[update] check memory board version

.gitignore

@@ -1,10 +1,7 @@
 .DS_Store
 *.cpython-37.opt-2.pyc
-*.cpython-39-arm-linux-gnueabihf.so
-*.
 *.pyc
 */__pycache__
 /.vscode
 /media
 python/biopro/sever/_identify.py
-*.log

README.md

@@ -4,7 +4,7 @@ New goal on pi4 without kotlin and django, and with only one dataserver.
 # Installation
 ### Get Raspbrain into SD card
 
-###### Download Raspbian Bullseye Lite
+###### Download Raspbian Buster Lite
 
 >https://www.raspberrypi.org/downloads/raspberry-pi-os/
 
@@ -14,7 +14,7 @@ New goal on pi4 without kotlin and django, and with only one dataserver.
 lsblk
 
 # copy data to sd card
-sudo dd bs=4M if=yyyy-mm-dd-raspios-bullseye-armhf-lite.img of=/dev/sdX conv=fsync status=progress
+sudo dd bs=4M if=yyyy-mm-dd-raspbian-buster.img of=/dev/sdX conv=fsync status=progress
 
 # enable ssh on first boot
 add ssh.txt in boot folder
@@ -77,26 +77,19 @@ add ssh.txt in boot folder
 
 
 ###### Install dependencies
-    sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql npm
-    sudo apt-get install libatlas-base-dev
-    sudo apt-get install python3-numpy
-
-###### wiringpi conflict
-need to install wiringpi:  https://github.com/WiringPi/WiringPi
-install instructions:  https://github.com/WiringPi/WiringPi/blob/master/INSTALL
+    sudo apt-get install vim git wiringpi build-essential libi2c-dev i2c-tools python-dev libffi-dev python3-pip postgresql
 
 ### Setup project
-###### Clone data server project
+###### Clone project
 ```
 cd ~
-git clone https://gitlab.com/wisetop/controller/wisetopdataserver.git
+git clone https://gitlab.com/bioproscientific/bioprorelife.git
 ```
 
 ###### Install python dependencies
 ```
- cd ~/wisetopdataserver
+cd ~/bioprorelife
 pip3 install -r requirements.txt
-pip3 install SQLAlchemy
 ```
 ##### Packages version
 ```
@@ -119,14 +112,14 @@ psycopg2                      2.8.5
 
 ###### Build C extension
 ```
-cd ~/wisetopdataserver/python/biopro/ext/
+cd ~/bioprorelife/python/biopro/ext/
 rm -rf *.so build
 python3 setup.py build_ext --inplace
 ```
 
 ###### Check setup-uart file
 ```
-cd ~/wisetopdataserver/
+cd ~/bioprorelife
 sudo vim ./run-setup-uart.sh
 ```
 ##### Modify the code as following
@@ -156,72 +149,44 @@ sudo raspi-config
 reboot
 ```
 
-###### Set pi password
-```
-cd ~
-passwd
-Current password:raspberry
-New password:5k6zj454778225
-Retype new password:5k6zj454778225
-```
-
 ###### Auto run program when device start
 ```
 sudo vim /etc/rc.local
 ```
-###### add the code following as:
+add the code following as:
 ```
-sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.data_server.out &
-#sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.wisetop_data_$now.out &
+sudo -H -u pi nohup /home/pi/bioprorelife/run-data-server.sh > /home/pi/.data_server.out &
 ```
-##### /etc/rc.local
-```
-_IP=$(hostname -I) || true
-if [ "$_IP" ]; then
-  printf "My IP address is %s\n" "$_IP"
-fi
 
-now=$(date +'%F_%T')
-
-sudo nohup systemctl restart apache2
-sudo nohup systemctl restart mosquitto
-
-nohup node /home/pi/wisetopapiserver/dist/app.js > /home/pi/.api_server.out &
-
-sleep 5
-
-sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.data_server.out &
-#sudo -H -u pi nohup /home/pi/wisetopdataserver/run-data-server.sh > /home/pi/.wisetop_data_$now.out &
-
-exit 0
-```
 ### MQTT broker install
 
-###### 1.Install mosquitto
+1. Install mosquitto
+```
 sudo apt-get install mosquitto mosquitto-clients
+```
 
-
-###### 2.Enable Remote Access
+2. Enable Remote Access
+```
 sudo vim /etc/mosquitto/conf.d/default.conf
-
+```
 add the code following as:
 ```
 listener 1883
 protocol mqtt
 listener 8083
 protocol websockets
-allow_anonymous true
 ```
-###### 3.restart mqtt broker
+restart mqtt broker
+```
 sudo systemctl restart mosquitto
+```
 
-###### 4.Robust MQTT
+3. Robust MQTT
 create mosquitto_restart.sh
-
+```
 cd ~
 sudo vim mosquitto_restart.sh
-
-
+```
 add the code following as:
 ```
 if [ "`ps -aux | grep /usr/sbin/mosquitto | wc -l`" == "1" ]
@@ -235,155 +200,25 @@ fi
 echo "$SERVICE is currently running" >> /home/ubuntu/cron.log
 exit 0
 ```
-###### 5.add mosquitto_restart.sh to root routing
+add mosquitto_restart.sh to root routing
+```
 sudo chmod +x mosquitto_restart.sh
 sudo  -i
 crontab -e
-
+```
 add the code following as:
 ```
 */5 * * * * /home/pi/mosquitto_restart.sh
 ```
-###### 6.Auto run MQTT broker when when pi-start
+3. Auto run MQTT broker when when pi-start
+```
 sudo vim /etc/rc.local
-
+```
 add the code following as:
 ```
 sudo nohup systemctl restart mosquitto
 ```
 
-### Setting up a Routed Wireless Access Point
-###### 1.Install AP and Management Software
-sudo apt install hostapd
-sudo systemctl unmask hostapd
-sudo systemctl enable hostapd
-sudo apt install dnsmasq
-sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
-
-###### 2.Set up the Network Router
-sudo nano /etc/dhcpcd.conf
-```
-interface wlan0
-    static ip_address=192.168.2.1/24
-    nohook wpa_supplicant
-```
-sudo nano /etc/sysctl.d/routed-ap.conf
-```
-# Enable IPv4 routing
-net.ipv4.ip_forward=1
-```
-
-sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
-sudo netfilter-persistent save
-sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
-
-
-sudo nano /etc/dnsmasq.conf
-
-```
-interface=wlan0 # Listening interface
-dhcp-range=192.168.2.2,192.168.2.255,255.255.255.0,24h
-                # Pool of IP addresses served via DHCP
-domain=wlan     # Local wireless DNS domain
-address=/gw.wlan/192.168.2.1
-                # Alias for this router
-```
-###### 3.Ensure Wireless Operation
-sudo rfkill unblock wlan
-
-###### 4.Configure the AP Software
-sudo nano /etc/hostapd/hostapd.conf
-
-```
-country_code=TW
-interface=wlan0
-ssid=WTP_NONE
-hw_mode=g
-channel=7
-macaddr_acl=0
-auth_algs=1
-ignore_broadcast_ssid=0
-wpa=2
-wpa_passphrase=00000000
-wpa_key_mgmt=WPA-PSK
-wpa_pairwise=TKIP
-rsn_pairwise=CCMP
-
-# 802.11n support
-ieee80211n=1
-# make raspberry pi dongle fast
-wme_enabled=1
-# ht_capab: HT capabilities, enable 40MHz
-ht_capab=[HT40+][SHORT-GI-40]
-```
-###### 5.Running the new Wireless AP
-sudo systemctl reboot
-
-### Install Apache2
-sudo apt install apache2
-
-### Deploy web site
-sudo vim /etc/apache2/sites-available/000-default.conf
-```
-<VirtualHost *:8080> #80------>8080
-        # The ServerName directive sets the request scheme, hostname and port that
-        # the server uses to identify itself. This is used when creating
-        # redirection URLs. In the context of virtual hosts, the ServerName
-        # specifies what hostname must appear in the request's Host: header to
-        # match this virtual host. For the default virtual host (this file) this
-        # value is not decisive as it is used as a last resort host regardless.
-        # However, you must set it for any further virtual host explicitly.
-        #ServerName www.example.com
-
-        ServerAdmin webmaster@localhost
-        DocumentRoot /var/www/html
-
-        # Available loglevels: trace8, ..., trace1, debug, info, notice, warn,
-        # error, crit, alert, emerg.
-        # It is also possible to configure the loglevel for particular
-        # modules, e.g.
-        #LogLevel info ssl:warn
-
-        ErrorLog ${APACHE_LOG_DIR}/error.log
-        CustomLog ${APACHE_LOG_DIR}/access.log combined
-
-        # For most configuration files from conf-available/, which are
-        # enabled or disabled at a global level, it is possible to
-        # include a line for only one particular virtual host. For example the
-        # following line enables the CGI configuration for this host only
-        # after it has been globally disabled with "a2disconf".
-        #Include conf-available/serve-cgi-bin.conf
-</VirtualHost>
-
-<VirtualHost *:80>
-    ServerAdmin bioprovue@localhost
-    DocumentRoot /var/www/bioprovuebuild
-</VirtualHost>
-```
-
+### Setup routed wireless access point
 ##### raspberry website document:
 > https://www.raspberrypi.org/documentation/configuration/wireless/access-point-routed.md
-
-# ChangeLog
-[2022.12.28]
-change meta_project_info to project_metas
-change project_report to project_reports
-alter table project_meta column cycle type string to jsonb
-
-[2022.11.16]
-add python package SQLAlchemy
-add new column project(int4) in postgresSQL table recording_meta_datas
-add new postgresSQL table project_report
-add new postgresSQL table meta_project_info
-
-[2022.10.18]
-socektTimeout from 1s -> 5s
-socketListen from 3 -> 20
-
-[2022.09.30]
-add new column cycle(jsonb) in postgresSQL table projects
-
-[2022.9.28]
-add python package numpy
-
-

python/biopro/api/controller.py

@@ -18,10 +18,9 @@ class ControllerAPI():
     @staticmethod
     def getByMac(mac_address):
         try:
-            if mac_address != None:
-                ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
-                if ret.status_code == 200:
-                    return ret.json()
+            ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
+            if ret.status_code == 200:
+                return ret.json()
         except (requests.exceptions.ConnectionError, json.decoder.JSONDecodeError) as e:
             print('get controller fail', e)
         return []

python/biopro/controller.py

@@ -1576,24 +1576,7 @@ class ControlAPI(metaclass=Router):
         should handle this exit code and re-run server process.
         """
         raise NotImplementedError()
-    
-    def run_project(self, project) -> bool:
-        raise NotImplementedError()
 
-    def get_running_project(self) -> bool:
-        raise NotImplementedError()
-    
-    def stop_project(self, project) -> bool:
-        raise NotImplementedError()
-    
-    def set_project(self, project, content) -> bool:
-        raise NotImplementedError()
-    
-    def set_project_cycle(self, project, index, content) -> bool:
-        raise NotImplementedError()
-    
-    def show_device_data(self, device) -> bool:
-        raise NotImplementedError()
 
 # noinspection PyAbstractClass
 class ControlClient(SocketClient, ControlAPI, metaclass=SocketClientMacro(ControlAPI)):

python/biopro/data.py

@@ -87,8 +87,7 @@ class DataAPI(metaclass=abc.ABCMeta):
     def update_device_configuration(self,
                                     device: Union[int, Device],
                                     meta_file: Union[str, Path, RecordingMetaFile],
-                                    data_format: Union[AnyStr, DataDecodeFormat],
-                                    project_info: str):
+                                    data_format: Union[AnyStr, DataDecodeFormat]):
         """set device configuration.
 
         :param device: device ID
@@ -131,14 +130,6 @@ class DataAPI(metaclass=abc.ABCMeta):
     def hardware_test(self) -> JSON_OBJECT:
         """"""
         pass
-    
-    @abc.abstractmethod
-    def show_data(self, device: Union[int, Device]):
-        """show device data
-
-        :param device: device ID
-        """
-        pass
 
 
 # noinspection PyAbstractClass
@@ -155,8 +146,7 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
     def update_device_configuration(self,
                                     device: Union[int, Device],
                                     meta_file: Union[str, Path, RecordingMetaFile],
-                                    data_format: Union[AnyStr, DataDecodeFormat],
-                                    project_info: str):
+                                    data_format: Union[AnyStr, DataDecodeFormat]):
 
         # meta file
         if isinstance(meta_file, str):
@@ -188,7 +178,7 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
             raise TypeError('not a data decode format : ' + data_format.__class__.__name__)
 
         # send
-        self.send_command('update_device_configuration', device, meta_file, data_format, project_info)
+        self.send_command('update_device_configuration', device, meta_file, data_format)
 
     def is_sync(self, device: Union[None, int, Device] = None) -> bool:
         if isinstance(device, Device):
@@ -201,9 +191,6 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
 
     def stop_sync(self, *device: Union[int, Device]):
         self.send_command('stop_sync', *self._to_device_id(*device))
-    
-    def show_data(self, device: int):
-        self.send_command('show_data', device)
 
