self._elite_data_len = 40
         self._mem_header_len = 3
-        self._mem_tailer_len = 8
+        self._mem_tailer_len = 6
         self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
 
         # buffer
-        self._tx_buffer_header = [0] * 11
+        self._tx_buffer_header = [0] * 64
         self._tx_buffer_data = [0] * (self._single_data_len * 10 + 3)
 
         # memory control pin
-        self.pin_busy = OutputPin.get_used(P3Pin.MEM_BZY, True)
+        self.pin_busy: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_BZY)
         self.pin_mem_req = OutputPin.get_used(P3Pin.MEM_REQ, False)
         self.pin_mem_sel = OutputPin.get_used(P3Pin.MEM_RST, True) # MEM_RST -> actually which memory board is assign
         self.pin_ram_sel: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_SEL) # MEM_SEL -> actually is RAM_SEL, which RAM is assign
@@ -60,6 +62,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         self._pin_ram_sel_value = [bool(self.pin_ram_sel) for _ in range(Selector.SIZE)]
         self._pin_mem_sel_value = [bool(self.pin_mem_sel) for _ in range(Selector.SIZE)]
         self._pin_mem_req_value = [bool(self.pin_mem_req) for _ in range(Selector.SIZE)]
+        self._pin_busy_value = [bool(self.pin_busy) for _ in range(Selector.SIZE)]
 
         self._read_green_times = 0
         self._read_red_times = 0
@@ -74,6 +77,8 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
     def set_pin_mem_req(self, value: bool):
         channel = self.select
+        # if self._pin_mem_req_value[channel] == value:
+        #     print('last_req_sig[channel] == value', channel, self._pin_mem_req_value[channel], value, datetime.now())
         self.pin_mem_req.output(value)
         self._pin_mem_req_value[channel] = value
 
@@ -94,6 +99,14 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             self._pin_ram_sel_value[channel] = True
         return self._pin_ram_sel_value[channel]
 
+    def get_pin_busy(self):
+        channel = self.select
+        if self.pin_busy.input() == 0:
+            self._pin_busy_value[channel] = False
+        else:
+            self._pin_busy_value[channel] = True
+        return self._pin_busy_value[channel]
+
     @property
     def select(self) -> int:
         return self._selector.channel
@@ -165,8 +178,56 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         print("read red data times", self._read_red_times)
         return data
 
+    def _compare_green_data_addr_and_flag(self, data: Union[bytes, List[int]], device: int):
+
+        green_data_section1 = data[3:7]
+        green_data_section2 = data[7:11]
+        green_data_section3 = data[11:15]
+        green_data_section = []
+
+        if green_data_section1 == green_data_section2:
+            green_data_section = green_data_section1
+
+        elif(green_data_section2 == green_data_section3 or green_data_section1 == green_data_section3):
+            print("green data not equal: = ", data[3:15])
+            print("green data print:", data, device, datetime.now())
+            green_data_section = green_data_section3
+
+        else:
+            print("green data not equal: = ", data[3:15])
+            print("green data print:", data, device, datetime.now())
+            green_data_section = green_data_section3 # use last data
+
+
+        return green_data_section
+
+    def _print_ram_all_data(self):
+        addr = 0
+        red_length = int(7000 / 2)
+        tx_temp = [0] * (red_length + 3)
+
+        while True:
+            tx_temp[0] = MEM_INS_READ
+            tx_temp[1] = ((addr >> 8) & 0xFF)
+            tx_temp[2] = (addr & 0xFF)
+
+            ram_data = []
+            ram_data = self._spi.send_byte(tx_temp)
+            ram_data[0:3] = [255, 255, 255]
+            print(list(ram_data), len(ram_data), addr)
+            addr += len(ram_data) - 3
+
+            if (7000 < addr + len(ram_data)):
+                del ram_data
+                break
+        print()
+
+        return
+
     def recv_memory(self, device: int) -> Optional[bytes]:
-        self.pin_busy.output(False)
+        # self.pin_busy.output(False)
+
+        # print('mem_req==ram_sel,[', self._pin_mem_req_value[device], ',', self._pin_ram_sel_value[device], ']')
 
         rx = []
 
@@ -191,7 +252,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                 self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
                 if (self._head_wrong_cnt[device] <= 5): # print 5 times
                     print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-                    print(list(data[0:7]))
+                    print(list(data))
 
             data[0:3] = [255, 255, 255]
             # ----------------------------------------------------------------------------------------------
@@ -210,13 +271,13 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
             #     if (self._head_wrong_cnt[device] < 10):
             #         print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-            #         print(list(data_first[0:7]))
+            #         print(list(data_first))
 
             # if (data_second[0] != 255 or data_second[1] != 255 or data_second[2] != 255):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
             #     if (self._head_wrong_cnt[device] < 10):
             #         print('data_second[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-            #         print(list(data_second[0:7]))
+            #         print(list(data_second))
 
             # if (data_first[3:] == data_second[3:]):
             #     data = data_first
@@ -228,59 +289,50 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             #     data = self.compare_green_data(data_first, data_second, data_third, len(tx_h))
             # ----------------------------------------------------------------------------------------------
 
-            # debug use
-            # green_data = []
-            # green_data = data
-            # print("_[Debug] @ spi green data = ", green_data)
+            green_data_section = self._compare_green_data_addr_and_flag(data, device)
 
-            length = (data[3] << 8) | data[4]
-            header = data[7]
-            elite_data_len = data[9]
+            length = (green_data_section[0] << 8) | green_data_section[1]
+            header = data[15]
+            elite_data_len = data[17]
+
+            if length <= 12:
+                if length < 12:
+                    print("length < 12")
+                    print("green data print:", data, device, datetime.now())
+
+                # if length == 0:
+                #     self._print_ram_all_data()
 
-            if length <= 4:
-                # print("length <= 4")
-                # print("green data print:", data, device, datetime.now())
                 return None
 
-            if data[5] != 0 or data[6] != 0:
+            if green_data_section[2] != 0xA5 or green_data_section[3] != 0x5A:
                 # give a default length if the data header did not update
-                length = 7000
-                print("green data: is not [0,0], = ", data[5:7])
+                print("green data: is not [0xA5, 0x5A], = ", data[5:7])
                 print("green data print:", data, device, datetime.now())
                 return None
 
-            if (length >= 7000):
+            # print('data=', list(data))
+            # print('Ram:', data[62])
+
+            if (length >= 4000):
                 flag_print = True
                 print("green data: big length:", length)
 
             if (header != 255):
                 flag_print = True
                 print("green data: header is not 255: ", header)
+                # self._print_ram_all_data()
 
             if (elite_data_len != self._elite_data_len):
                 flag_print = True
                 print("green data: length is not", self._elite_data_len, ": ", elite_data_len)
 
             if (flag_print):
-                print("green data print:", data, device, datetime.now())
+                print("green data print:", data, device, datetime.now(), '\n')
 