     @staticmethod
     def _to_device_id(*device: Union[int, Device]) -> Tuple[int, ...]:

python/biopro/db/base.py

@@ -1,10 +0,0 @@
-from sqlalchemy import create_engine
-# from sqlalchemy.ext.declarative import declarative_base
-from sqlalchemy.orm import sessionmaker, declarative_base
-
-SQLALCHEMY_DATABASE_URL = "postgresql://biopro:BioProControlBox@127.0.0.1:5432/postgres"
-
-engine = create_engine(SQLALCHEMY_DATABASE_URL)
-Session = sessionmaker(bind=engine)
-
-Base = declarative_base()

python/biopro/db/collection.py

@@ -1,75 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
-from sqlalchemy.dialects.postgresql import JSONB
-from biopro.db.base import Session
-
-from .base import Base
-
-class Collection(Base):
-    __tablename__ = "collections"
-
-    id = Column(Integer, primary_key=True)
-    name = Column(String(255))
-    parent = Column(JSONB)
-    controller_id = Column(Integer)
-    type = Column(String(255))
-    description = Column(String(255))
-    deleted = Column(Boolean)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    @classmethod
-    def create_collection(cls, collection_name, parent, duplicate=False):
-        with Session() as session:
-            name = cls.check_name_duplicate(collection_name, parent, 0, duplicate=duplicate)
-            if name == None:
-                return session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
-            else:
-                collection = Collection(
-                    name = name,
-                    parent = parent,
-                    type= "folder",
-                )
-                session.add(collection)
-                session.commit()
-                session.refresh(collection)
-                return collection
-
-    @classmethod
-    def check_name_duplicate(cls, collection_name, parent, n, _session = None, duplicate=False):
-        if _session == None:
-            with Session() as session:
-                result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
-                if result is None:
-                    return cls.generate_name(collection_name, n)
-                else:
-                    if duplicate == True:
-                        return None
-                    else:
-                        new_num = n + 1
-                        # new_name =  f"{collection_name}({new_num})" 
-                        return cls.check_name_duplicate(collection_name, parent, new_num, session)
-        else:
-            result = _session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
-            if result is None:
-                return cls.generate_name(collection_name, n)
-            else:
-                new_num = n + 1
-                # new_name =  f"{collection_name}({new_num})" 
-                return cls.check_name_duplicate(collection_name, parent, new_num, _session)
-
-    @classmethod
-    def generate_name(cls, collection_name, n):
-        if n==0:
-            return collection_name
-        else:
-            return f"{collection_name}({n})" 
-    
-    @classmethod
-    def find_collection(cls, collection_name, parent):
-        with Session() as session:
-            result = session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
-            return result
-    
-        

python/biopro/db/device.py

@@ -1,51 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric, Float, BINARY, LargeBinary
-from sqlalchemy.dialects.postgresql import JSONB
-
-from .base import Base, Session
-
-class Device(Base):
-    __tablename__ = "devices"
-
-    id = Column(Integer, primary_key=True)
-    name = Column(String(255))
-    mac_address = Column(String(255))
-    serial_number = Column(String(255))
-    configuration = Column(JSONB)
-    library = Column(String(255))
-    library_version = Column(String(255))
-    device_version = Column(String(255))
-    type = Column(String(255))
-    battery = Column(Integer)
-    temperature = Column(Float)
-    auto_connect = Column(Boolean)
-    connect_priority = Column(Integer)
-    connect_time = Column(BigInteger)
-    parameter_set = Column(JSONB)
-    running = Column(Boolean)
-    calibration = Column(LargeBinary)
-    calibration_version = Column(Integer, default=-1)
-    user_auth = Column(JSONB)
-    deleted = Column(Boolean)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    @classmethod
-    def update_device(cls, device, options):
-        with Session() as session:
-            result = session.query(Device).filter(Device.mac_address == device['mac_address']).first()
-            for key, value in options.items():
-                setattr(result, key, value)
-            session.commit()
-    
-    @classmethod
-    def get_device(cls, device):
-        with Session() as session:
-            result = session.query(Device).filter(Device.mac_address == device['mac_address']).first()
-            return result
-            
-
-
-    # def __repr__(self):
-    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/meta.py

@@ -1,24 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
-from sqlalchemy.dialects.postgresql import JSONB
-
-from .base import Base, Session
-
-class RecordingDataMeta(Base):
-    __tablename__ = "recording_data_metas"
-
-    id = Column(Integer, primary_key=True)
-    path = Column(String(255))
-    name = Column(String(255))
-    parent = Column(JSONB)
-    size = Column(String(255))
-    time_duration = (String(255))
-    raw_data = Column(JSONB)
-    project = Column(Integer)
-    deleted = Column(Boolean, default = False)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    # def __repr__(self):
-    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project.py

@@ -1,24 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
-from sqlalchemy.dialects.postgresql import JSONB
-
-from .base import Base
-
-class Project(Base):
-    __tablename__ = "project"
-
-    id = Column(Integer, primary_key=True)
-    name = Column(String)
-    desc = Column(String)
-    task = Column(JSONB)
-    cycle = Column(JSONB)
-    device = Column(JSONB)
-    uuid = Column(String(36))
-    user_auth = Column(JSONB)
-    deleted = Column(Boolean, default = False)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    # def __repr__(self):
-    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project_meta.py

@@ -1,29 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
-from sqlalchemy.dialects.postgresql import JSONB
-
-from .base import Base, Session
-
-class MetaProjectInfo(Base):
-    __tablename__ = "project_metas"
-
-    id = Column(Integer, primary_key=True)
-    project = Column(String(36))
-    cycle = Column(JSONB)
-    task = Column(JSONB)
-    serial_number = Column(Integer)
-    deleted = Column(Boolean, default = False)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    @classmethod
-    def create_project_meta(cls, project):
-        with Session() as session:
-            project_meta = MetaProjectInfo(project = project['project'], cycle= project['cycle'], task=project['task'], serial_number=int(project['serial_number']))
-            session.add(project_meta)
-            session.commit()
-            return project_meta.id
-
-    # def __repr__(self):
-    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project_report.py

@@ -1,24 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
-from sqlalchemy.dialects.postgresql import JSONB
-
-from .base import Base
-
-class ProjectReport(Base):
-    __tablename__ = "project_reports"
-
-    id = Column(Integer, primary_key=True)
-    name = Column(String)
-    desc = Column(String)
-    task = Column(JSONB)
-    cycle = Column(JSONB)
-    device = Column(JSONB)
-    uuid = Column(String(36))
-    user_auth = Column(JSONB)
-    deleted = Column(Boolean, default = False)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    # def __repr__(self):
-    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/recording_data.py

@@ -1,88 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric, Text
-from sqlalchemy.dialects.postgresql import JSONB
-from biopro.db.base import Session
-
-from .base import Base
-
-# build a model class with a specific table name
-def get_raw_model(channel):
-    tablename = str(channel) + '_recording_data_raws'  # dynamic table name
-    class_name = 'RECORDING_DATA_RAWS' # dynamic class name
-    print('get_raw_model', tablename)
-
-    for mapper in Base.registry.mappers:
-        cls = mapper.class_
-        classname = cls.__name__
-        tblname = cls.__tablename__
-        print(cls, classname, tblname)
-        if (classname == class_name):
-            if tblname == tablename:
-                return cls
-
-    Model = type(class_name, (RECORDING_DATA_RAWS,), {
-        '__tablename__': tablename
-    })
-    return Model
-
-
-class RECORDING_DATA_RAWS(Base):
-    __abstract__ = True
-
-    id = Column(Integer, primary_key=True)
-    name = Column(String(255))
-    parent = Column(Integer)
-    size = Column(String(255))
-    path = Column(JSONB)
-    uuid = Column(String(255))
-    serial_number = Column(String(255))
-    data_format = Column(String(255))
-    channel = Column(Integer)
-    start_time = Column(String(255))
-    end_time = Column(String(255))
-    data = Column(Text)
-    compressed = Column(Boolean)
-    deleted = Column(Boolean)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    # @classmethod
-    # def create_subject_data(cls, subject_id, project, meta, data):
-    #     with Session() as session:
-    #         subject = Subject(
-    #             subject_id = subject_id,
-    #             project = project,
-    #             meta= meta,
-    #             data = data
-    #         )
-    #         session.add(subject)
-    #         session.commit()
-    #         return subject
-        
-    # @classmethod
-    # def check_name_duplicate(cls, collection_name, parent, n):
-    #     with Session() as session:
-    #         result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
-    #         if result is None:
-    #             return cls.generate_name(collection_name, n)
-    #         else:
-    #             new_num = n + 1
-    #             # new_name =  f"{collection_name}({new_num})" 
-    #             return cls.check_name_duplicate(collection_name, parent, new_num)
-
-    # @classmethod
-    # def generate_name(cls, collection_name, n):
-    #     if n==0:
-    #         return collection_name
-    #     else:
-    #         return f"{collection_name}({n})" 
-    
-    # @classmethod
-    # def find_data(cls, id):
-    #     with Session() as session:
-
-    #         result = session.query(RECORDING_DATA_RAWS).first()
-    #         return result
-    
-        

python/biopro/db/subject_data.py

@@ -1,60 +0,0 @@
-from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
-from sqlalchemy.sql import select, func
-from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
-from sqlalchemy.dialects.postgresql import JSONB
-from biopro.db.base import Session
-
-from .base import Base
-
-class SubjectData(Base):
-    __tablename__ = "subject_datas"
-
-    id = Column(Integer, primary_key=True)
-    subject_id = Column(Integer)
-    mode = Column(JSONB)
-    data = Column(JSONB)
-    user_auth = Column(JSONB)
-    meta = Column(String(255))
-    project = Column(String(255))
-    deleted = Column(Boolean)
-    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
-    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
-
-    @classmethod
-    def create_subject_data(cls, subject_id, project, meta, data):
-        with Session() as session:
-            subject = SubjectData(
-                subject_id = subject_id,
-                project = project,
-                meta= meta,
-                data = data
-            )
-            session.add(subject)
-            session.commit()
-            return subject
-        
-    # @classmethod
-    # def check_name_duplicate(cls, collection_name, parent, n):
-    #     with Session() as session:
-    #         result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
-    #         if result is None:
-    #             return cls.generate_name(collection_name, n)
-    #         else:
-    #             new_num = n + 1
-    #             # new_name =  f"{collection_name}({new_num})" 
-    #             return cls.check_name_duplicate(collection_name, parent, new_num)
-
-    # @classmethod
-    # def generate_name(cls, collection_name, n):
-    #     if n==0:
-    #         return collection_name
-    #     else:
-    #         return f"{collection_name}({n})" 
-    
-    # @classmethod
-    # def find_collection(cls, collection_name, parent):
-    #     with Session() as session:
-    #         result = session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
-    #         return result
-    
-        

python/biopro/device/device_cc2650.py

@@ -350,7 +350,6 @@ class CC2650Device(Device):
         self._recording_file_name: str = 'recording_data'
         self._coeff: bytes = b''
         self._device_version = ""
-        self._cali_version = -1
 
     @property
     def device_id(self) -> int:
@@ -433,12 +432,12 @@ class CC2650Device(Device):
         if length == 1 and instruction[0] < 0:
             return struct.pack('2B1b',
                            (ins_type & 0xF0) | (self.device_id & 0x0F),
-                           (ins_oper & 0xFF),
+                           (ins_oper & 0xF0) | (length & 0x0F),
                            *instruction)
 
         return struct.pack('%dB' % (length + 2),
                            (ins_type & 0xF0) | (self.device_id & 0x0F),
-                           (ins_oper & 0xFF),
+                           (ins_oper & 0xF0) | (length & 0x0F),
                            *instruction)
 
     def _decode_data(self, ins_oper: int, data: bytes) -> bytes:
@@ -478,13 +477,13 @@ class CC2650Device(Device):
 
         else:
             if data is not None and len(data) > 0:
-                year = struct.unpack('<B', data[2:3])[0]
-                month = struct.unpack('<B', data[3:4])[0]
-                day = struct.unpack('<B', data[4:5])[0]
-                hour = struct.unpack('<B', data[5:6])[0]
-                minute = struct.unpack('<B', data[6:7])[0]
-                mac1 = struct.unpack('<B', data[7:8])[0]
-                mac2 = struct.unpack('<B', data[8:9])[0]
+                year = struct.unpack('<B', data[0:1])[0]
+                month = struct.unpack('<B', data[1:2])[0]
+                day = struct.unpack('<B', data[2:3])[0]
+                hour = struct.unpack('<B', data[3:4])[0]
+                minute = struct.unpack('<B', data[4:5])[0]
+                mac1 = struct.unpack('<B', data[5:6])[0]
+                mac2 = struct.unpack('<B', data[6:7])[0]
                 mac1 = "%02X" % mac1
                 mac2 = "%02X" % mac2
 
@@ -537,8 +536,8 @@ class CC2650Device(Device):
             self._master.log_warn('device', self.device_id, 'update_battery_info no response')
 
         else:
-            if data is not None and len(data) > 2 :
-                battery = struct.unpack('<H', data[2:4])[0]
+            if data is not None and len(data) == 4 :
+                battery = struct.unpack('<H', data[1:3])[0]
                 if battery is not None:
                     self._battery = battery
 
@@ -550,39 +549,6 @@ class CC2650Device(Device):
             self.update_calibration_info(device_type)
 
         return self._coeff
-    
-    def _check_crc(self, data):
-        data_chk_sum = data[-1]
-
-        # print('data:', list(data), 'data_chk_sum:', data_chk_sum)
-        # print('data[0:-1]:', list(data[0:-1]), 'check_sum:', sum(data[0:-1]) & 0b11111111)
-        
-        if data_chk_sum == sum(data[0:-1]) & 0b11111111:
-            return True
-        
-        return False
-
-    def update_cali_version(self) -> bool:
-        for _ in range(5): 
-            try:
-                code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, 0)
-                self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
-            except SendInstructionTimeoutError:
-                self._master.log_warn('device', self.device_id, 'update cali version error')
-                return False
-            except RuntimeError:
-                self._master.log_warn('device', self.device_id, 'update cali version error')
-                return False
-            else:
-                version = self._master.read_characteristic(self.device_id,CC2650MasterDevice.RETURN_HANDLE)
-
-                if self._check_crc(version):
-                    self._cali_version = struct.unpack('<H', version[2:4])[0]
-                    print('self._cali_version=', self._cali_version)
-                    return True
-                
-        self._master.log_warn('device', self.device_id, 'update cali version error')
-        return False
 
     def update_calibration_info(self, device_type: str):
         """ get device calibration info """
@@ -605,6 +571,20 @@ class CC2650Device(Device):
         elif device_type == 'TDC4VC':
             i = 0
             request_times = 0
+            # neulive 2.1 (only support ch1~ch8)
+            # try:
+            #     # send
+            #     code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, 0)
+            #     self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
+            #     # receive
+            #     data = self._master.read_characteristic(self.device_id, CC2650MasterDevice.RETURN_HANDLE)
+            #
+            #     coeff.append(self._decode_data(DeviceInstruction.CIS_CALI, data))
+            # except SendInstructionTimeoutError:
+            #     self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
+            # except RuntimeError:
+            #     self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
+
             while i < 4:
                 try:
                     # print('i', i)
@@ -680,34 +660,43 @@ class CC2650Device(Device):
                             break
 
         elif device_type == 'EISZeroOne':
-            i = 1
-            while i <= 24:
-                for _ in range(5): 
-                    try:
-                        # send
-                        code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, i)
-                        self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
+            i = 0
+            request_times = 0
+            while i < 7:
+                try:
+                    # send
+                    code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, i)
+                    self._master.write_characteristic(self.device_id, CC2650MasterDevice.COMMAND_HANDLE, code)
 
-                    except SerialTimeoutException:
-                        self._master.log_warn('device', self.device_id, 'send update_calibration_info instruction fail')
-                        continue
-                    
+                    sleep(0.1)
+
+                    # receive
+                    data = self._master.read_characteristic(self.device_id,
+                                                            CC2650MasterDevice.RETURN_HANDLE)
+                    coeff.append(self._decode_data(DeviceInstruction.CIS_CALI, data))
+
+                except SendInstructionTimeoutError as e:
+                    print(e)
+                    self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
+                    raise BaseException
+                except RuntimeError as e:
+                    print(e)
+                    self._master.log_warn('device', self.device_id, 'update_calibration_info no response - 2')
+                    request_times += 1
+                    if request_times > 3:
+                        self._master.reset(self.device_id)
+                        break
+                else:
+                    # print('data success')
+                    if len(data) > 0:
+                        i += 1
                     else:
-                        try:
-                            # receive
-                            data = self._master.read_characteristic(self.device_id,
-                                                                CC2650MasterDevice.RETURN_HANDLE)
-                        except RecvTimeout:
-                            self._master.log_warn('device', self.device_id, 'update_calibration_info no response')
+                        request_times += 1
+                        if request_times > 3:
+                            self._master.reset(self.device_id)
+                            break
+
 
-                        else:
-                            if self._check_crc(data) and data is not None:
-                                coeff.append(self._decode_data(DeviceInstruction.CIS_CALI, data))
-                                i += 1
-                            else:
-                                self._master.log_warn('device', self.device_id, 'update_calibration_info crc wrong')
-                                continue
-                            
         else:
             # default: neulive 2.1
             for i in range(1):
@@ -1961,6 +1950,119 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         """initialize cc2650 (master)"""
         pass
 
+    def scan_send_ins(self):
+        # send scan command
+        try:
+            print(':: scan_send_ins ::', self.CC2650_COMMAND_LEN, 3, 0, 0)
+            self._cc2650.send(self.CC2650_COMMAND_LEN, 3, 0, 0)
+
+        except SerialTimeoutException as e:
+            raise RecvTimeout('send scan fail') from e
+
+        else:
+            # wait scanning
+            # sleep(2)
+            clean_buf = self._cc2650.receive_timeout("20B", timeout=3)
+            print("clean_buf = ", clean_buf)
+
+    # def cc2650_uart_irq(self):
+    #     uart_irq = self.get_uart_irq_pin()
+    #     uart_irq.output(False)
+    #     sleep(0.001)
+    #     uart_irq.output(True)
+
+    @synchronized
+    def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
+        self._found = found = []
+        self._found_with_id = []
+        hdr_BPHS = [66, 80, 72, 83]
+        scan_response: Union[Optional[tuple], Any] = None
+
+        # build scan instruction
+        scan_ins = bytearray()
+        scan_ins.append(3) #scan instruction
+        scan_ins.append(1) #length
+        scan_ins.append(0xF1)
+
+        # print('send_scan', bytes(scan_ins))
+        self._cc2650.send("bytes", bytes(scan_ins))
+
+        try:    
+            scan_response = self._cc2650.recv_uart(timeout)
+        except RecvTimeout:
+            # self.reset_internal()
+            # self.reset_hardware()
+            # self._interface.flush()
+            return False
+
+        # instruction format:
+        # ins[0]: get_scan_response = 0x04
+        #  ins[1]: number of scanned device=0; a certain device = device_id (could be 1~8)
+        #   ins[2]: addr=MAC=1, localName=2, company_code=3, version_info=4, battery_info=5, all_info=6;
+        #           attr_length=0, e.g. len(addr)=6, len(company_code)=4
+        local_mac = None
+        local_cc = None
+        local_ver = None
+        local_bat = None
+        local_name = None
+
+        local_addr_type = None
+
+        # get device attribute length
+        attr_length = [6, 4, 6, 5, 20]
+        index = 0
+
+        local_mac = get_device_mac_in_address_format(scan_response[index:index + 6])
+        index = index + 6
+        # print("local_mac = ", hex(local_mac[0]), hex(local_mac[1]),
+        #       hex(local_mac[2]), hex(local_mac[3]),
+        #       hex(local_mac[4]), hex(local_mac[5]))
+
+        local_cc = get_device_company_code(scan_response[index:index + 4])
+        index = index + 4
+        # print("local_cc = ", local_cc)
+
+        local_ver = scan_response[index:index + 6]
+        index = index + 6
+        # print("local_ver = ", local_ver)
+
+        local_bat = get_device_battery_info(scan_response[index:index + 5])
+        index = index + 5
+        # print("local_bat = ", local_bat)
+
+        local_name = get_device_name_in_string_format(list(scan_response[index:index + 20]))
+        index = index + 20
+        # print("local_name = ", local_name)
+
+        # addr type is don't care in BMD380
+        local_addr_type = int(scan_response[index:index + 1][0])
+        # local_addr_type = 0xFF
+        index = index + 1
+        # print("local_addr_type = ", local_addr_type)
+
+        response = is_headstage_device_central_version(local_mac,
+                                                       local_addr_type,
+                                                       local_name,
+                                                       local_cc,
+                                                       local_ver,
+                                                       local_bat)
+        if response is not None:
+            self.log_info('found', address_str(response.mac_address), response.serial_number)
+            self._interface.flush_input()               
+
+            # apppend into db
+            devicesList = DeviceAPI.getByMac(address_str(response.mac_address))
+            if devicesList is not None:
+                if len(devicesList) == 0:
+                    DeviceAPI.create(response.device_name, local_ver, address_str(response.mac_address))
+
+            found.append(response)
+            # print('scan_done_found', found)
+            self._found_with_id.append((response, 0 + 1))
+            callback(response)
+
+        return True
+
     def decode_uart_preamble(self, raw_uart: tuple, expect_ret_len: int = 0) -> Optional[list]:
         # print("decode_uart_preamble: raw_uart = ", raw_uart)
         if raw_uart is None:
@@ -1987,154 +2089,34 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         return self._found
 
     def check_mem_survive(self) -> Optional[CC2650Device]:
-        chk_mem_response = None
+        ack = []
         ins = bytearray()
-
-        ins.append(0x0A)
-        ins.append(0x01) #length
+        ins.append(10)
+        ins.append(1) #length
         ins.append(0xF1)
-        self._interface.flush_input()
+        # print('ins', list(ins))
 
         try:
-            self.log_verbose('[CC2650]', 'check_mem_survive att_write','0x'+str.upper(ins.hex()))
             self._cc2650.send("bytes", bytes(ins))
 
-        except SerialTimeoutException:
-            self.log_verbose('[CC2650]', 'check_mem_survive send fail')
+        except SerialTimeoutException as e:
+            raise RecvTimeout('device CC2650 check_mem_survive timeout') from e
 
         else:
             try:
-                chk_mem_response = self._cc2650.recv_uart(0.001)
+                ack = self._cc2650.recv_uart(0.001)
 
             except RecvTimeout:
-                self.log_verbose('[CC2650]', 'check_mem_survive response timeout, no memory board')
+                self.log_info("no memory board")
 
-        if chk_mem_response is None:
-            return False
+            # else:
+            #     print('ack=', ack)
 
-        pack_len = chk_mem_response[0]
-        mem_ack = chk_mem_response[1:pack_len+1]
-
-        if mem_ack == [3]:
-            chk_mem_response_hex = ''.join(format(i, '02X') for i in chk_mem_response)
-            self.log_verbose('[CC2650]', 'check_mem_survive success', '0x'+chk_mem_response_hex)
+        if ack == [3]:
             return True
 
         return False
 
-    @synchronized
-    def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
-        self._found = found = []
-        self._found_with_id = []
-        scan_response = None
-        ins = bytearray()
-
-        ins.append(0x03)
-        ins.append(0x01) #length
-        ins.append(0xF1)
-        self._interface.flush_input()
-
-        for _ in range(5):
-            try:
-                self.log_verbose('[CC2650]', 'scan_callback att_write','0x'+str.upper(ins.hex()))
-                self._cc2650.send("bytes", bytes(ins))
-
-            except SerialTimeoutException:
-                self.log_verbose('[CC2650]', 'scan_callback send fail, rescan')
-                continue
-
-            else:
-                try:
-                    scan_response = self._cc2650.recv_uart(0.01)
-
-                except RecvTimeout:
-                    self.log_verbose('[CC2650]', 'scan_callback response timeout, no device, rescan')
-                    continue
-
-                else:
-                    if scan_response is None:
-                        self.log_verbose('[CC2650]', 'scan_callback response is None, rescan')
-                        continue
-                    else:
-                        break
-
-        if scan_response is None:
-            self.log_verbose('[CC2650]', 'scan_callback response is None--2')
-            return False
-
-        scan_response_hex = ''.join(format(i, '02X') for i in scan_response)
-        self.log_verbose('[CC2650]', 'scan_callback success', '0x'+scan_response_hex)
-
-        if len(scan_response) <= 2:
-            print('******************************************************************')
-            print('******************************************************************')
-            print('******************************************************************')
-            print('******************************************************************')
-            print('****need to fix, len(scan) <= 2')
-            print()
-            return False
-
-        pack_len = scan_response[0]
-        device_info_pkg = scan_response[1:pack_len+1]
-
-        # instruction format:
-        # ins[0]: get_scan_response = 0x04
-        #  ins[1]: number of scanned device=0; a certain device = device_id (could be 1~8)
-        #   ins[2]: addr=MAC=1, localName=2, company_code=3, version_info=4, battery_info=5, all_info=6;
-        #           attr_length=0, e.g. len(addr)=6, len(company_code)=4
-        local_mac = None
-        local_cc = None
-        local_ver = None
-        local_bat = None
-        local_name = None
-        local_addr_type = None
-
-        # get device attribute length
-        attr_length = [6, 4, 6, 5, 20]
-        index = 0
-
-        local_mac = get_device_mac_in_address_format(device_info_pkg[index:index + 6])
-        index = index + 6
-
-        local_cc = get_device_company_code(device_info_pkg[index:index + 4])
-        index = index + 4
-
-        local_ver = device_info_pkg[index:index + 6]
-        index = index + 6
-
-        local_bat = get_device_battery_info(device_info_pkg[index:index + 5])
-        index = index + 5
-
-        local_name = get_device_name_in_string_format(list(device_info_pkg[index:index + 20]))
-        index = index + 20
-
-        local_addr_type = int(device_info_pkg[index:index + 1][0])
-
-        index = index + 1
-
-        response = is_headstage_device_central_version(local_mac,
-                                                       local_addr_type,
-                                                       local_name,
-                                                       local_cc,
-                                                       local_ver,
-                                                       local_bat)
-        if response is not None:
-            self.log_info('found', address_str(response.mac_address), response.serial_number)
-            self._interface.flush_input()               
-
-            # apppend into db
-            devicesList = DeviceAPI.getByMac(address_str(response.mac_address))
-            if devicesList is not None:
-                if len(devicesList) == 0:
-                    DeviceAPI.create(response.device_name, local_ver, address_str(response.mac_address))
-
-            found.append(response)
-            # print('scan_done_found', found)
-            self._found_with_id.append((response, 0 + 1))
-            callback(response)
-
-        return True
-
     @synchronized
     def connect(self, response: DeviceResponseInfo, direct_connect: bool = False) -> Optional[CC2650Device]:
         if self._handle is not None:
@@ -2144,166 +2126,225 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         addr_type = response.addr_type
         address_s = cc2650.address_str(address)
 
+        self.log_info(DEVICE_CONNECTING, address_s)
+
+        connect_ins = bytearray()
+        connect_ins.append(5)
+        connect_ins.append(8) #length
+        connect_ins.append(addr_type)
+        connect_ins.append(address[0])
+        connect_ins.append(address[1])
+        connect_ins.append(address[2])
+        connect_ins.append(address[3])
+        connect_ins.append(address[4])
+        connect_ins.append(address[5])
+        connect_ins.append(0xF1)
+
         connected = False
-        connect_response = None
-        ins = bytearray()
 
-        ins.append(0x05)
-        ins.append(0x08) #length
-        ins.append(addr_type)
-        ins.append(address[0])
-        ins.append(address[1])
-        ins.append(address[2])
-        ins.append(address[3])
-        ins.append(address[4])
-        ins.append(address[5])
-        ins.append(0xF1)
-        self._interface.flush_input()
+        # send connect command
+        if direct_connect is True:
 
-        for retry in range(5):
+            # send device mac and addrType
             try:
-                self.log_verbose('[CC2650]', 'connect att_write', '0x'+str.upper(ins.hex()))
-                self._cc2650.send("bytes", bytes(ins))
+                self._cc2650.send("bytes", bytes(connect_ins))
 
-            except RecvTimeout:
-                self.log_verbose('[CC2650]', 'connect send fail')
-                continue
+            except SerialTimeoutException as e:
+                raise RecvTimeout('device CC2650 connect fail') from e
+                return None
 
-            else:
+            # connection establish done?
+            for retry_recv_ack in range(10):
                 try:
-                    connect_response = self._cc2650.recv_uart(2)
+                    con_done = self._cc2650.recv_uart(timeout = 0.5)
+                    # print("con_done = ", con_done)
+
                 except RecvTimeout:
-                    self.log_verbose('[CC2650]', 'connect response timeout')
-                    if retry < 5:
-                        self.log_verbose('[CC2650]', 'connect retry')
-                        continue
-                else:
+                    self.log_info("recv connection timeout, retry... ")
+                    continue
+
+                # is the ack valid?
+                if con_done is None:
+                    continue
+
+                elif con_done[0] is 46 and \
+                        con_done[1] is 80 and \
+                        con_done[2] is 48 and \
+                        con_done[3] is 4:
+                    connected = True
                     break
+        else:
+            for dev in self._found:
+                if dev.mac_address == address:
 
-        if connect_response is None:
-            return False
+                    # send device mac and addrType
+                    try:
+                        # print('send_connect',bytes(connect_ins))
+                        self._cc2650.send("bytes", bytes(connect_ins))
 
-        pack_len = connect_response[0]
-        connect_ack = connect_response[1:pack_len+1]
+                    except SerialTimeoutException as e:
+                        raise RecvTimeout('device CC2650 connect fail') from e
 
-        if connect_ack[0] == 46 and connect_ack[1] == 80 and \
-           connect_ack[2] == 48 and connect_ack[3] == 4:
-            connected = True
-            connect_response_hex = ''.join(format(i, '02X') for i in connect_response)
-            self.log_verbose('[CC2650]', 'connect success', '0x'+connect_response_hex)
+                    else:
+                        sleep(2)
 
-        if connected == True:
-            # CC2650Device(device_id, master, scan_response) is a slave device
-            # device_id is don't care, because it will be overwrite later
-            dont_care = 0
-            self._device = ret = CC2650Device(device_id=dont_care, master=self, response_info=response)
-            self.log_verbose('[CC2650]', DEVICE_CONNECTED, address_s)
-            return ret
+                    # connection establish done?
+                    for retry_recv_ack in range(5):
+                        self._cc2650.send("bytes", bytes((0, 0, 0, 0)))
 