-            # neulive
-            # address += len(data) - 11
-            # tx_d = self._tx_buffer_data
-            # red_length = len(tx_d)
-
-            # elite read all data of ram
-            # address = 4
-            # red_length = length - 1 
-            # tx_d = [0] * red_length
-
-            address = 4
+            address = 12
             red_length = int(length / 2)
-            tx_d = [0] * red_length
-
-            # elite read len(_tx_buffer_data) byte
-            # address = 4
-            # tx_d = self._tx_buffer_data
+            tx_d = [0] * (red_length + 3)
 
             while True:
                 tx_d[0] = MEM_INS_READ
@@ -319,29 +371,67 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                     address += len(data) - 3
                     del data
 
-            # print("_[Debug] @ spi recv data rx = ")
+            # last_index = 0
+            # print("_[Debug] @ spi recv data rx, ram_select:", self._pin_ram_sel_value[device], ",", datetime.now())
             # for i in range(0, len(rx), self._single_data_len):
-            #     print(rx[i:i+self._single_data_len])
+            #     last_index = i
+            #     # print(rx[i:i+self._single_data_len])
+            #     if i == 0:
+            #         print(rx[0:8], 'ram:', rx[47])
+
+            # if last_index != 0:
+            #     print(rx[last_index:last_index+8], 'ram:', rx[last_index+47])
             # print()
 
             # /* 
             #  * red data formate:
             #  * ramHdr, ramHdr, ramHdr,                                   (3B)
             #  * 255, #, data_length,                                      (3B)
-            #  * data,                                                     (20B)
+            #  * data,                                                     (40B)
             #  * red_wrong, red_retry_cnt, green_wrong, green_retry_cnt,   (4B)
-            #  * 255, #, data_length,                                      (3B) 
+            #  * check_num,                                                (1B)
             #  *                                                                  */
 
+            # read again if check num is wrong
+            index = 0
+            check_number_print = False
+            for i in range(0, len(rx), self._single_data_len):
+                check_sum = sum(rx[i : i + self._single_data_len - 1]) & 0b11111111
+                # print(check_sum, rx[i + self._single_data_len - 1])
+
+                if (check_sum != rx[i + self._single_data_len - 1]):
+                    # print('check_sum wrong, origin value:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
+                    tx_d = [0] * (self._single_data_len + 3)
+                    address = 12 + self._single_data_len * index
+                    tx_d[0] = MEM_INS_READ
+                    tx_d[1] = ((address >> 8) & 0xFF)
+                    tx_d[2] = (address & 0xFF)
+
+                    data = []
+                    data = self._spi.send_byte(tx_d)
+                    data[0:3] = [255, 255, 255]
+                    rx[i : i + self._single_data_len] = data[3:]
+                    print('check_sum wrong, read again:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
+                    check_number_print = True
+                index = index + 1
+
+            if check_number_print:
+                print('check_sum wrong:', device, datetime.now())
+                for i in range(0, len(rx), self._single_data_len):
+                    print(rx[i:i+self._single_data_len])
+                print()
+
             # mark read
-            self._spi.send_byte(self.MEM_INS_MARKED)
+            self._spi.send_byte(self.MEM_INS_MARKED1)
+            self._spi.send_byte(self.MEM_INS_MARKED2)
+            self._spi.send_byte(self.MEM_INS_MARKED3)
 
         except BaseException as e:
             print(e)
 
-        finally:
-            # print("\n")
-            self.pin_busy.output(True)
+        # finally:
+        #     # print("\n")
+        #     self.pin_busy.output(True)
 
         return bytes(rx)
 

python/biopro/impl/interface_uart.py

@@ -28,7 +28,7 @@ class UARTInterface(LowLevelHardwareInterface):
         self._serial = serial.Serial(self._port,
                                      baudrate=self._baudrate,
                                      timeout=0,
-                                     writeTimeout=0.01)
+                                     writeTimeout=1)
         # deprecate function name which change at version 3.0
         self._serial.flushInput()
         self._serial.flushOutput()

python/biopro/impl/selector.py

@@ -118,13 +118,13 @@ class Selector:
         self._p2.output(p[2])
 
         # if (value == 4 and self._last_sel != 6):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
         # elif (value == 5 and self._last_sel != 4):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
         # elif (value == 7 and self._last_sel != 5):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
         # elif (value == 6 and self._last_sel != 7):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
             
         self._last_sel = value
 

python/biopro/project/action.py

@@ -1,65 +1,34 @@
 
 class Action():
-    def __init__(self, task, action_id, action):
-        self._task = task
-        self._id:str = action_id
-        self._type:str = action['type']
-        self._target:str = action['target']
-        self._condition_list:list[str] = action['condition']
-        self._duration = action.get('duration', None)
-        self._goto = action.get('goto', None)
-        self._cycle = action.get('cycle', None)
-        
-        self._instruction = None
-
-        self.update_instruction()
+    def __init__(self, action_id, action):
+        self._id: str = action_id
+        self._type: str = action['type']
+        self._target: str = action['target']
+        self._condition : list[str] = action['condition']
+        # self._duration = action.get('duration', None)
+        # self._goto = action.get('goto', None)
+        # self._cycle = action.get('cycle', None)
     
+    @property
+    def id(self):
+        return self._id
+
     @property
     def type(self):
         return self._type
-
-    def update_instruction(self):
-        self._instruction = {
-            "device_instruction": {
-                "header": "call_instruction",
-                "device": self._target,
-                "arguments": {
-                    "instruction": self._type,
-                }
-            },
-            "device_parameter": {
-                "header": "set_multi_parameters",
-                "device": self._target,
-                "arguments": {
-                    "parameter": self._task.get_parameter_set_by_device(self._target),
-                }
-            },
-            "device_recording_file_name": {
-                "header": "update_recording_file_name_info",
-                "device":  self._target,
-                "arguments": {
-                    "content": self._task.file_name,
-                }
-            },
-            "device_parent": {
-                "header": "update_parent_info",
-                "device":  self._target,
-                "arguments": {
-                    "content": self._task.parent
-                }
-            }
+    
+    @property
+    def target(self):
+        return self._target
+    
+    @property
+    def condition(self):
+        return self._condition
+    
+    def as_json(self):
+        return {
+            'id': self._id,
+            'type': self._type,
+            'target': self._target,
+            'condition': self._condition
         }
-
-    def get_condition_list(self):
-        return self._condition_list
-
-    def get_instruction(self, value):
-        return self._instruction[value]
-
-    def get_instruction_list(self):
-        instruction_set = {
-            'start': ['device_parent', 'device_recording_file_name', 'device_parameter', 'device_instruction'],
-            'stop': ['device_instruction'],
-        }
-
-        return map(self.get_instruction, instruction_set[self._type])

python/biopro/project/condition.py

@@ -3,73 +3,143 @@ from time import time
 
 class Condition():
     def __init__(self, id, condition):
-        print('condition', id, condition)
         self._id = id
         self._type = condition['type']
         self._comparsion = condition['comparsion']
         self._value = condition['value']
+        self._active = False
     
     @property
     def id(self):
         return self._id
+
     @property
     def type(self):
         return self._type
+
     @property
     def comparsion(self):
         return self._comparsion
+
     @property
     def value(self):
         return self._value
     
-    def set_comparsion(self, comparsion):
-        self._comparsion = comparsion
-
-    def set_type(self, type):
-        self._type = type    
+    @id.setter
+    def id(self, new_id):
+        self._id = new_id
     
-    def set_value(self, value):
-        self._value = value
+    @type.setter
+    def type(self, new_type):
+        self._type = new_type
 
-    def compareWith(self, operator:str, x, y) -> bool:
+    @comparsion.setter
+    def comparsion(self, new_comparsion):
+        self._comparsion = new_comparsion    
+    
+    @value.setter
+    def value(self, new_value):
+        self._value = new_value
+
+    def compareWith(self, operator, x, y) -> bool:
+        # print(operator, x, y)
         cases = {
             "equal": lambda a, b: a == b,
-            "bigger": lambda a, b: a > b,
-            "smaller": lambda a, b: a < b,
+            "bigger": lambda a, b: a >= b,
+            "smaller": lambda a, b: a <= b,
         }
 
-        # print('x','y',x, y,type(x),type(y))
         return cases[operator](x, y)
 
     def match_or_not(self, **kwargs):
-       return self.method_mapping(self.type)()
+        # print(self._type, self._comparsion, self._value)
+        return getattr(self, self.type)(**kwargs)
        
     def absolute_time(self, **kwargs):
-        now = time()
-        time_condition = self.datetime_to_timestamp(self.str_to_datetime(self._value))
+        # now = int(time())
+        now = round(time(), 1)
+        time_condition = round(self.datetime_to_timestamp(self.str_to_datetime(self._value)))
 
-        return self.compareWith(self.comparsion, int(now), int(time_condition))
+        return self.compareWith(self.comparsion, now, time_condition)
 
-    def relative_time(self, **kwargs):
-        now = time()
+    def after_project_run(self, **kwargs):
+        project_start_time = kwargs['project_start_time']
+        delay_time = kwargs['delay_time']
+
+        # time_diff = int(time() - project_start_time - delay_time)
+        time_diff = round(time() - project_start_time - delay_time, 1)
+        return self.compareWith(self.comparsion, time_diff, round(int(self._value), 1))
+    
+    def after_task_run(self, **kwargs):
+        # print('relative_time_from_task', kwargs['task_start_time'],kwargs['delay_time'])
+        if len(kwargs['task_start_time']) == 0:
+            return False
+        task = kwargs['self_task']
+        running_task = kwargs['running_task']
+        task_start_time = kwargs['task_start_time'][-1]
+        delay_time = kwargs['delay_time']
+        
+        time_diff = round(time() - task_start_time - delay_time, 1)
+        # print('real_diff', time() - task_start_time - delay_time)
+        # print(task.name, task.uuid, time_diff, round(int(self._value), 1), running_task.name, running_task.uuid)
+        # if round(int(self._value), 1) == 0 and time_diff == 0.1:
+        #     return True
+        if task.uuid != running_task.uuid:
+            return False
+        return self.compareWith('bigger', time_diff, round(int(self._value), 1))
+        # return self.compareWith(self.comparsion, time_diff, round(int(self._value), 1))
     
     def device(self, **kwargs):
         print('device')
     
-    def task_status(self, **kwargs):
-        print('task_status')
+    """ def previous_task_done(self, **kwargs):
+        running_task = kwargs['running_task']
+        if running_task.status == 2 and self._active == False:
+            self._active = True
+            return True
+        return False """
 
-    def method_mapping(self, method_name):
-        methods = {
-        "relative_time": self.relative_time,
-        "absolute_time": self.absolute_time,
-        "device": self.device,
-        "task_status": self.task_status,
-        }
-        return methods[method_name]
+    def previous_task_done(self, **kwargs):
+        running_task = kwargs['running_task']
+        self_task = kwargs['self_task']
+        # if running_task != None and self_task != None:
+        # print('\nprevious_task_done: ', running_task.status, ' ', self._active)
+        if running_task != self_task:
+            if running_task == None:
+                return True
+            if running_task.status == 2 and self._active == False:
+                # self._active = True
+                return True
+        return False
+
+    def until_button_trigger(self, **kwargs):
+        running_task = kwargs['running_task']
+        if running_task != None:
+            if running_task.button_trigger == True:
+                running_task.button_trigger = False
+                return True
+        return False 
+    
+    """ def cycle(self, **kwargs):
+        running_task = kwargs['running_task']
+        self_task = kwargs['self_task']
+        if running_task != self_task:
+            if running_task.status == 2 and self._active == False:
+                # self._active = True
+                return True
+        return False """
 
     def str_to_datetime(self, time_str):
         return datetime.strptime(time_str,'%Y-%m-%dT%H:%M')
 
     def datetime_to_timestamp(self, date):
-        return datetime.timestamp(date)
+        return datetime.timestamp(date)
+
+    def as_json(self):
+        return {
+            'id': self._id,
+            'type': self._type,
+            'comparsion': self._comparsion,
+            'value': self._value,
+            'active': self._active
+        }

python/biopro/project/instruction.py

@@ -0,0 +1,37 @@
+
+class Instruction():
+    def  __init__(self):
+        self._instruction_set = {
+            'set_file_name': {
+                'method': 'update_recording_file_name_info',
+                'arguments': ['file_name']
+            },
+            'set_parent': {
+                'method': 'update_parent_info',
+                'arguments': ['parent']
+            },
+            'set_parameter':{
+                'method': 'set_multi_parameters',
+                'arguments': ['parameter']
+            },
+            'call_instruction': {
+                'method': 'call_instruction',
+                'arguments': ['instruction']
+            },
+        }
+    
+        self._start_instruction = list(map(lambda ins: self._instruction_set[ins] ,['set_file_name', 'set_parent', 'set_parameter', 'call_instruction']))
+        self._stop_instruction = list(map(lambda ins: self._instruction_set[ins] ,['call_instruction']))
+        self._idle_instruction = []
+    
+    @property
+    def start(self) -> list:
+        return self._start_instruction
+    
+    @property
+    def stop(self) -> list:
+        return self._stop_instruction
+
+    @property
+    def idle(self) -> list:
+        return self.idle_instruction

python/biopro/project/project.py

@@ -1,78 +1,417 @@
-from .task import Task
-from .task_manager import TaskManager
 import sys
 import json
 import threading
-import time
+import logging
+
+from time import time, sleep
 from datetime import datetime
 from collections import deque
+from copy import copy
+from uuid import uuid4
+
+from .task import Task
+from .task_manager import TaskManager
+from .instruction import Instruction
 from biopro.device.manager import DeviceManager
 from biopro.text import *
 