-        self.log_verbose('[CC2650]', 'connect fail')
-        return False
+                        try:
+                            con_done = self._cc2650.recv_uart(timeout = 0.1)
+
+                        except RecvTimeout:
+                            self.log_info("recv connection timeout, retry... ")
+                            continue
+
+                        # is the ack valid?
+                        if con_done is None:
+                            continue
+
+                        elif con_done[0] is 46 and \
+                                con_done[1] is 80 and \
+                                con_done[2] is 48 and \
+                                con_done[3] is 4:
+                            connected = True
+                            # print('con_done=', con_done)
+                            break
+                        else:
+                            continue
+
+        # if select device is invalid or connect failed
+        self._interface.flush_input()
+        if connected is False:
+            if direct_connect is True:
+                self.reset_internal()
+            self.reset_hardware()
+            self._interface.flush()
+            return None
+
+        # CC2650Device(device_id, master, scan_response) is a slave device
+        # device_id is don't care, because it will be overwrite later
+        dont_care = 0
+        self._device = ret = CC2650Device(device_id=dont_care, master=self, response_info=response)
+        self.log_info(DEVICE_CONNECTED, address_s)
+        sleep(0.5)
+        print('ret',ret)
+
+        return ret
 
     @synchronized
     def disconnect(self, device: int, force=False) -> bool:
+        self.log_info(DEVICE_DISCONNECTING, device)
+
         ins = bytearray()
-
-        ins.append(0x08)
-        ins.append(0x01) #length
+        ins.append(8)
+        ins.append(1) #length
         ins.append(0xF1)
-        self._interface.flush_input()
-
-        for _ in range(5): 
-            try:
-                self.log_verbose('[CC2650]', 'disconnect att_write','0x'+str.upper(ins.hex()))
-                self._cc2650.send("bytes", bytes(ins))
-
-            except SerialTimeoutException:
-                self.log_verbose('[CC2650]', 'disconnect send fail')
-                continue
-            
-            else:
-                self.reset_internal()
-                self.reset_hardware()
-                self.log_verbose('[CC2650]', 'disconnect success')
-                return True
-
-        self.log_verbose('[CC2650]', 'disconnect fail')
-        return False
-
-    @synchronized
-    def write_characteristic(self, device: int, handle: int, data: bytes) -> bool:
-        write_response = None
-        ins = bytearray()
-
-        ins.append(0x06)
-        ins.append(len(data)+2) #length = handle + C0C0XXXX(data len) + F1 
-        ins.append(handle)
-        ins.extend(data)
-        ins.append(0xF1)
-        self._interface.flush_input()
 
         try:
-            self.log_verbose('[CC2650]', 'write_characteristic', device, str(hex(handle).upper()))
-            self.log_verbose('[CC2650]', 'write_characteristic att_write','0x'+str.upper(ins.hex()))
+            # print('send_disconnect',bytes(ins))
             self._cc2650.send("bytes", bytes(ins))
-            
-        except SerialTimeoutException:
-            self.log_verbose('[CC2650]', 'write_characteristic send fail')
+
+        except RecvTimeout:
+            self.log_warn('disconnect time out')
+            return False
+
+        except RuntimeError as e:
+            self.log_warn('suppressed error', str(e))
+            return False
 
         else:
-            try:
-                write_response = self._cc2650.recv_uart(0.5)
-
-            except RecvTimeout:
-                self.log_verbose('[CC2650]', 'write_characteristic response timeout')
-
-        if write_response is None:
-            return False
-                
-        pack_len = write_response[0]
-        write_ack = write_response[1:pack_len+1]
-        
-        if write_ack == [3]:
-            write_response_hex = ''.join(format(i, '02X') for i in write_response)
-            self.log_verbose('[CC2650]', 'write_characteristic success', '0x'+write_response_hex)
+            sleep(0.01)
             return True
 
-        self.log_verbose('[CC2650]', 'write_characteristic fail')
-        return False
+        finally:
+            self.log_info(DEVICE_DISCONNECTED, device)
+
+            # reset single 2650 after disconnected
+            self.reset_internal()
+            self.reset_hardware()
+            self._interface.flush()
 
     @synchronized
     def read_characteristic(self, device: int, handle: int) -> Optional[bytes]:
-        read_response = None
-        ins = bytearray()
 
-        ins.append(0x07)
-        ins.append(0x02) #length
+        # print("read_characteristic, expect_data_length = ", expect_data_length)
+
+        ret = None
+        ins = bytearray()
+        ins.append(7)
+        ins.append(2) #length
         ins.append(handle)
         ins.append(0xF1)
-        self._interface.flush_input()
+
+        for _ in range(2):
+            try:
+                # print('send_read',bytes(ins))
+                self._cc2650.send("bytes", bytes(ins))
+            except SerialTimeoutException:
+                raise RecvTimeout('device CC2650 send read_characteristic fail')
+
+            try:
+                ret = self._cc2650.recv_uart(timeout = 2)
+            except Exception as e2:
+                raise RecvTimeout()
+            else:
+                # print("======== read ret = ", ret)
+                self._interface.flush_input()
+
+        # try:
+        #     ret = self._cc2650.recv_uart(timeout = 1)
+        # except Exception as e2:
+        #     raise RecvTimeout()
+        # else:
+        #     # print("read_characteristic ret = ", ret)
+        #     pass
+
+        if ret is None:
+            return None
+
+        return bytes(ret)
+
+    @synchronized
+    def write_characteristic(self, device: int, handle: int, data: bytes):
+
+        # print("device", device)
+        # print("handle", handle)
+        # print("data", data.hex())
+        # self.log_info('reset')
+        self.log_verbose('write_characteristic', device, handle)
+        self.log_verbose('[CC2650]', 'att_write', str.upper(data.hex()))
+        ack = None
+        ret = None
+
+        data_array = bytearray()
+        data_array.append(6)
+        data_array.append(len(data)+2) #length
+        data_array.append(handle)
+        data_array.extend(data)
+        data_array.append(0xF1)
+
 
         try:
-            self.log_verbose('[CC2650]', 'read_characteristic', device, str(hex(handle).upper()))
-            self.log_verbose('[CC2650]', 'read_characteristic att_write','0x'+str.upper(ins.hex()))
-            self._cc2650.send("bytes", bytes(ins))
+            self._cc2650.send("bytes", bytes(data_array))
+            # print('send_write',bytes(data_array))
 
-        except SerialTimeoutException:
-            self.log_verbose('[CC2650]', 'read_characteristic send fail')
+        except SerialTimeoutException as e:
+            raise RecvTimeout('device CC2650 send instruction fail') from e
+
+        # read error code
+        try:
+            ret = self._cc2650.recv_uart()
+
+            # print("_______  write ack = ", ret)
+        except Exception as e2:
+            pass
 
         else:
-            try:
-                read_response = self._cc2650.recv_uart(1)
+            pass
 
-            except RecvTimeout:
-                self.log_verbose('[CC2650]', 'read_characteristic response timeout')
-
-        if read_response is None:
-            return None
-        
-        read_response_hex = ''.join(format(i, '02X') for i in read_response)
-        self.log_verbose('[CC2650]', 'read_characteristic success', '0x'+read_response_hex)
-        
-        return bytes(read_response)
+        self._interface.flush_input()
+        self._interface.flush_output()
 
     def set_notify(self, device: Union[int, Device], enable: bool):
         if isinstance(device, CompletedDevice):
@@ -2404,6 +2445,7 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
         self._cc2650_log_level = self.log_level
 
     def read_characteristic(self, device: int, handle: int) -> Optional[bytes]:
+        self.log_verbose('read_characteristic', device, '0x%02X' % handle)
 
         master = self._cc2650[device]
 
@@ -2461,6 +2503,11 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
             self._interface.flush()
             self._selector.select(device_id)
+            # self._mem_selector.select(device_id)
+            # print("multiMaster selector = ", device_id)
+            # print("\n")
+
+            # device._notify_flag = enable
             try:
                 master.write_characteristic(device_id, self.NOTIFY_HANDLE, value)
             except SendInstructionTimeoutError:

python/biopro/device/manager.py

@@ -253,7 +253,6 @@ class DeviceInternalCommandHandler:
         return True
 
 
-# why inherit MasterDevice ?
 class DeviceManager(MasterDevice, Synchronized):
     """device manager. It manager the device libraries, found device, connected device
     and the control of the master device.
@@ -268,6 +267,7 @@ class DeviceManager(MasterDevice, Synchronized):
                  options: DeviceManagerOptions,
                  handler: Optional[DeviceInternalCommandHandler] = None):
         """
+
         :param options: manager options.
         :param handler: device internal command handler
         """
@@ -277,7 +277,6 @@ class DeviceManager(MasterDevice, Synchronized):
         if handler is None:
             handler = DeviceInternalCommandHandler()
 
-        # control server api
         self._handler: DeviceInternalCommandHandler = handler
         self._options: DeviceManagerOptions = options
 
@@ -287,9 +286,7 @@ class DeviceManager(MasterDevice, Synchronized):
         # hardware
         self._interface = options.interface
         self._master: Optional[MasterDevice] = None
-        # memory board
         self._centralMaster: Optional[MasterDevice] = None
-        # connected device
         self._device: List[CompletedDevice] = []
 
         # demo device
@@ -339,10 +336,6 @@ class DeviceManager(MasterDevice, Synchronized):
     def library_path(self) -> List[Path]:
         return self._repository.library_path
 
-    def get_device_status(self, mac_address) -> Optional[DeviceLibrary]:
-        device = self.get_device(mac_address)
-        return device.status
-
     @logging_info
     def reload_library(self):
         """reload device library"""
@@ -574,23 +567,20 @@ class DeviceManager(MasterDevice, Synchronized):
         :param device: device ID or response info
         :return: CompletedDevice, None if not found.
         """
-        try:
-            if isinstance(device, int):
-                for slave in self._device:
-                    if slave.device_id == device:
-                        return slave
+        if isinstance(device, int):
+            for slave in self._device:
+                if slave.device_id == device:
+                    return slave
 
-            elif isinstance(device, str):
-                for slave in self._device:
-                    if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
-                        return slave
+        elif isinstance(device, str):
+            for slave in self._device:
+                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device:
+                    return slave
 
-            elif isinstance(device, DeviceInfo):
-                for slave in self._device:
-                    if device.match(slave):
-                        return slave
-        except BaseException as e:
-            self.log_error('device not found', str(device))
+        elif isinstance(device, DeviceInfo):
+            for slave in self._device:
+                if device.match(slave):
+                    return slave
 
         return None
 
@@ -832,9 +822,6 @@ class DeviceManager(MasterDevice, Synchronized):
 
         elif func == InternalInstruction.PREDEFINED_DISABLE_CACHE:
             self._device_disable_cache(device, *para)
-        
-        elif func == InternalInstruction.PREDEFINED_IDLE:
-            self._idle(device, *para)
 
         elif isinstance(device, DebugDevice):
             if func == InternalInstruction.PREDEFINED_NOTIFY:
@@ -854,11 +841,6 @@ class DeviceManager(MasterDevice, Synchronized):
                                               InternalInstruction.PREDEFINED_DATA_FORMAT,
                                               f)
 
-    def _idle(self, device: Device, expr: AnyStr):
-        self._handler.device_internal_command(device.device_id,
-                                                InternalInstruction.PREDEFINED_IDLE,
-                                                None)
-
     def _device_data_format_cali(self, device: Device, expr: str, cali: bytes = None):
         if cali is None:
             cali = device.calibration_info(expr)
@@ -1041,9 +1023,15 @@ class DeviceManager(MasterDevice, Synchronized):
             raise RuntimeError(DEVICE_NOT_FOUND, device)
 
         if DeviceCommonInstruction(instruction) is not None:
+            # print('deviceCommonInstr')
+            # print(instruction)
             device.call_instruction(instruction)
+
         elif instruction in device.library.instruction_table:
+            # print('instruction')
+            # print(instruction)
             device.call_instruction(instruction)
+
         else:
             raise RuntimeError(INSTRUCTION_UNKNOWN, instruction)
 

python/biopro/devlib/data.py

@@ -1,7 +1,6 @@
 import abc
 import struct
 import math
-import numpy
 from typing import Optional, TypeVar, Generic, Tuple, Dict, List, AnyStr
 from datetime import datetime
 
@@ -854,7 +853,7 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
 
     __slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
                  '_total_time_stamp', '_mode', '_cycle_start_time',
-                 '_mode_stop', '_show_data')
+                 '_mode_stop')
 
     def __init__(self):
         super().__init__()
@@ -869,8 +868,6 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         self._mode = 0
         self._cycle_start_time = []
 
-        self._show_data = False
-
     @property
     def name(self) -> str:
         return self.NAME
@@ -884,58 +881,20 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
     def decode(self, data: bytes) -> Optional[RecordingData]:
         if len(data) < 18:
             return None
-        
-        #/* Elite Notify data:
-        # * +--------+----------+---------+---------+---------+-----------+-----------------+
-        # * | id(1B) | time(4B) | ch1(4B) | ch2(4B) | ch3(4B) | cycle(2B) | finish_flag(1B) |
-        # * | bat(4B) | notify#(1B) | ch4(4B) | ch5(4B) | ch6(4B) | __(3B) |
-        # * +---------+-------------+---------+---------+---------+--------+
-        # */
-        #/*
-        # * EliteADCControl(): use ADC plot, and send what data to controller
-        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
-        # * |           MODE            |    ch1    |    ch2    |    ch3    |   cycle   |    ch4    |
-        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
-        # * | CURVE_IV                  |    Iin    |    Vout   |    Vin    |           |    Vmon   |
-        # * | CURVE_IV_CY               |    Iin    |    Vout   |    Vin    |     v     |    Vmon   |
-        # * | CURVE_VO                  |    Iin    |    Vout   |    Vin    |           |    Vmon   |
-        # * | CURVE_RT                  |    Iin    |    Vout   |     R     |           |    Vmon   |
-        # * | CURVE_VT                  |    Iin    |    Vin    |           |           |           |
-        # * | CURVE_IT                  |    Iin    |    Vin    |    Vout   |           |    Vmon   |
-        # * | CURVE_CC                  |    Iin    |    Vin    |    Vout   |           |    Vmon   |
-        # * | CURVE_CP                  |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * | CURVE_CV                  |    Iin    | Vout-Vin  |    Vout   |     v     |    Vmon   |
-        # * | CURVE_LSV                 |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * | CURVE_CA                  |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * | CURVE_OCP                 |    Iin    | Vmon-Vin  |    Vin    |           |    Vmon   |
-        # * | CURVE_UNI_PULSE           |  pul1_Iin | pul2_Iin  |           |           |           |
-        # * | CURVE_DPV                 | c1&c2_avg | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * | CURVE_DPV_SMPRATE         |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * | CURVE_DPV_ADVANCE         | c1&c2_avg | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * | CURVE_DPV_ADVANCE_SMPRATE |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
-        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
-        # * 
-        # * ps. c1_avg = pul1_Iin
-        # * ps. c2_avg = pul2_Iin
-        # */
 