+from biopro.db.base import Session
+from biopro.db.collection import Collection
+
+key_list = {
+  'deviceList': 'device',
+}
+
 class Project(threading.Thread):
-  def __init__(self, project, device_manager: DeviceManager, mqttThread = None, name="project"):
+  def __init__(self, project, device_manager: DeviceManager, mqttThread = None, log_verbose = None, name="project"):
     super(Project, self).__init__(name = name)
     self._project = project
     self._device_manager = device_manager
     self._mqtt_thread = mqttThread
-    self._time_interval = 1
+    self._time_interval = 0.1
     self._start_time = None
+    self._end_time = None
 
-    self._task_manager = TaskManager(self._project['taskList'])
+    self._id = None
+    self._uuid = str(uuid4())
+    self._name = None
+    self._desc = None
+    self._device = None
+    self._complete_device = {}
+    self._status = 0
 
-    self._start_time = None
+    self._instruction_set = Instruction()
+    self._stop_flag  = False
+
+    self._task_manager = None
+
+    self._cycle = []
+
+    self._count = 1 #流水號
+
+    self._project_meta_id = -1
+    self._subject = []
+
+    self.log_verbose = log_verbose
+    self._logger = logging.getLogger('project')
+    self._logger.setLevel('DEBUG')
+
+    self._formatter = logging.Formatter('[%(asctime)s.%(msecs)03d] %(message)s', datefmt='%Y-%m-%d %H:%M:%S')
+    self._formatter_with_nothing = logging.Formatter('%(message)s')
+
+    self.setup_project(project)
+    self.setup_device(self._device)
+
+    # create log file handler
+    fh = logging.FileHandler(f'/home/pi/logger/project/{self.uuid}.log', mode="w")
+    fh.setFormatter(self._formatter)
+    self._logger.addHandler(fh)
+
+    default_name = 'admin'
+    default_parent = {"folder": [1]}
+    collection = Collection.find_collection(default_name, default_parent)
+    parent = {"folder": [collection.id]}
+    # create project folder
+    folder_name_duplicate = False
+    if len(self._subject) > 0:
+      folder_name_duplicate = True
+    collection = Collection.create_collection(self.name, parent, folder_name_duplicate)
+    self.setup_collection(collection)
     
+  def setup_project(self, project):
+    for (key, value) in project.items():
+      if key in key_list.keys():
+        key = key_list[key]
+
+      if key == 'task':
+        self._task_manager = TaskManager(project['task'], project['cycle'])
+      elif key == 'uuid':
+        pass
+      else:
+        setattr(self, key, value)
+      
+  def setup_device(self, device_list):
+    for device in device_list:
+      mac_address = device_list[device]['pair']
+      complete_device = self._device_manager.get_device(mac_address)
+      complete_device.occupied_by_project = self._uuid
+      self._complete_device[device] = complete_device
+    
+  def setup_collection(self, collection):
+    self._task_manager.create_collection(collection)
+
+  @property
+  def id(self) -> int:
+    return self._id
+  
+  @id.setter
+  def id(self, new_id):
+    self._id = new_id
+
+  @property
+  def project_meta_id(self) -> int:
+    return self._project_meta_id
+  
+  @project_meta_id.setter
+  def project_meta_id(self, new_project_meta_id):
+    self._project_meta_id = new_project_meta_id
+
+  @property
+  def subject(self) -> object:
+    return self._subject
+  
+  @subject.setter
+  def subject(self, new_subject):
+    self._subject = new_subject
+  
+  @property
+  def uuid(self) -> str:
+    return self._uuid
+  
+  @uuid.setter
+  def uuid(self, new_uuid):
+    self._uuid = new_uuid
+
+  @property
+  def name(self) -> str:
+    return self._name
+  
+  @name.setter
+  def name(self, new_name):
+    self._name = new_name
+  
+  @property
+  def cycle(self) -> list:
+    return self._cycle
+  
+  @cycle.setter
+  def cycle(self, new_cycle):
+    self._cycle = new_cycle
+
   @property
   def desc(self) -> str:
-    return self._project['desc']
+    return self._desc
+  
+  @desc.setter
+  def desc(self, new_desc):
+    self._desc = new_desc
   
   @property
   def status(self) -> str:
-    return self._project['status']
+    return self._status
+  
+  @status.setter
+  def status(self, new_status):
+    self._status = new_status
 
   @property
   def device(self) -> list:
-    return self._project['deviceList']
+    return self._device
+  
+  @device.setter
+  def device(self, new_device):
+    self._device = new_device
+  
+  @property
+  def task_list(self):
+    return self._task_manager.export_task_list
 
   @property
-  def task(self) -> list:
-    return self._task_manager.get()
+  def mqtt_thread(self):
+    return self._mqtt_thread
 
   @property
-  def get_current_task(self) -> str:
-    return self._task_manager.get_current_task()
+  def running_task(self):
+    return self._task_manager.running_task
+
+  def get_device_parameter_set(self, device_address):
+    parameter_set = self._task_manager.running_task.parameter_set
+    return next((x for x in parameter_set if parameter_set[x]['target'] == device_address), None)
+
+  def get_cycle(self, task):
+      for index, _cycle in enumerate(self.cycle):
+        if task.uuid in _cycle['range']:
+          return _cycle
 
   def run(self):
-      self._start_time = time.time()
+      # project status change running (1)
+      self._status = 1
+      # save start time
+      self._start_time = time()
 
-      while True:
-        # current task
-        for task in self._task_manager.get_check_task_list():
-          # [<match_condition>, ...]
-          match_condition_list = task.check_condition('time')
-          # [[<match_action>, ...], ...]
-          match_action_list = task.get_match_action_list(match_condition_list)
-          
-          for action_list in match_action_list:
-            for action in action_list:
-              if action.type == 'start':
-                self._task_manager.set_current_task(task)
-              task.do_action(action)
-              
-          while len(task.instruction_list) > 0:
-            instruction = task.instruction_list.pop(0)
-            if instruction.get('device', None) != None:
-              device = self._device_manager.get_device(self.device[instruction['device']]['connectDevice']['device_address'])
+      # saving & broadcast message
+      self._logger.info('Project ' + self.name + ' start')
+      self.log_verbose('Project ' + self.name + ' start')
+      self.mqtt_thread.broadcast_command('project:' + self._name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+      
+      while not self._stop_flag :
+        # check running task first
+        delay_time = 0
+        check_list = copy(self._task_manager.check_list)
 
-              if device is None:
-                  raise RuntimeError(DEVICE_NOT_FOUND, device)
-                
-              # print(instruction['header'], *instruction['arguments'].values())
-              getattr(device, instruction['header'])(*instruction['arguments'].values()) 
+        for task in check_list:
+          if task != None:
+            now = time()
+
+            match_condition_list = task.check_condition(
+              project_start_time = self._start_time,
+              delay_time = delay_time,
+              running_task= self._task_manager.running_task,
+              previous_task =  self._task_manager.prev_task,
+              self_task = task
+            )
+
+            for condition in match_condition_list:
+              match_action_list = task.get_match_action(condition.id)
+              print('match_action_list', match_action_list, match_action_list)
+              for action in match_action_list:
+                if action.type == 'cycle' and condition.type == 'previous_task_done':
+                  self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+                  self._task_manager.set_running_task(task)
+                  cycle_info = self.get_cycle(task)
+                  if cycle_info['useID'] == False:
+                    self._logger.info(f'---------- Cycle {task.name} Round {cycle_info["count"]} -----------')
+                if action.type == 'cycle' and condition.type == 'until_button_trigger':
+                  self._task_manager.running_task.stop()
+                  self._logger.info(f'---------- Cycle {cycle_info["id"]} Round {cycle_info["count"]} -----------')
+
+                if self._task_manager.running_task != None:
+                  if self._task_manager.running_task.uuid == task.uuid and action.type == 'cycle' and condition.type == 'after_task_run':
+                    self._task_manager.running_task.stop()
+
+                if action.type == 'start':
+                  if task.status != 1:
+                    self._task_manager.set_running_task(task)
+                    self._logger.info(f'Task {str(self._task_manager.running_task.name)} start')
+                    self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+                # elif action.type == 'stop':
+                  # self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+                  # self._count += 1
+                  # if self.check_running_task_not_run() == True:
+                  #   self._task_manager.running_task.stop()
+
+                elif action.type == 'idle':
+                  self._task_manager.running_task.stop()
+                # elif action.type == 'stop':
+                #   self._task_manager.running_task.stop()
+
+                instruction_set = None
+
+                if action.target is not None:
+                  device = self._complete_device[action.target]
+                  if ((action.type == 'start' and device.status == 0) or (action.type == 'stop' and device.status == 1)):
+                    self._logger.info(f'Device {device.mac_address_in_str} {action.type}')
+                    self.log_verbose('Project' + self.name + 'Task ' + task.name + ' match_condition ' + condition.type + ' trigger_action ' + action.type + ' ' + str(action.target))
+                    task_info = task.get_task_info(action)
+                    instruction_set = getattr(self._instruction_set, action.type, None)
+                    
+                    # 檔名修正
+                    # device
+                    task_info['file_name'] += '#' + device.mac_address_in_str[12:].upper()
+                    # 流水號
+                    task_info['file_name'] += '#' + str(self._count)
+
+                    # 添加cycle資訊
+                    if len(self.cycle) > 0:
+                      index = self._task_manager.get_index_by_task(task)
+                      # get list of cycle determine by index of task
+                      filtered = list(filter(lambda info: self._task_manager.get_index_by_uuid(info['range'][0]) < index and self._task_manager.get_index_by_uuid(info['range'][1]) > index, self.cycle))
+                      
+                      if len(filtered) == 0:
+                        pass
+                      elif len(filtered) == 1:
+                        if filtered[0]['useID'] == True:
+                          task_info['file_name'] += '#' + str(filtered[0]['id'])
+                        else:
+                          task_info['file_name'] += '#' + str(filtered[0]['name']) + '-' + str(filtered[0]['count'])
+                      else:
+                        # if multi cycle, then sort by range from task index to cycle start index, then loop concat filename
+                        filtered.sort(key=lambda info: abs(self._task_manager.get_index_by_uuid(info['range'][0]) - index))
+                        for cycle_info in filtered:
+                          if cycle_info['useID'] == True:
+                            task_info['file_name'] += '#' + str(cycle_info['id'])
+                          else:
+                            task_info['file_name'] += '#' + str(cycle_info['name']) + '-' + str(cycle_info['count'])
+                    self.log_verbose('file name ' + task_info['file_name'])
+                    
+                  if instruction_set != None and self.get_device_parameter_set(action.target) != None:
+                    for instruction in instruction_set:
+                      print('instruction 1', device, instruction, datetime.now())
+                      args = list(map(lambda arg: task_info[arg], instruction['arguments']))
+                      target=getattr(device, instruction['method'])(*args)
+                      print('instruction 2', device, instruction, datetime.now())
+                    if (action.type == 'stop'):
+                      if (len(self._subject) > 0):
+                         target=getattr(device, "save_data_to_subject")(self.id, self.project_meta_id, device, self._subject[0])
+                    if action.type == 'start':
+                      self._count += 1
+            
+            delay_time += (time() - now)
+
+        # check task not running then stop
+        if self.check_running_task_not_run() == True:
+          # self._logger.info(f'taskType {self._task_manager.running_task.name} {self._task_manager.running_task.type}')
+          if self._task_manager.running_task.type == '':
+            self._logger.info(f'Task {self._task_manager.running_task.name} stop')
+            self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+          self._task_manager.running_task.stop()
+        
+        # check project done then close project
+        if self.check_project_done() == True:
+          print('project stop at', datetime.now())
+          self.stop()
+        
+        if self._time_interval - delay_time > 0:
+          sleep(self._time_interval - delay_time)
+
+  def pause(self):
+    # TODO
+    pass
 
-        time.sleep(self._time_interval)
   def stop(self):
-    return
+    for device in self._complete_device:
+      self._complete_device[device].occupied_by_project = None
+    self._task_manager.running_task.stop()
+    self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+    self._status = 2
+    self._end_time = time()
+    self._stop_flag  = True
+    self._logger.info('Project ' + self.name + ' stop')
+    self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
 