-        mem_cnt = data[1]
-        time_stamp: float = struct.unpack('<I', data[1+3:5+3])[0]
-        ch1 = struct.unpack('<i', data[5+3:9+3])[0]  # unit: nA
-        ch2 = struct.unpack('<i', data[9+3:13+3])[0]  # unit: uV
-        ch3 = struct.unpack('<i', data[13+3:17+3])[0]  # unit: mOm
+        current = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
+        voltage = struct.unpack('>i', data[5:9])[0]  # unit: mV
+        impedance = struct.unpack('>i', data[9:13])[0]  # unit: kOm
+        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
+        cycle_number = struct.unpack('>H', data[17:19])[0]
+        finish_mode_falg = data[19]
 
-        cycle_number = struct.unpack('<H', data[17+3:19+3])[0]
-        finish_mode_falg = data[19+3]
-        battery = struct.unpack('<i', data[20+3:24+3])[0]
-        elite_notify_times = data[24+3]
-        ch4 = struct.unpack('<i', data[25+3:29+3])[0]
-        ch5 = struct.unpack('<i', data[29+3:33+3])[0]
-        ch6 = struct.unpack('<i', data[33+3:37+3])[0]
-        # self._show_data = True
-
-        mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
-        ram_num = data[47]
+        # print('decode', list(data[20:]))
+        mem_wrong = data[20]
+        mem_retry_cnt = data[21]
+        mem_green_wrong = data[22]
+        mem_green_retry_cnt = data[23]
+        ram_num = data[24]
         broken_flag = data[-1]
 
         if (finish_mode_falg & 0b11110000 == 0b10100000):
@@ -956,31 +915,25 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                if self._show_data:
-                    print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
-                        '|', ch1, '|', ch2, '|', ch3, '|', cycle_number, 
-                        '|', ch4, '|', ch5, '|', ch6, 
-                        '|', finishMode, '@', str(self.device), flush = True)
+                # print('|', time_stamp, '|', delta, '|', current, '|', voltage, '|', impedance,
+                #       '|', cycle_number, '|', finishMode, '@', str(self.device))
+                # print('|', '{:10}'.format(time_stamp),
+                #       '|', '{:10}'.format(delta),
+                #       '|', '{:10}'.format(current),
+                #       '|', '{:10}'.format(voltage),
+                #       '|', '{:10}'.format(impedance),
+                #       '|', '{:5}'.format(cycle_number),
+                #       '|', '{:1}'.format(finishMode),
+                #       '@', str(self.device), '|')
 
-                    # print('|', '{:10}'.format(time_stamp),
-                    #     '|', '{:4}'.format(delta),
-                    #     '|', '{:10}'.format(int(time_stamp * 1000 / 2)),    #[usec]
-                    #     '|', '{:10}'.format(ch1),                           #[nA]
-                    #     '|', '{:10}'.format(ch2),                           #[uV]
-                    #     '|', '{:10}'.format(ch3),                     
-                    #     '|', '{:5}'.format(cycle_number),
-                    #     '|', '{:10}'.format(ch4),                           #Voutin[uV]
-                    #     '|', '{:10}'.format(ch5),
-                    #     '|', '{:10}'.format(ch6),
-                    #     '|', '{:5}'.format(battery),                        #[mV]
-                    #     '|', '{:4}'.format(elite_notify_times),
-                    #     '|', '{:1}'.format(finishMode),
-                    #     '@', str(self.device), '|', flush = True)
-
-                    # print('|', '{:5}'.format(mem_wrong_information),
-                    #       '|', '{:2}'.format(ram_num),
-                    #       '|', '{:2}'.format(broken_flag),
-                    #       '@', str(self.device), '|')
+                # print('|', '{:5}'.format(mem_wrong),
+                #       '|', '{:5}'.format(mem_retry_cnt),
+                #       '|', '{:5}'.format(mem_green_wrong),
+                #       '|', '{:5}'.format(mem_green_retry_cnt),
+                #       '|', '{:5}'.format(ram_num),
+                #       '|', '{:5}'.format(broken_flag),
+                #       '@', str(self.device), '|')
+                pass
 
         if finishMode == True:
             print("finishMode full data:", list(data), datetime.now())
@@ -989,27 +942,19 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        ret.append_data(0, ch1)
-        ret.append_data(1, ch2)
-        ret.append_data(2, ch3)
+        ret.append_data(0, current)
+        ret.append_data(1, voltage)
+        ret.append_data(2, impedance)
         ret.append_data(3, cycle_number)
-        ret.append_data(4, ch4)
-        ret.append_data(5, ch5)
-        ret.append_data(6, ch6)
-        # ret.append_data(4, battery)
-        # ret.append_data(5, elite_notify_times)
-        # ret.append_data(6, mem_cnt)
-
-        # # memoryboard information
-        # ret.append_data(7, ram_num)
-        # ret.append_data(8, broken_flag)
-        # try:
-        #     ret.append_data(9, mem_wrong_information)
-        #     # print('append_data success, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
-        # except:
-        #     print('append_data fail, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
-
 
+        # memoryboard information
+        # ret.append_data(4, mem_wrong)
+        # ret.append_data(5, mem_retry_cnt)
+        # ret.append_data(6, mem_green_wrong)
+        # ret.append_data(7, mem_green_retry_cnt)
+        # ret.append_data(8, ram_num)
+        # ret.append_data(9, broken_flag)
+        # ret.append_data(4, ram_num)
     
         if cycle_number != self._cycle_number:
             # notify cycle_number change
@@ -1383,9 +1328,9 @@ class EISZeroOneDataDecoder(RecDataDecoder):
 
     __slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
                  '_total_time_stamp', '_mode', '_cycle_start_time',
-                 '_mode_stop', '_last_time_stamp', '_last_delta', 
-                 '_cali_package', 'cali_coeff', '_ac_amp', '_mode',
-                 '_last_phase', '_first_phase_flag', '_show_data')
+                 '_mode_stop', '_last_time_stamp', '_last_delta', '_cali_coeff',
+                 'cali_coeff', '_ac_amp', '_mode', '_freq_start', '_freq_stop',
+                 '_freq_direction', '_last_phase', '_first_phase_flag')
 
     def __init__(self, cali_coeff: bytes = None):
         super().__init__()
@@ -1398,234 +1343,92 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         self._mode_stop = 0
 
         self._cycle_start_time = []
+        self._ac_amp: int = 0
         self._mode: int = 0
+        self._freq_start: int = 0
+        self._freq_stop: int = 0
+        self._freq_direction = 0
         self._last_phase = 0
         self._first_phase_flag = 1
 
-        self._cali_package: Optional[bytes] = None
+        self._cali_coeff: Optional[bytes] = None
         self.cali_coeff: Optional[List[Tuple[int, int]]] = None
 
-        self._show_data = False
-
-        if self._cali_package is None:
-            self._cali_package = cali_coeff
-            self.cali_coeff = self._decode_cali_coeff(self._cali_package)
+        if cali_coeff is not None:
+            self._cali_coeff = cali_coeff
+            self.cali_coeff = self._decode_cali_coeff(cali_coeff)
             
     @staticmethod
     def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
         if cali_coeff != b'':
-            cis_data_len = 20
             cali_table = []
+            phase_para_a = []
+            phase_para_b = []
             hsrtia_a = []
             hsrtia_b = []
-            rolloff = []
-            phase_coeff = []
-            phase_offset = []
+            hsrtia_c = []
+            hsrtia_d = []
 
-            phase_coeff = numpy.zeros([8, 4], dtype = int)
-            phase_offset = numpy.zeros([8, 4], dtype = int)  
+            # print('cali_coeff', cali_coeff)
+            cutoff_freq = struct.unpack('>I', cali_coeff[1:5])[0] * 100     #4
+            # temp = struct.unpack('>B', cali_coeff[5:6])[0]                 #1
+            # hsrtia_200r = struct.unpack('>B', cali_coeff[6:7])[0]           #1
+            # hsrtia_5k = struct.unpack('>H', cali_coeff[7:9])[0]             #2
+            # hsrtia_20k = struct.unpack('>H', cali_coeff[6:8])[0]           #2
+            # hsrtia_160k = struct.unpack('>I', cali_coeff[8:12])[0]         #4
 
-            ########################################
-            # phase_coeff
-            # [[freq0, freq1, freq2, freq3] ----->gain0
-            #  [freq0, freq1, freq2, freq3] ----->gain1
-            #  [freq0, freq1, freq2, freq3] ----->gain2
-            #  [freq0, freq1, freq2, freq3] ----->gain3
-            # ]
-            #######################################
+            index = 20
+            for i in range(index, index+16, 8):
+                phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
+                phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0])
 
-            #hstia=0
-            cis_cali_packet = 1
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
+            index = 40
+            for i in range(index, index+16, 8):
+                phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
+                phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0]) 
 
-            cis_cali_packet = 2
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 0
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 3
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 0
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            #hstia=1
-            cis_cali_packet = 4
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
+            #Lv[0] 160k
+            index = 60
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
-            cis_cali_packet = 5
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 1
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 6
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 1
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
+            #Lv[1] 20k
+            index = 80
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
-            #hstia=2
-            cis_cali_packet = 7
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
+            #Lv[2] 5k
+            index = 100
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
-            cis_cali_packet = 8
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 2
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 9
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 2
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
+            #Lv[3] 200R
+            index = 120
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
-            #hstia=3
-            cis_cali_packet = 10
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
+            # hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0])
+            # hsrtia_b.append(struct.unpack('>I', cali_coeff[index+5:index+9])[0]/1e6)
+            # hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e5)
+            # hsrtia_d.append(struct.unpack('>I', cali_coeff[index+13:index+17])[0]/1e6)
 
-            cis_cali_packet = 11
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 3
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 12
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 3
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
+            # print('cutoff_freq', cutoff_freq)
+            # print('hsrtia_a', hsrtia_a)
+            # print('hsrtia_b', hsrtia_b)
+            # print('hsrtia_c', hsrtia_c)
+            # print('hsrtia_d', hsrtia_d)
+            # print('phase_para_a', phase_para_a)
+            # print('phase_para_b', phase_para_b)
 
-            #hstia=4
-            cis_cali_packet = 13
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
-
-            cis_cali_packet = 14
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 4
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 15
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 4
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-
-            #hstia=5
-            cis_cali_packet = 16
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
-
-            cis_cali_packet = 17
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 5
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 18
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 5
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-
-            #hstia=6
-            cis_cali_packet = 19
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
-
-            cis_cali_packet = 20
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 6
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 21
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 6
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-
-            #hstia=7
-            cis_cali_packet = 22
-            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+2:index+6])[0])
-            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+6:index+14])[0])
-            rolloff.append(struct.unpack('>i', cali_coeff[index+14:index+18])[0])
-
-            cis_cali_packet = 23
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 7
-            phase_coeff[g][0] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][0] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][1] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][1] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            
-            cis_cali_packet = 24
-            index = (cis_cali_packet - 1) * cis_data_len
-            g = 7
-            phase_coeff[g][2] = struct.unpack('>i', cali_coeff[index+2:index+6])[0]
-            phase_offset[g][2] = struct.unpack('>i', cali_coeff[index+6:index+10])[0]
-            phase_coeff[g][3] = struct.unpack('>i', cali_coeff[index+10:index+14])[0]
-            phase_offset[g][3] = struct.unpack('>i', cali_coeff[index+14:index+18])[0]
-            print('hsrtia_a', hsrtia_a)
-            print('hsrtia_b', hsrtia_b)
-            print('rolloff', rolloff)
-            print('phase_coeff')
-            print(phase_coeff)
-            print('phase_offset')
-            print(phase_offset)
-
-            cali_table.append((phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff))
+            cali_table.append((cutoff_freq, phase_para_a, phase_para_b, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
 
             return cali_table
         else:
@@ -1634,10 +1437,10 @@ class EISZeroOneDataDecoder(RecDataDecoder):
 
     @property
     def name(self) -> AnyStr:
-        if self._cali_package is None:
+        if self._cali_coeff is None:
             return self.NAME
         else:
-            return self.NAME.encode() + b':' + self._cali_package
+            return self.NAME.encode() + b':' + self._cali_coeff
 
     def message(self) -> Optional[str]:
         ret = self._message
@@ -1649,20 +1452,15 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        ch1 = struct.unpack('>i', data[1+3:5+3])[0]  # unit: 1/1000 nA
-        ch2 = struct.unpack('>i', data[5+3:9+3])[0]  # unit: mV
-        ch3 = struct.unpack('>i', data[9+3:13+3])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
-        d19 = data[19+3]
-        gain = data[20+3]
-        finishMode = (d19 & 0x80) >> 7  
-        ch4 = struct.unpack('<i', data[21+3:25+3])[0] # Amp[uV]
+        ch1 = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
+        ch2 = struct.unpack('>i', data[5:9])[0]  # unit: mV
+        ch3 = struct.unpack('>i', data[9:13])[0]  # unit: kOm
+        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
+        cycle_number = struct.unpack('>H', data[17:19])[0]
+        d19 = data[19]
+        gain = (d19 & 0x0F)
+        finishMode = (d19 & 0x80) >> 7        
         
-        notify_one = struct.unpack('<i', data[25+3:29+3])[0]
-        notify_two = struct.unpack('<i', data[29+3:33+3])[0]
-        notify_three = struct.unpack('<i', data[33+3:37+3])[0]
-
         if time_stamp == 0:
             self._start_return_data = True
 
@@ -1670,7 +1468,7 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             return None
 
         if time_stamp != 0 and self._start_return_data == True:
-            if (self._mode == 0 or self._mode == 5):
+            if (self._mode == 0):
                 time_stamp, delta, ret_get_time_stamp = self.eis_get_time_stamp(time_stamp)
             else:
                 time_stamp, delta, ret_get_time_stamp = self.get_time_stamp(time_stamp)
@@ -1679,83 +1477,101 @@ class EISZeroOneDataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                if self.cali_coeff is not None and (self._mode == 0 or self._mode == 5):
+                if self.cali_coeff is not None and self._mode == 0:
+                    phase_para_a = []
+                    phase_para_b = []
                     hsrtia_a = []
                     hsrtia_b = []
-                    rolloff = []
-                    phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff = self.cali_coeff[0]
+                    hsrtia_c = []
+                    hsrtia_d = []
+                    cutoff_freq, phase_para_a, phase_para_b, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
+                    voltage_amp = round(self._ac_amp * 800 / 2047) # use UI value
+                    if (self._freq_start > self._freq_stop):
+                        self._freq_direction = 0
+                    else:
+                        self._freq_direction = 1
 