   def close(self):
-    return
+    for device in self._complete_device:
+      self._complete_device[device].occupied_by_project = None
+    self._status = 2
+    self._end_time = time()
+    self._stop_flag  = True
+    self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+
+  def check_project_done(self):
+    for task in self._task_manager.task_list:
+      # if task never start or still task is running then reject 
+      if task.status == 1 or task.status == -1:
+        return False
+    return True
+  
+  def set_content(self, content):
+    self.running_task.button_trigger = True
+  
+  def set_cycle(self, index, content):
+    # change cycle name
+    for key in content:
+      self.cycle[index][key] = content[key]
+
+    # change task name
+    # self._task_manager.get_task_by_uuid(self.cycle[index]['range'][0]).name = content['name']
+    # self._task_manager.get_task_by_uuid(self.cycle[index]['range'][1]).name = content['name']
+  
+  def check_running_task_not_run(self):
+    # if no running task
+    if self._task_manager.running_task == None:
+      return False
+    
+    # if running is cycle then no need to stop by device
+    if self._task_manager.running_task.type == 'cycle':
+      return False
+    
+    for key in self._task_manager.running_task.action:
+      # print('action key', key, self._task_manager.running_task, self._task_manager.running_task.action[key])
+      if len(self._task_manager.running_task.parameter_set) == 0 and self._task_manager.running_task.action[key]['type'] == 'stop':
+        return False
+      if len(self._task_manager.running_task.parameter_set) == 0 and self._task_manager.running_task.action[key]['type'] == 'idle':
+        return False
+      
+    for device in self._task_manager.running_task.device:
+      if self._complete_device[device].status == 1:
+        return False
+    return True
+  
+  def as_json(self):
+    running_task = None
+    if self._task_manager.running_task is not None:
+      running_task = self._task_manager.running_task.as_json()
+    data = {
+      'id': self._id,
+      'name': self._name,
+      'uuid': self._uuid,
+      'desc': self._desc,
+      'status': self._status,
+      'device': self._device,
+      'task': self.task_list,
+      'running_task': running_task,
+      'cycle': self._cycle,
+      'count': self._count,
+    }
+    return data
+  
+  def info_pass_data_server(self):
+    if self._task_manager.running_task is not None:
+      running_task = self._task_manager.running_task.as_json()
+    data = {
+      'project': self._uuid,
+      'task': running_task,
+      'cycle': self._cycle,
+      'serial_number': self._count,
+    }
+    return data

python/biopro/project/project_manager.py

@@ -9,25 +9,40 @@ def json_stringify(o: Any) -> str:
     return _json_stringify(o, separators=(',', ':'))
 
 class ProjectManager():
-    def __init__(self, device_manager: DeviceManager, mqtt_thread=None) :
+    def __init__(self, device_manager: DeviceManager, mqtt_thread=None, log_verbose = None) :
         self._project_list = []
         self._mqtt_thread =  mqtt_thread
         self._device_manager = device_manager
+        self.log_verbose = log_verbose
     
     def create(self, project):
-      new_project = Project(project, self._device_manager, self._mqtt_thread)
+      new_project = Project(project, self._device_manager, self._mqtt_thread, self.log_verbose)
       self._project_list.append(new_project)
       return new_project
-    
+
     def remove(self, index):
       self._project_list[index].stop()
       del self._project_list[index]
 
-    def get(self):
-      return self._project_list
+    def get(self, project_uuid = None):
+      if project_uuid == None:
+        return self._project_list
+      else:
+        for project in self._project_list:
+          if project.uuid == project_uuid:
+            return project
 
-    def run(self, project):
+    def run_project(self, project):
       project.start()
 
-    def stop(self, project):
-      project.stop()
+    def stop_project(self, project):
+      _project = self.get(project)
+      _project.stop()
+    
+    def set_project(self, project_uuid, content):
+      _project = self.get(project_uuid)
+      _project.set_content(content)
+    
+    def set_project_cycle(self, project_uuid, index, content):
+      _project = self.get(project_uuid)
+      _project.set_cycle(index, content)

python/biopro/project/task.py

@@ -1,110 +1,238 @@
+from typing import List
 from .condition import Condition
 from .action import Action
 from time import time
+from datetime import datetime
+
+key_list = {
+  'deviceList': 'device',
+  'parameterSet': 'parameter_set'
+}
 
 class Task:
   def __init__(self, task):
-    self._task = task
-
-    self._condition_list = []
-    self._action_list = []
-
-    self._start_time = time()
-    self._idle_time = []
-    self._period = None
-    self._next_time = None
-    self._last_time = None
+    self._id = None
+    self._uuid = None
+    self._type = None
+    self._name = None
+    self._parent = None
+    self._cycle = None
+    self._cycle_count = 0
+    self._cycle_next = None
+    self._cycle_next_uuid = None
+    self._device = None
+    self._event = None
+    self._trigger = None
+    self._parameter_set = None
+    self._condition = None
+    self._action = None
+    # -1: init 0: start(idle), 1: run, 2: close(idle)
+    self._status = 0
+    self._next = None
 
+    # action & condition info
+    self._condition_list: List[Condition] = []
+    self._action_list: List[Action] = []
     self._instruction_list = []
+    self._record_list = []
 
-    self.setup()
+    # time info
+    self._start_time = []
+    self._idle_time = []
+    self._end_time = []
+    self._period = None
+
+    # trigger info
+    self._button_trigger = False
+
+    self.load_task(task)
   
-  def setup(self) -> None:
-    # add condition
-    for key, condition in self._task['condition'].items():
-      new_condition = Condition(key, condition)
-      self._condition_list.append(new_condition)
+  def load_task(self, task) -> None:
+    # update task attribute
+    for key, value in task.items():
+      if key in key_list.keys():
+        key = key_list[key]
+      if key == 'condition':
+        self.update_condition_list(value)
+      if key == 'action':
+        self.update_action_list(value)
+      # print(key, value)
+      setattr(self, key, value)
     
-    # add action
-    for key, action in self._task['action'].items():
-      new_action = Action(self, key, action)
-      self._action_list.append(new_action)
+  def update_condition_list(self, condition_dict):
+    self._condition_list.clear()
+    for key, condition in condition_dict.items():
+      self._condition_list.append(Condition(key, condition))
+    
+  def update_action_list(self, action_dict):
+    self._action_list.clear()
+    for key, action in action_dict.items():
+      self._action_list.append(Action(key, action))
 
   @property
   def id(self) -> str:
-    return self._task['id']
+    return self._id
   
-  @property
-  def file_name(self):
-    return self._task['name']
-
-  @property
-  def parent(self):
-    return self._task.get('parent', {"folder": [2]})
-
-  @property
-  def instruction_list(self):
-    return self._instruction_list
-
-  @property
-  def cycle(self) -> int:
-    return self._task['cycle']
-
-  @property
-  def order(self) -> int:
-    return self._task['order']
-
-  @property
-  def max_cycle(self) -> int:
-    return self._task['max_cycle']
-  
-  @property
-  def devices(self) -> dict:
-    return self._task['devices']
-
-  @property
-  def devices_id(self) -> list:
-    return [device_id for device_id in self.devices]
-  
-  @property
-  def events(self) -> list:
-    return self._task['events']
-
-  @property
-  def triggers(self) -> list:
-    return self._task['triggers']
-  
-  @property
-  def parameter_set(self) -> list:
-    return self._task['parameterSet']
-  
-  @property
-  def instructions(self) -> list:
-    return self._task['instructions']
-
-  @property
-  def conditions(self) -> list:
-    return self._task['conditions']
-  
-  @property
-  def actions(self) -> list:
-    return self._task['actions']
-
-  @property
-  def condition_list(self) -> list:
-    return self._condition_list
-
-  @property
-  def status(self) -> str:
-    return self._task['status']
+  @id.setter
+  def id(self, new_id):
+    self._id = new_id
   
   @property
   def uuid(self) -> str:
-    return self._task['uuid']
+    return self._uuid
+  
+  @uuid.setter
+  def uuid(self, new_uuid):
+    self._uuid = new_uuid
+
+  @property
+  def type(self):
+    return self._type
+  
+  @type.setter
+  def type(self, new_type):
+    self._type = new_type
+  
+  @property
+  def name(self):
+    return self._name
+  
+  @name.setter
+  def name(self, new_name):
+    self._name = new_name
+
+  @property
+  def parent(self):
+    if self._parent == None:
+      return  {"folder": [2]}
+    return self._parent
+  
+  @parent.setter
+  def parent(self, new_parent):
+    self._parent = new_parent
+
+  @property
+  def cycle(self) -> int:
+    return self._cycle
+  
+  @cycle.setter
+  def cycle(self, new_cycle):
+    self._cycle = new_cycle
+
+  # TODO: not sure needed?
+  @property
+  def cycle_count(self) -> int:
+    return self._cycle_count
+  
+  @cycle_count.setter
+  def cycle_count(self, new_cycle_count):
+    self._cycle_count = new_cycle_count
+    
+  @property
+  def cycle_next(self) -> str:
+    return self._cycle_next
+  
+  @cycle_next.setter
+  def cycle_next(self, new_cycle_next):
+    self._cycle_next = new_cycle_next
+
+  @property
+  def cycle_next_uuid(self) -> str:
+    return self._cycle_next_uuid
+  
+  @cycle_next_uuid.setter
+  def cycle_next_uuid(self, new_cycle_next_uuid):
+    self._cycle_next_uuid = new_cycle_next_uuid
+  
+  @property
+  def device(self) -> dict:
+    return self._device
+  
+  @device.setter
+  def device(self, new_device):
+    self._device = new_device
+  
+  @property
+  def event(self) -> list:
+    return self._event
+  
+  @event.setter
+  def event(self, new_event):
+    self._event = new_event
+
+  @property
+  def trigger(self) -> list:
+    return self._trigger
+  
+  @trigger.setter
+  def trigger(self, new_trigger):
+    self._trigger = new_trigger
+  
+  @property
+  def parameter_set(self) -> list:
+    return self._parameter_set
+  
+  @parameter_set.setter
+  def parameter_set(self, new_parameter_set):
+    self._parameter_set = new_parameter_set
+
+  @property
+  def condition(self) -> list:
+    return self._condition
+  
+  @condition.setter
+  def condition(self, new_condition):
+    self._condition = new_condition
+  
+  @property
+  def action(self) -> list:
+    return self._action
+  
+  @action.setter
+  def action(self, new_action):
+    self._action = new_action
+
+  @property
+  def status(self) -> str:
+    return self._status
+  
+  @status.setter
+  def status(self, new_status):
+    self._status = new_status
   
   @property
   def next(self) -> str:
-    return self._task['next']
+    return self._next
+  
+  @next.setter
+  def next(self, new_next):
+    self._next = new_next
+  
+  @property
+  def instruction_list(self) -> List:
+    return self._instruction_list
+  
+  @property
+  def start_time(self) -> List:
+    return self._start_time
+  
+  @property
+  def end_time(self) -> List:
+    return self._end_time
+  
+  @property
+  def button_trigger(self) -> List:
+    return self._button_trigger
+  
+  @button_trigger.setter
+  def button_trigger(self, button_trigger):
+    self._button_trigger = button_trigger
+  
+  def new_start_time(self):
+    self._start_time.append(time())
+  
+  def new_end_time(self):
+    self._end_time.append(time())
     
   def get_parameter_set_by_device(self, device):
      return [parameter_set for parameter_set in self.parameter_set.values() if device == parameter_set['target']]
@@ -121,48 +249,64 @@ class Task:
     return '|'.join(name_list) if name_or_value == 'name' else '|'.join(value_list)
   
   def run(self):
-    self._status = 'running'
-    self._start_time = time()
-
-  def pause(self):
-    self._status = 'pause'
-
-  def set_cycle(self, cycle):
-    self._cycle = cycle
-
-  def set_status(self, status):
-    self._status = status
+    print(self._name, 'run at', datetime.now())
+    self._status = 1
+    self._start_time.append(time())
   
   def start(self):
-    self.set_status('running')
+    self.status = 1
   
   def stop(self):
-    if self.status == 'running':
-      self.do_action('stop')
-    self.set_status('idle')
-
-  def done(self):
-    self.set_status('done')
+    self.status = 2
   
-  def end(self):
-    self.set_status('end')
+  def reset(self):
+    self.status = -1
+    # self.status = 0
 
   def get_match_action_list(self, match_condition_list):
     return map(lambda condition: [x for x in self._action_list if condition.id in x.get_condition_list()], match_condition_list)
+  
+  def get_match_action(self, condition_id):
+    return [action for action in self._action_list if condition_id in action.condition]
 
   def do_action(self, action): 
-    # # match_action = [x for x in self._action_list if condition_id in x.get_condition_list()]
-
-    # for action in match_action:
     for instruction in action.get_instruction_list():
       self._instruction_list.append(instruction)
 
-  def status_mapping(self, status):
-    statuses = {
-      "start": self.task_start,
-      "done": self.task_done,
-    }
-    return statuses[status]
+  def check_condition(self, **kwargs):
+    kwargs['task_start_time'] = self._start_time
+    return [condition for condition in self._condition_list if  condition.match_or_not(**kwargs)]
+  
+  def get_task_info(self, action):
+    _type = action.type
+    if _type == 'stop':
+      _type = 'interrupt'
 
-  def check_condition(self, type):
-    return [condition for condition in self._condition_list if  condition.match_or_not()]
+    return {
+      'device': action.target,
+      'parameter': self.get_parameter_set_by_device(action.target),
+      'file_name': self._name,
+      'parent': self.parent,
+      'instruction': _type
+    }
+  
+  def as_json(self):
+    return {
+      'id': self.id,
+      'name': self.name,
+      'parent': self.parent,
+      'type': self.type,
+      'uuid': self.uuid,  
+      'cycle': self.cycle,
+      'cycle_count': self.cycle_count,
+      'cycle_next': self.cycle_next,
+      'cycle_next_uuid': self.cycle_next_uuid,
+      'device': self.device,
+      'event': self.event,
+      'trigger': self.trigger,
+      'parameter_set': self.parameter_set,
+      'condition': self.condition,
+      'action': self.action,
+      'status': self.status,
+      'next': self.next,
+    }

python/biopro/project/task_manager.py

@@ -1,9 +1,11 @@
 from json import loads as json_parse, dumps as _json_stringify
-from typing import Dict, Optional, Any
+from socket import if_nametoindex
+from typing import Dict, List, Optional, Any
 from xml.dom.expatbuilder import parseString
 import paho.mqtt.client as mqtt
 from biopro.text import *
 from .task import Task
+from biopro.db.collection import Collection
 