-                if (self._mode == 0 or self._mode == 5):
+                if (self._mode == 0):
                     img = ch1
                     real = ch2
                     freq = ch3
-                    fre_idx = 0
-                    voltage_amp = round(ch4 / 1000) # Amp[mV]
-                    rolloff_cali = rolloff[gain]
 
-                    voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 /  rolloff_cali ** 2 / 1e4)
-                    current = (voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain]) / 1e8 #[nA]
-                    
+                    voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 / cutoff_freq ** 2)
+
+                    # if (gain == 3):
+                    #     current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
+                    # else:
+                    current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
+                    # print(current)
+                    # print(voltage_mag)
+                    # print(hsrtia_a[gain])
+                    # print(hsrtia_b[gain])
+                    # print(hsrtia_c[gain])
+
                     if (current != 0):
-                        # impedance[mOhm] = voltage_amp[mv] * 1000000 / 1.414213 / current[nA]       #RMS=amp*SQRT(2), SQRT(2)=1.414213
-                        impedance = voltage_amp * 707106.78 / current
+                        # impedance = voltage_amp * 1000_000 / 1.414213 / current 
+                        impedance = voltage_amp * 707106.78 / current 
                     else:
                         impedance = 0
 
-                    raw_phase = math.atan2(img , real) * 180 / math.pi
+                    if (real > 0):
+                        raw_phase = math.atan(img / real) * 180 / math.pi
+                    elif (real == 0):
+                        raw_phase = 90
+                    else:
+                        raw_phase = math.atan(img / real) * 180 / math.pi + 180
 
                     if (freq >= 1000000): # 10000 Hz
-                        fre_idx = 0
+                        i = 0
                     elif (freq >= 10000): # 100 Hz
-                        fre_idx = 1
+                        i = 1
                     elif (freq >= 1000): # 10 Hz
-                        fre_idx = 2
+                        i = 2
                     elif (freq >= 1): # 0.01 Hz
-                        fre_idx = 3
+                        i = 3
                     
-                    ideal_raw_phase = phase_coeff[gain][fre_idx] /1e10 * freq + phase_offset[gain][fre_idx] / 1e6
+                    ideal_raw_phase = phase_para_a[i] /1e10 * freq + phase_para_b[i] / 1e6
+
                     phase = raw_phase - ideal_raw_phase
-                    phase = phase % 180 if phase % 180<=90 else phase % 180-180
 
-                    imag_after_cal = round(impedance * math.sin(phase * math.pi / 180))
-                    real_after_cal = round(impedance * math.cos(phase * math.pi / 180))
+                    if (self._first_phase_flag):
+                        self._last_phase = phase
+                        self._first_phase_flag = 0
+                    elif (abs(phase - self._last_phase) >= 200):
+                        phase -= 360
+                        self._last_phase = phase
 
-                if self._show_data:
-                    if (self._mode == 0 or self._mode == 5):
-                        print('|', '{:10}'.format(time_stamp),
-                              '|', '{:5}'.format(delta),
-                              '|', '{:5}'.format(ch1),                            #raw_img
-                              '|', '{:5}'.format(ch2),                            #raw_real
-                              '|', '{:8}'.format(ch3 * 10), '[mHz]',              #Frequency [mHz]
-                              '|', '{:5}'.format(cycle_number),                   #cycle
-                              '|', '{:5}'.format(round(imag_after_cal)), '[Ohm]', #Z_imag [Ohm]
-                              '|', '{:5}'.format(round(real_after_cal)), '[Ohm]', #Z_real [Ohm]
-                              '|', '{:5}'.format(round(impedance)), '[Ohm]',      #Impedance [Ohm]
-                              '|', '{:5}'.format(round(phase*1000)), '[mdegree]', #Phase [millidegree]
-                              '|', '{:5}'.format(round(current)), '[nA]',         #Current [nA]
-                              '|', '{:1}'.format(gain),                           #gain
-                              '|', '{:1}'.format(finishMode),                     #finishMode
-                              '@', str(self.device), '|', flush = True)
+                    imag_after_cal = impedance * math.sin(round(phase) * math.pi / 180)
+                    real_after_cal = impedance * math.cos(round(phase) * math.pi / 180)
 
-                        print('|', '{:10}'.format(time_stamp),
-                              '|', '{:5}'.format(delta),
-                              '|', '{:5}'.format(notify_one),
-                              '|', '{:5}'.format(notify_two),
-                              '|', '{:5}'.format(notify_three),
-                              '|', '{:5}'.format(voltage_amp),                    #amp[mV]
-                              '|', flush = True)
-                        pass
-                    else:
-                        print('|', '{:10}'.format(time_stamp),
-                            '|', '{:5}'.format(delta),
-                            '|', '{:5}'.format(ch1),
-                            '|', '{:5}'.format(ch2),
-                            '|', '{:5}'.format(ch3),
-                            '|', '{:5}'.format(cycle_number),
-                            '|', '{:1}'.format(gain),
-                            '|', '{:1}'.format(finishMode),
-                            '@', str(self.device), '|', flush = True)
-                        pass
+
+                if (self._mode == 0):
+                    # print('|', '{:10}'.format(time_stamp),
+                    #     '|', '{:5}'.format(delta),
+                    #     '|', '{:6}'.format(ch1),
+                    #     '|', '{:6}'.format(ch2),
+                    #     '|', '{:8}'.format(ch3 / 100),
+                    #     '|', '{:6}'.format(round(voltage_mag)),
+                    #     '|', '{:5}'.format(int(imag_after_cal)),
+                    #     '|', '{:5}'.format(int(real_after_cal)),
+                    #     '|', '{:5}'.format(round(impedance)),
+                    #     '|', '{:5}'.format(round(phase, 1)),
+                    #     '|', '{:5}'.format(round(current, 3)),
+                    #     '|', '{:1}'.format(gain),
+                    #     '|', '{:1}'.format(finishMode),
+                    #     '@', str(self.device), '|')
+                    pass
+                else:
+                    # print('|', '{:10}'.format(time_stamp),
+                    #     '|', '{:5}'.format(delta),
+                    #     '|', '{:5}'.format(ch1),
+                    #     '|', '{:5}'.format(ch2),
+                    #     '|', '{:5}'.format(ch3),
+                    #     '|', '{:5}'.format(cycle_number),
+                    #     '|', '{:1}'.format(gain),
+                    #     '|', '{:1}'.format(finishMode),
+                    #     '@', str(self.device), '|')
+                    pass
 
         if finishMode == True:
             print("finishMode full data:", list(data), datetime.now())
@@ -1764,29 +1580,23 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        if self._mode == 0 or self._mode == 5:
-            ret.append_data(0, ch1)                     #raw_img
-            ret.append_data(1, ch2)                     #raw_real
+        if (self._mode == 0):                           #EIS Mode
+            ret.append_data(3, cycle_number)
+            ret.append_data(0, ch1)                     #Raw Imag  
+            ret.append_data(1, ch2)                     #Raw Real
             ret.append_data(2, ch3 * 10)                #Frequency [mHz]
-            ret.append_data(3, cycle_number)            #cycle
-            ret.append_data(4, imag_after_cal)          #Z_imag [Ohm]
-            ret.append_data(5, real_after_cal)          #Z_real [Ohm]
+            ret.append_data(4, round(imag_after_cal))   #Z_imag [Ohm]
+            ret.append_data(5, round(real_after_cal))   #Z_real [Ohm]
             ret.append_data(6, round(impedance))        #Impedance [Ohm]
-            ret.append_data(7, round(phase*1000))       #Phase [millidegree]
+            ret.append_data(7, round(phase))            #Phase [degree]
             ret.append_data(8, round(current))          #Current [nA]
-            ret.append_data(9, gain)                    #gain
-            
-            #debug data
-            ret.append_data(10, notify_one)
-            ret.append_data(11, notify_two)
-            ret.append_data(12, notify_three)
-            ret.append_data(13, voltage_amp)            #amp[mV]
+            ret.append_data(9, gain)                    #Gain Level
 
         else:                                           #CV Mode
+            ret.append_data(3, cycle_number)
             ret.append_data(0, ch1)                     #Iin     [nA]
             ret.append_data(1, ch2)                     #Vset    [nV]
             ret.append_data(2, ch3)                     #Vout    [nV]
-            ret.append_data(3, cycle_number)
 
         if cycle_number != self._cycle_number:
             # notify cycle_number change

python/biopro/devlib/device.py

@@ -651,9 +651,17 @@ class DeviceInstruction:
     VIS_DEVICE_DONE = 0x20
     """identify device done"""
 
+    VIS_CC_ZERO = 0x40
+
+    VIS_ASK = 0x30
+    """ask in virtual instruction"""
+
     VIS_STI = 0xC0
     """stimulation on virtual instruction"""
 
+    VIS_FUH = 0x90
+    """flush virtual instruction"""
+
     VIS_INT = 0x60
     """interrupt virtual instruction"""
 
@@ -724,6 +732,7 @@ class DeviceCommonInstruction:
     STOP_STIMULATE = "stop_stimulate"
     VIS_DEVICE_DETECT = 'VIS_DEVICE_DETECT'
     VIS_DEVICE_DONE = 'VIS_DEVICE_DONE'
+    VIS_CC_ZERO = 'VIS_CC_ZERO'
     CIS_VOLT = 'CIS_VOLT'
     CIS_VERSION = 'CIS_VERSION'
 
@@ -738,15 +747,19 @@ class DeviceCommonInstruction:
         elif instruction == cls.START:
             return '_data_format("TDC4VAF2")', '_notify(True)', 'VIS_STI', '_sync(True)'
         elif instruction == cls.INTERRUPT:
-            return '_notify(False)', 'VIS_INT', '_sync(False)'
+            return '_sync(False)', '_notify(False)', 'VIS_INT'
         elif instruction == cls.CLOSE:
             return '_sync(False)', '_notify(False)', 'VIS_INT'
+        elif instruction == cls.FLUSH:
+            return 'VIS_FUH',
         elif instruction == cls.CALL:
             return 'VIS_CAL',
         elif instruction == cls.VIS_DEVICE_DETECT:
             return 'VIS_DEVICE_DETECT',
         elif instruction == cls.VIS_DEVICE_DONE:
             return 'VIS_DEVICE_DONE',
+        elif instruction == cls.VIS_CC_ZERO:
+            return 'VIS_CC_ZERO',
         elif instruction == cls.RECORD:
             return 'VIS_STARTR',
         elif instruction == cls.RECORD_ALL:

python/biopro/devlib/domain.py

@@ -4,7 +4,6 @@ from biopro.util.text import part_suffix
 from . import *
 from .expression import *
 
-import json
 
 class DeviceParameterError(RuntimeError):
     __slots__ = ()
@@ -310,8 +309,6 @@ class ParameterValueDomain(ParameterDomain, metaclass=abc.ABCMeta):
                 return f
 
     def valid_para(self, value: Any) -> bool:
-        if isinstance(value, list):
-            return True
         f, t = self.range
         return f <= float(value) < t
 
@@ -492,12 +489,8 @@ class ParameterCollectionValueOperator(metaclass=abc.ABCMeta):
 
     @classmethod
     def parse(cls, expr: Union[int, str]) -> 'ParameterCollectionValueOperator':
-        # parse epression then create value_operator
         if isinstance(expr, int):
             return SingleValueOperator(None, expr)
-        
-        elif isinstance(expr, list):
-            return CollectValueOperator((0, len(expr)), expr)
 
         elif expr == '*':
             return AddAllValueOperator
@@ -505,10 +498,6 @@ class ParameterCollectionValueOperator(metaclass=abc.ABCMeta):
         elif expr == ':=':
             return CollectValueOperator((None, None), [])
 
-        elif '[' in expr and ']' in expr:
-            v = json.loads(expr)
-            return CollectValueOperator((0, len(v)), v)
-
         elif '=' in expr:
             a, v = part_suffix(expr, '=')
 
@@ -519,7 +508,6 @@ class ParameterCollectionValueOperator(metaclass=abc.ABCMeta):
                     return CollectValueOperator((None, None), v)
 
                 else:
-                    # get list length (old way)
                     a, b = part_suffix(a, ':')
                     a = int(a) if len(a) else None
                     b = int(b) if len(b) else None
@@ -614,8 +602,8 @@ class ParameterCollectionDomain(ParameterDomain, metaclass=abc.ABCMeta):
     def __init__(self, domain: ParameterDomain):
         super().__init__()
 
-        # if isinstance(domain, ParameterCollectionDomain):
-        #     raise RuntimeError('cannot compose with parameter collection domain')
+        if isinstance(domain, ParameterCollectionDomain):
+            raise RuntimeError('cannot compose with parameter collection domain')
 
         self._domain = domain
 
@@ -737,7 +725,6 @@ class ParameterListDomain(ParameterCollectionDomain):
         if oper == AddAllValueOperator:
             raise ValueError("list parameter cannot accept '*' (all) value")
 
-        # d: domain, sz: lsit length, i: slice(a, b), v: list value
         d = self.element_domain
         sz = len(target)
         i = oper.index(sz)

python/biopro/devlib/encoder.py

@@ -119,10 +119,7 @@ class DeviceConfigurationEncoder:
                 e.write(b'L\0')
 
             else:
-                parameter_type = cls._value_type(max(value))
-                for v in value:
-                    if isinstance(v, int) and v < 0:
-                        parameter_type = parameter_type.lower()
+                parameter_type = cls._value_type(value[0])
                 e.write(b'L')
                 e.write(parameter_type.encode())
                 e.u8(sz)
@@ -156,8 +153,7 @@ class DeviceConfigurationEncoder:
         if isinstance(value, bool):
             e.u8(1 if value else 0)
 
-        elif isinstance(value, str) or isinstance(value, list):
-            value = str(value)
+        elif isinstance(value, str):
             e.encode_string(value)
 
         elif isinstance(value, int):
@@ -174,7 +170,7 @@ class DeviceConfigurationEncoder:
         if isinstance(value, bool):
             return '?'
 
-        elif isinstance(value, str) or isinstance(value, list):
+        elif isinstance(value, str):
             return 'p'
 
         elif isinstance(value, int):

python/biopro/devlib/instruction.py

@@ -283,7 +283,6 @@ class InternalInstruction(SingleInstruction):
     PREDEFINED_SET = '_set'
     PREDEFINED_CDR = '_cdr'
     PREDEFINED_DISABLE_CACHE = '_disable_cache'
-    PREDEFINED_IDLE = '_idle'
 
     PREDEFINED = (
         PREDEFINED_SLEEP,
@@ -295,7 +294,6 @@ class InternalInstruction(SingleInstruction):
         PREDEFINED_SET,
         PREDEFINED_CDR,
         PREDEFINED_DISABLE_CACHE,
-        PREDEFINED_IDLE,
     )
 
     __slots__ = ('_expr', '_para')
@@ -1270,15 +1268,14 @@ class InstructionTable(DictNode['Instruction']):
                          instruction: str):
         """call instruction. chain context with :class:`DeviceInternalInstructionScope`
 
-        :param master: DeviceManager
-        :param device: CompletedDevice
+        :param master: master device
+        :param device: device
         :param context: scope
         :param instruction: instruction name
         :raises InstructionNotFound: If instruction not found.
         """
 
         try:
-            # ex. start 
             ins = self[instruction]
 
         except KeyError as e:
@@ -1287,7 +1284,6 @@ class InstructionTable(DictNode['Instruction']):
         else:
             context = context.chain(InstructionTableScope(self))
 
-            # ex. _data_format, _sync, _notify
             for single in ins.eval_instruction(context):
                 if isinstance(single, InternalInstruction):
                     if not single.handle_internal_instruction(master, device, context):

python/biopro/devlib/library.py

@@ -510,10 +510,9 @@ class DeviceParameter(JsonSerialize):
         :param para: parameter name
         :param oper: operator expression
         """
-        # parse operator return CollectValueOperator instance
         if not isinstance(oper, ParameterCollectionValueOperator):
             oper = ParameterCollectionValueOperator.parse(oper)
-        
+
         table = self._library.parameter_table
         info = table[para]
         domain = info.domain
@@ -529,7 +528,6 @@ class DeviceParameter(JsonSerialize):
             old = list(target)
 
         try:
-            # replace target with new oper
             domain.oper_para(target, oper, self._context)
         except RuntimeError as e:
             raise IllegalParameterValueError(para, str(oper)) from e
@@ -968,7 +966,7 @@ class CompletedDevice(Device):
     """
     __slots__ = ('_master', '_device_id', '_device', '_library', '_context',
                  '_parameter', '_configuration', '_lock', '_feature_mask',
-                 '_cache_battery', '_cache_battery_timestamp', '_coeff', '_status', '_occupied_by_project')
+                 '_cache_battery', '_cache_battery_timestamp', '_coeff')
 
     def __init__(self, master: MasterDevice, library: DeviceLibrary, device_id: int, device: Device):
         """
@@ -978,17 +976,11 @@ class CompletedDevice(Device):
         :param device_id: device id
         :param device: slave device implementation
         """
-        # DeviceManager
         self._master = master
         self._device = device
         self._device_id = device_id
         self._library = library
 
-        # device status ( 0: idle, 1: working, 2: error, 3: power off)
-        self._status = 0
-        # device be occupied by project
-        self._occupied_by_project = None
-
         # context
         s1 = library.constant
         s2 = DeviceScope(self)
@@ -1016,10 +1008,6 @@ class CompletedDevice(Device):
     def device_id(self) -> int:
         return self._device_id
 
-    @property
-    def memory_board(self) -> int:
-        return self._device_id
-
     @property
     def device_name(self) -> str:
         return self._device.device_name
@@ -1032,10 +1020,6 @@ class CompletedDevice(Device):
     def mac_address(self) -> ADDRESS:
         return self._device.mac_address
 
-    @property
-    def mac_address_in_str(self) -> str:
-        return ':'.join('{:02x}'.format(b) for b in self._device.mac_address).upper()
-
     @property
     def device(self) -> Device:
         return self._device
@@ -1072,26 +1056,11 @@ class CompletedDevice(Device):
         return self._library
 
     # device lock
+
     @property
     def lock(self) -> DeviceLock:
         return self._lock
 
-    @property
-    def status(self) -> int:
-        return self._status
-    
-    @status.setter
-    def status(self, new_status):
-        self._status = new_status
-
-    @property
-    def occupied_by_project(self) -> str:
-        return self._occupied_by_project
-    
-    @occupied_by_project.setter
-    def occupied_by_project(self, new_occupied_by_project):
-        self._occupied_by_project = new_occupied_by_project
-
     # device parameter getter/setter
 
     def parameters(self) -> List[str]:
@@ -1113,13 +1082,6 @@ class CompletedDevice(Device):
         :return: parameter V value
         """
         return self._configuration.get_parameter(name, False)
-    
-    def set_multi_parameters(self, parameter):
-        if len(parameter) == 0:
-            return
-        for (name, value) in parameter[0].items():
-            if name != 'target':
-                self.set_parameter(name, value)
 
     def set_parameter(self, name: str, value: Union[int, str]):
         """replace parameter value with *value*
@@ -1140,11 +1102,6 @@ class CompletedDevice(Device):
                 self._parameter.set_parameter(name, value)
                 # raise RuntimeError('illegal parameter value : ' + value) from e
             else:
-                if name == 'MODE':
-                    if self.library_name.startswith('Elite_EDC') or 'EIS' in self.library_name:
-                        self.set_parameter('CTRL_HIGH_Z_15', self.get_parameter('HIGHZ_TABLE')[value])
-                        self.set_parameter('TIME_DURATION', 0)
-
                 self._parameter.set_parameter(name, value)
 
         on_change = info.on_change
@@ -1153,8 +1110,7 @@ class CompletedDevice(Device):
                 self._master.log_warn('on_change instruction not found : ' + on_change)
 
             else:
-                if self._status == 1:
-                    self.call_instruction(on_change)
+                self.call_instruction(on_change)
 
     # device instruction call
 
@@ -1292,31 +1248,21 @@ class CompletedDevice(Device):
 
     def central_version_get(self) -> Optional[list]:
         return self._device.central_version_get()
-    
-    def save_data_to_subject(self, project, meta, device, subject_id):
-        self._master._handler.save_data_to_subject(project, meta, device, subject_id)
 
     # utility method
 
     def as_json(self) -> JSON_OBJECT:
         return {
-            'id': self.device_id,
-            'name': self.device_name,
-            'status': self._status,
             'device_id':       self.device_id,
             'device_name':     self.device_name,
             'device_address':  list(self.mac_address),
-            'device_status': self._status,
-            'mac_address': self.mac_address_in_str,
-            'memory_board': self.memory_board,
-            'serial_number':   self.serial_number.as_json(),
-            'version':  self.device_version,
             'battery':         self.battery,
             'parent':          self.parent,
             'recording_file_name':      self.recording_file_name,
+            'device_version':  self.device_version,
+            'serial_number':   self.serial_number.as_json(),
             'library_name':    self._library.name,
             'library_version': str(self._library.version),
-            'occupied_by_project': self._occupied_by_project,
             'configuration':   self.configuration.as_json(list_hide=True),
         }
 
@@ -1406,6 +1352,20 @@ class DebugDevice(CompletedDevice):
     def read_command_return_data(self) -> Optional[bytes]:
         return None
 
+    def send_command(self, ins_type: int, ins_oper: int, *instruction: int):
+        length = len(instruction)
+        print('instruction send :',
+              '%02X' % ((ins_type & 0xF0) | (self.device_id & 0x0F)),
+              '%02X' % ((ins_oper & 0xF0) | (length & 0x0F)),
+              ' '.join(map(lambda v: '%02X' % v, instruction)))
+
+    def send_instruction(self, ins_type: int, ins_oper: int, *instruction: int):
+        length = len(instruction)
+        print('instruction send :',
+              '%02X' % ((ins_type & 0xF0) | (self.device_id & 0x0F)),
+              '%02X' % ((ins_oper & 0xF0) | (length & 0x0F)),
+              ' '.join(map(lambda v: '%02X' % v, instruction)))
+
     @property
     def battery(self) -> int:
         return 100

python/biopro/impl/cc2650/cc2650.py

@@ -3697,6 +3697,7 @@ class CC2650Central(LoggerFlag):
 
     def recv(self, timeout: Optional[float] = None) -> Optional[list]:
         packet = self._recv_byte()
+        # print("packet = ", packet)
 
         if packet is None:
             return None
@@ -3708,8 +3709,6 @@ class CC2650Central(LoggerFlag):
 
     def _recv_byte(self) -> Optional[int]:
         ret = self._recv_bytes(1)
-        # if ret is not None:
-        #     print('packet = {0}'.format(hex(ret[0]).upper()))
         return ret[0] if ret is not None else None
 
     def _recv_bytes(self, size: int = 1) -> Union[None, bytes]:
@@ -3725,28 +3724,27 @@ class CC2650Central(LoggerFlag):
                 return None
 
     def _recv_event(self, timeout: Optional[float] = 1) -> Optional[list]:
-        packet = self._recv_byte()
+        code = self._recv_byte()
+        # print("code = ", code)
 
-        if packet is None:
+        if code is None:
             return None
 
         length = self._recv_byte()
-        len_b = _struct.pack("B", length)
-        data = b''
+        # print('code::',code,'length::',length)
 
         _start = _time()
+        data = b''
 
         while len(data) < length:
-            packets = self._recv_bytes(length - len(data))
-            # hex_packets = ''.join(format(i, '02x') for i in packets)
-            # print("packets = ", hex_packets.upper())
+            ret = self._recv_bytes(length - len(data))
+            # print("ret = ", ret)
 
-            if packets is not None:
-                data += packets
+            if ret is not None:
+                data += ret
             elif timeout is not None and _time() - _start > timeout:
                 raise RecvTimeout()
 
-        data = len_b + data
         self._interface.flush()
         return list(data)
 
@@ -3762,7 +3760,5 @@ class CC2650Central(LoggerFlag):
                     raise RecvTimeout()
 
             else:
-                uart_data_hex = ''.join(format(i, '02X') for i in uart_data)
-                # print('uart_data: 0x{0}'.format(uart_data_hex.upper()))
                 return uart_data
 

python/biopro/impl/ext_mem.py

@@ -24,10 +24,8 @@ def zero_buffer(size: int) -> List[int]:
     return [0] * size
 
 class MultiExtMemSpiInterface(LowLevelHardwareInterface):
-    MEM_INS_MARKED1 = [MEM_INS_WRITE, 0, 2, 0x5A, 0xA5]
-    MEM_INS_MARKED2 = [MEM_INS_WRITE, 0, 6, 0x5A, 0xA5]
-    MEM_INS_MARKED3 = [MEM_INS_WRITE, 0, 10, 0x5A, 0xA5]
-    # MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
+    MEM_INS_MARKED = [MEM_INS_WRITE, 0, 2, 1, 1]
+    MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
 
     __slots__ = ('_selector', '_wait_for_first_data', '_spi', '_tx_buffer_header', '_tx_buffer_data',
                  'pin_busy', 'pin_mem_req', 'pin_mem_sel', 'pin_ram_sel',
@@ -35,7 +33,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                  '_pin_ram_sel_value', '_pin_mem_sel_value', '_pin_mem_req_value',
                  '_read_green_times','_read_red_times',
                  '_elite_data_len', '_mem_header_len', '_mem_tailer_len', '_single_data_len',
-                 '_head_wrong_cnt', '_pin_busy_value')
+                 '_head_wrong_cnt')
 
     def __init__(self,
                  select: Selector,
@@ -44,17 +42,17 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         self._spi = HardwareImplSpiInterface(device,
                                              spi_speed=12_000_000)
 
-        self._elite_data_len = 40
+        self._elite_data_len = 120
         self._mem_header_len = 3
-        self._mem_tailer_len = 6
+        self._mem_tailer_len = 8
         self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
 
         # buffer
-        self._tx_buffer_header = [0] * 64
+        self._tx_buffer_header = [0] * 11
         self._tx_buffer_data = [0] * (self._single_data_len * 10 + 3)
 
         # memory control pin
-        self.pin_busy: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_BZY)
+        self.pin_busy = OutputPin.get_used(P3Pin.MEM_BZY, True)
         self.pin_mem_req = OutputPin.get_used(P3Pin.MEM_REQ, False)
         self.pin_mem_sel = OutputPin.get_used(P3Pin.MEM_RST, True) # MEM_RST -> actually which memory board is assign
         self.pin_ram_sel: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_SEL) # MEM_SEL -> actually is RAM_SEL, which RAM is assign
@@ -62,7 +60,6 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         self._pin_ram_sel_value = [bool(self.pin_ram_sel) for _ in range(Selector.SIZE)]
         self._pin_mem_sel_value = [bool(self.pin_mem_sel) for _ in range(Selector.SIZE)]
         self._pin_mem_req_value = [bool(self.pin_mem_req) for _ in range(Selector.SIZE)]
-        self._pin_busy_value = [bool(self.pin_busy) for _ in range(Selector.SIZE)]
 
         self._read_green_times = 0
         self._read_red_times = 0
@@ -77,8 +74,6 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
     def set_pin_mem_req(self, value: bool):
         channel = self.select
-        # if self._pin_mem_req_value[channel] == value:
-        #     print('last_req_sig[channel] == value', channel, self._pin_mem_req_value[channel], value, datetime.now())
         self.pin_mem_req.output(value)
         self._pin_mem_req_value[channel] = value
 
@@ -99,14 +94,6 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             self._pin_ram_sel_value[channel] = True
         return self._pin_ram_sel_value[channel]
 
-    def get_pin_busy(self):
-        channel = self.select
-        if self.pin_busy.input() == 0:
-            self._pin_busy_value[channel] = False
-        else:
-            self._pin_busy_value[channel] = True
-        return self._pin_busy_value[channel]
-
     @property
     def select(self) -> int:
         return self._selector.channel
@@ -178,56 +165,8 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         print("read red data times", self._read_red_times)
         return data
 
-    def _compare_green_data_addr_and_flag(self, data: Union[bytes, List[int]], device: int):
-
-        green_data_section1 = data[3:7]
-        green_data_section2 = data[7:11]
-        green_data_section3 = data[11:15]
-        green_data_section = []
-
-        if green_data_section1 == green_data_section2:
-            green_data_section = green_data_section1
-
-        elif(green_data_section2 == green_data_section3 or green_data_section1 == green_data_section3):
-            print("green data not equal: = ", data[3:15])
-            print("green data print:", data, device, datetime.now())
-            green_data_section = green_data_section3
-
-        else:
-            print("green data not equal: = ", data[3:15])
-            print("green data print:", data, device, datetime.now())
-            green_data_section = green_data_section3 # use last data
-
-
-        return green_data_section
-
-    def _print_ram_all_data(self):
-        addr = 0
-        red_length = int(7000 / 2)
-        tx_temp = [0] * (red_length + 3)
-
-        while True:
-            tx_temp[0] = MEM_INS_READ
-            tx_temp[1] = ((addr >> 8) & 0xFF)
-            tx_temp[2] = (addr & 0xFF)
-
-            ram_data = []
-            ram_data = self._spi.send_byte(tx_temp)
-            ram_data[0:3] = [255, 255, 255]
-            print(list(ram_data), len(ram_data), addr)
-            addr += len(ram_data) - 3
-
-            if (7000 < addr + len(ram_data)):
-                del ram_data
-                break
-        print()
-
-        return
-
     def recv_memory(self, device: int) -> Optional[bytes]:
-        # self.pin_busy.output(False)
-
-        # print('mem_req==ram_sel,[', self._pin_mem_req_value[device], ',', self._pin_ram_sel_value[device], ']')
+        self.pin_busy.output(False)
 
         rx = []
 