 _RUNTIME_COMPILE = False
 
@@ -11,46 +13,169 @@ def json_stringify(o: Any) -> str:
     return _json_stringify(o, separators=(',', ':'))
 
 class TaskManager():
-    def __init__(self, task_list):
-      self._current_task = None
+    def __init__(self, task_list, cycle_list):
       self._task_list = []
-      self._need_to_check_task_list = []
+      self._next_task = []
+      self._prev_task = None
+      self._running_task = None
+      self._cycle_list = cycle_list
+      
+      self.load_task_list(task_list)
 
+      # self.set_running_task(self._task_list[0])
+      # self._running_task.run()
+      self._next_task.append(self._task_list[0])
+    
+    @property
+    def task_list(self):
+      return self._task_list
+
+    @property
+    def export_task_list(self):
+      return [d.as_json() for d in self._task_list]
+
+    @property
+    def prev_task(self):
+      return self._prev_task
+    
+    @property
+    def running_task(self):
+      return self._running_task
+    
+    @property
+    def next_task(self):
+      return self._next_task
+
+    def get_task_by_index(self, index):
+      return self._task_list[index]
+
+    def get_task_by_uuid(self, uuid):
+      return next((x for x in self.task_list if x.uuid == uuid), None)
+    
+    def get_index_by_task(self, task):
+      return next((i for i, x in enumerate(self.task_list) if x.uuid == task.uuid), None)
+    
+    def get_index_by_uuid(self, uuid):
+      return next((i for i, x in enumerate(self.task_list) if x.uuid == uuid), None)
+    
+    def check_task_is_cycle_start(self, task):
+      for index, cycle in enumerate(self._cycle_list):
+        if cycle['range'][0] == task.uuid:
+          return index
+
+    def check_task_is_cycle_end(self, task):
+      for index, cycle in enumerate(self._cycle_list):
+        if cycle['range'][1] == task.uuid:
+          return index
+
+    def check_task_in_cycle(self, task_index):
+      for index, cycle in enumerate(self._cycle_list):
+        if self.get_index_by_uuid(cycle['range'][0]) <= task_index:
+          if self.get_index_by_uuid(cycle['range'][1]) >= task_index:
+            return True
+      return False
+
+    @property
+    def check_list(self):
+      return [self._running_task, *self._next_task]
+    
+    @property
+    def check_list(self):
+      return [self._running_task, *self._next_task]
+    
+    def load_task_list(self, task_list):
       for task in task_list:
         task = Task(task) 
         self._task_list.append(task)
-      
-      self.set_current_task(self._task_list[0])
-      self._current_task.run()
     
-    def remove(self, index):
-      pass
+    # original version
+    """ def set_running_task(self, task):
+      try:
+        # if there is task running & same task active ,then reject
+        if self._running_task != None and self._running_task.uuid == task.uuid:
+          return False
+
+        # save running task
+        self._prev_task = self._running_task
+        # clear next task list
+        self._next_task.clear()
+        self._running_task = task
+        self._running_task.run()
+
+        if self._prev_task != None:
+          # if previous task is still running, then need to close
+          if self._prev_task.status == 1:
+            self._prev_task.stop()
+          print('prev', 'run', self._prev_task.name, self._running_task.name)
+
+        for task_uuid in self._running_task.next:
+          _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
+          if _task != None:
+            self._next_task.append(_task)
+      except RuntimeError as e:
+        print(e) """
+      
+    def set_running_task(self, task):
+      try:
+        # if there is task running & same task active ,then reject
+        if self._running_task != None and self._running_task.uuid == task.uuid:
+          return False
+
+        # save task
+        self._prev_task = self._running_task
+        # clear next task list
+        self._next_task.clear()
+        # set task to running_task
+        self._running_task = task
+        self._running_task.run()
+
+        # if previous task is still running, then need to close
+        if self._prev_task != None:
+          if self._prev_task.status == 1:
+            self._prev_task.stop()
+        # if reach cycle end, count < max, then go to cycle start
+        cycle_start_index = self.check_task_is_cycle_start(task)
+        cycle_index = self.check_task_is_cycle_end(task)
+        if cycle_index is None:
+          # print('next', self._running_task.name, self._running_task.next)
+          for task_uuid in self._running_task.next:
+            _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
+            if _task != None:
+              _task.reset()
+              self._next_task.append(_task)
+          # print('self._next_task', self._next_task)
+        else:
+          # print('cycle', self._cycle_list[cycle_index])
+          cycle = self._cycle_list[cycle_index]
+          if int(cycle['count']) < int(cycle['max']):
+            self._next_task.append(self.get_task_by_uuid(cycle['range'][0]))
+            # cycle['count'] += 1
+          else:
+            for task_uuid in self._running_task.next:
+              _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
+              if _task != None:
+                _task.reset()
+                self._next_task.append(_task)
+            # cycle['count'] = 1
+
+        if cycle_start_index != None:
+            cycle = self._cycle_list[cycle_start_index]
+            if int(cycle['count']) < int(cycle['max']):
+              cycle['count'] += 1
+            else:
+              cycle['count'] = 1
+
+      except RuntimeError as e:
+        print(e)
 
     def get_task(self, task_id):
       return self._task_list[task_id]
-
-    def get_check_task_list(self):
-      return self._need_to_check_task_list
-
-    def get_current_task(self) -> Task:
-      return self._current_task
-
-    def get_next_task(self):
-      return  self._current_task.next
-
-    def set_current_task(self, task):
-      try:
-        if self._current_task != None and self._current_task.id != task.id:
-          self._current_task.stop()
-
-        self._current_task = task
-        self._need_to_check_task_list = []
-        # append current task
-        self._need_to_check_task_list.append(self._current_task)
-
-        # append next task
-        for task_uuid in self._current_task.next:
-          task = next((task for task in self._task_list if task.uuid == task_uuid), None)
-          self._need_to_check_task_list.append(task)
-      except Exception as e:
-        print(e)
+  
+    def create_collection(self, parent):
+      for index, task in enumerate(self._task_list):
+        if self.check_task_in_cycle(index) == True:
+          if task.type == '':
+            collection = Collection.create_collection(task.name, {"folder": [parent.id]}, False)
+            task.parent = {"folder": [collection.id]}
+        else:
+          task.parent = {"folder": [parent.id]}