@@ -243,96 +182,105 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
 
             # -------------------------------------read one times-------------------------------------------
-            data = []
-            flag_print = False
-
-            data = self._spi.send_byte(tx_h)
-
-            if (data[0] != 255 or data[1] != 255 or data[2] != 255):
-                self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
-                if (self._head_wrong_cnt[device] <= 5): # print 5 times
-                    print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-                    print(list(data))
-
-            data[0:3] = [255, 255, 255]
-            # ----------------------------------------------------------------------------------------------
-
-
-            # -------------------------------------read two times-------------------------------------------
             # data = []
-            # data_first = []
-            # data_second = []
             # flag_print = False
 
-            # data_first = self._spi.send_byte(tx_h)
-            # data_second = self._spi.send_byte(tx_h)
+            # data = self._spi.send_byte(tx_h)
 
-            # if (data_first[0] != 255 or data_first[1] != 255 or data_first[2] != 255):
+            # if (data[0] != 255 or data[1] != 255 or data[2] != 255):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
-            #     if (self._head_wrong_cnt[device] < 10):
+            #     if (self._head_wrong_cnt[device] <= 5): # print 5 times
             #         print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-            #         print(list(data_first))
+            #         print(list(data[0:7]))
 
-            # if (data_second[0] != 255 or data_second[1] != 255 or data_second[2] != 255):
-            #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
-            #     if (self._head_wrong_cnt[device] < 10):
-            #         print('data_second[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-            #         print(list(data_second))
-
-            # if (data_first[3:] == data_second[3:]):
-            #     data = data_first
-            #     data[0:3] = [255, 255, 255]
-
-            # else:
-            #     data_third = self._spi.send_byte(tx_h)
-            #     print("read data_third", data_third)
-            #     data = self.compare_green_data(data_first, data_second, data_third, len(tx_h))
+            # data[0:3] = [255, 255, 255]
             # ----------------------------------------------------------------------------------------------
 
-            green_data_section = self._compare_green_data_addr_and_flag(data, device)
+            # check comment: tail -f ~/xxx.out | grep -e "data_first" -e "data_second" -e "\[0, 0, 0, 0, 0, 0, 0\]"
+            # -------------------------------------read two times-------------------------------------------
+            data = []
+            data_first = []
+            data_second = []
+            flag_print = False
 
-            length = (green_data_section[0] << 8) | green_data_section[1]
-            header = data[15]
-            elite_data_len = data[17]
+            data_first = self._spi.send_byte(tx_h)
+            data_second = self._spi.send_byte(tx_h)
 
-            if length <= 12:
-                if length < 12:
-                    print("length < 12")
-                    print("green data print:", data, device, datetime.now())
+            if (data_first[0] != 255 or data_first[1] != 255 or data_first[2] != 255):
+                self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
+                if (self._head_wrong_cnt[device] < 10):
+                    print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
+                    print(list(data_first[0:7]))
 
-                # if length == 0:
-                #     self._print_ram_all_data()
+            if (data_second[0] != 255 or data_second[1] != 255 or data_second[2] != 255):
+                self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
+                if (self._head_wrong_cnt[device] < 10):
+                    print('data_second[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
+                    print(list(data_second[0:7]))
 
+            if (data_first[3:] == data_second[3:]):
+                data = data_first
+                data[0:3] = [255, 255, 255]
+
+            else:
+                data_third = self._spi.send_byte(tx_h)
+                print("read data_third", data_third)
+                data = self.compare_green_data(data_first, data_second, data_third, len(tx_h))
+            # ----------------------------------------------------------------------------------------------
+
+            # debug use
+            # green_data = []
+            # green_data = data
+            # print("_[Debug] @ spi green data = ", green_data)
+
+            length = (data[3] << 8) | data[4]
+            header = data[7]
+            elite_data_len = data[9]
+
+            if length <= 4:
+                # print("length <= 4")
+                # print("green data print:", data, device, datetime.now())
                 return None
 
-            if green_data_section[2] != 0xA5 or green_data_section[3] != 0x5A:
+            if data[5] != 0 or data[6] != 0:
                 # give a default length if the data header did not update
-                print("green data: is not [0xA5, 0x5A], = ", data[5:7])
+                length = 7000
+                print("green data: is not [0,0], = ", data[5:7])
                 print("green data print:", data, device, datetime.now())
                 return None
 
-            # print('data=', list(data))
-            # print('Ram:', data[62])
-
-            if (length >= 4000):
+            if (length >= 7000):
                 flag_print = True
                 print("green data: big length:", length)
 
             if (header != 255):
                 flag_print = True
                 print("green data: header is not 255: ", header)
-                # self._print_ram_all_data()
 
             if (elite_data_len != self._elite_data_len):
                 flag_print = True
                 print("green data: length is not", self._elite_data_len, ": ", elite_data_len)
 
             if (flag_print):
-                print("green data print:", data, device, datetime.now(), '\n')
+                print("green data print:", data, device, datetime.now())
 
-            address = 12
+            # neulive
+            # address += len(data) - 11
+            # tx_d = self._tx_buffer_data
+            # red_length = len(tx_d)
+
+            # elite read all data of ram
+            # address = 4
+            # red_length = length - 1 
+            # tx_d = [0] * red_length
+
+            address = 4
             red_length = int(length / 2)
-            tx_d = [0] * (red_length + 3)
+            tx_d = [0] * red_length
+
+            # elite read len(_tx_buffer_data) byte
+            # address = 4
+            # tx_d = self._tx_buffer_data
 
             while True:
                 tx_d[0] = MEM_INS_READ
@@ -371,67 +319,29 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                     address += len(data) - 3
                     del data
 
-            # last_index = 0
-            # print("_[Debug] @ spi recv data rx, ram_select:", self._pin_ram_sel_value[device], ",", datetime.now())
+            # print("_[Debug] @ spi recv data rx = ")
             # for i in range(0, len(rx), self._single_data_len):
-            #     last_index = i
-            #     # print(rx[i:i+self._single_data_len])
-            #     if i == 0:
-            #         print(rx[0:8], 'ram:', rx[47])
-
-            # if last_index != 0:
-            #     print(rx[last_index:last_index+8], 'ram:', rx[last_index+47])
+            #     print(rx[i:i+self._single_data_len])
             # print()
 
             # /* 
             #  * red data formate:
             #  * ramHdr, ramHdr, ramHdr,                                   (3B)
             #  * 255, #, data_length,                                      (3B)
-            #  * data,                                                     (40B)
+            #  * data,                                                     (20B)
             #  * red_wrong, red_retry_cnt, green_wrong, green_retry_cnt,   (4B)
-            #  * check_num,                                                (1B)
+            #  * 255, #, data_length,                                      (3B) 
             #  *                                                                  */
 
-            # read again if check num is wrong
-            index = 0
-            check_number_print = False
-            for i in range(0, len(rx), self._single_data_len):
-                check_sum = sum(rx[i : i + self._single_data_len - 1]) & 0b11111111
-                # print(check_sum, rx[i + self._single_data_len - 1])
-
-                if (check_sum != rx[i + self._single_data_len - 1]):
-                    # print('check_sum wrong, origin value:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
-                    tx_d = [0] * (self._single_data_len + 3)
-                    address = 12 + self._single_data_len * index
-                    tx_d[0] = MEM_INS_READ
-                    tx_d[1] = ((address >> 8) & 0xFF)
-                    tx_d[2] = (address & 0xFF)
-
-                    data = []
-                    data = self._spi.send_byte(tx_d)
-                    data[0:3] = [255, 255, 255]
-                    rx[i : i + self._single_data_len] = data[3:]
-                    print('check_sum wrong, read again:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
-                    check_number_print = True
-                index = index + 1
-
-            if check_number_print:
-                print('check_sum wrong:', device, datetime.now())
-                for i in range(0, len(rx), self._single_data_len):
-                    print(rx[i:i+self._single_data_len])
-                print()
-
             # mark read
-            self._spi.send_byte(self.MEM_INS_MARKED1)
-            self._spi.send_byte(self.MEM_INS_MARKED2)
-            self._spi.send_byte(self.MEM_INS_MARKED3)
+            self._spi.send_byte(self.MEM_INS_MARKED)
 
         except BaseException as e:
             print(e)
 
-        # finally:
-        #     # print("\n")
-        #     self.pin_busy.output(True)
+        finally:
+            # print("\n")
+            self.pin_busy.output(True)
 
         return bytes(rx)
 

python/biopro/impl/interface_uart.py

@@ -28,7 +28,7 @@ class UARTInterface(LowLevelHardwareInterface):
         self._serial = serial.Serial(self._port,
                                      baudrate=self._baudrate,
                                      timeout=0,
-                                     writeTimeout=1)
+                                     writeTimeout=0.01)
         # deprecate function name which change at version 3.0
         self._serial.flushInput()
         self._serial.flushOutput()
@@ -53,8 +53,6 @@ class UARTInterface(LowLevelHardwareInterface):
         :param data: raw byte instruction
         :raises SerialTimeoutException:
         """
-        data_hex = ''.join(format(i, '02X') for i in data)
-        # print('send_byte: 0x{0}'.format(data_hex.upper()))
         self._serial.write(data)
 
     def recv_byte(self, size: int) -> Optional[bytes]:

python/biopro/impl/selector.py

@@ -118,13 +118,13 @@ class Selector:
         self._p2.output(p[2])
 
         # if (value == 4 and self._last_sel != 6):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
         # elif (value == 5 and self._last_sel != 4):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
         # elif (value == 7 and self._last_sel != 5):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
         # elif (value == 6 and self._last_sel != 7):
-        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel, datetime.now())
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
             
         self._last_sel = value
 

python/biopro/project/action.py

@@ -1,34 +0,0 @@
-
-class Action():
-    def __init__(self, action_id, action):
-        self._id: str = action_id
-        self._type: str = action['type']
-        self._target: str = action['target']
-        self._condition : list[str] = action['condition']
-        # self._duration = action.get('duration', None)
-        # self._goto = action.get('goto', None)
-        # self._cycle = action.get('cycle', None)
-    
-    @property
-    def id(self):
-        return self._id
-
-    @property
-    def type(self):
-        return self._type
-    
-    @property
-    def target(self):
-        return self._target
-    
-    @property
-    def condition(self):
-        return self._condition
-    
-    def as_json(self):
-        return {
-            'id': self._id,
-            'type': self._type,
-            'target': self._target,
-            'condition': self._condition
-        }

python/biopro/project/condition.py

@@ -1,145 +0,0 @@
-from datetime import datetime
-from time import time
-
-class Condition():
-    def __init__(self, id, condition):
-        self._id = id
-        self._type = condition['type']
-        self._comparsion = condition['comparsion']
-        self._value = condition['value']
-        self._active = False
-    
-    @property
-    def id(self):
-        return self._id
-
-    @property
-    def type(self):
-        return self._type
-
-    @property
-    def comparsion(self):
-        return self._comparsion
-
-    @property
-    def value(self):
-        return self._value
-    
-    @id.setter
-    def id(self, new_id):
-        self._id = new_id
-    
-    @type.setter
-    def type(self, new_type):
-        self._type = new_type
-
-    @comparsion.setter
-    def comparsion(self, new_comparsion):
-        self._comparsion = new_comparsion    
-    
-    @value.setter
-    def value(self, new_value):
-        self._value = new_value
-
-    def compareWith(self, operator, x, y) -> bool:
-        # print(operator, x, y)
-        cases = {
-            "equal": lambda a, b: a == b,
-            "bigger": lambda a, b: a >= b,
-            "smaller": lambda a, b: a <= b,
-        }
-
-        return cases[operator](x, y)
-
-    def match_or_not(self, **kwargs):
-        # print(self._type, self._comparsion, self._value)
-        return getattr(self, self.type)(**kwargs)
-       
-    def absolute_time(self, **kwargs):
-        # now = int(time())
-        now = round(time(), 1)
-        time_condition = round(self.datetime_to_timestamp(self.str_to_datetime(self._value)))
-
-        return self.compareWith(self.comparsion, now, time_condition)
-
-    def after_project_run(self, **kwargs):
-        project_start_time = kwargs['project_start_time']
-        delay_time = kwargs['delay_time']
-
-        # time_diff = int(time() - project_start_time - delay_time)
-        time_diff = round(time() - project_start_time - delay_time, 1)
-        return self.compareWith(self.comparsion, time_diff, round(int(self._value), 1))
-    
-    def after_task_run(self, **kwargs):
-        # print('relative_time_from_task', kwargs['task_start_time'],kwargs['delay_time'])
-        if len(kwargs['task_start_time']) == 0:
-            return False
-        task = kwargs['self_task']
-        running_task = kwargs['running_task']
-        task_start_time = kwargs['task_start_time'][-1]
-        delay_time = kwargs['delay_time']
-        
-        time_diff = round(time() - task_start_time - delay_time, 1)
-        # print('real_diff', time() - task_start_time - delay_time)
-        # print(task.name, task.uuid, time_diff, round(int(self._value), 1), running_task.name, running_task.uuid)
-        # if round(int(self._value), 1) == 0 and time_diff == 0.1:
-        #     return True
-        if task.uuid != running_task.uuid:
-            return False
-        return self.compareWith('bigger', time_diff, round(int(self._value), 1))
-        # return self.compareWith(self.comparsion, time_diff, round(int(self._value), 1))
-    
-    def device(self, **kwargs):
-        print('device')
-    
-    """ def previous_task_done(self, **kwargs):
-        running_task = kwargs['running_task']
-        if running_task.status == 2 and self._active == False:
-            self._active = True
-            return True
-        return False """
-
-    def previous_task_done(self, **kwargs):
-        running_task = kwargs['running_task']
-        self_task = kwargs['self_task']
-        # if running_task != None and self_task != None:
-        # print('\nprevious_task_done: ', running_task.status, ' ', self._active)
-        if running_task != self_task:
-            if running_task == None:
-                return True
-            if running_task.status == 2 and self._active == False:
-                # self._active = True
-                return True
-        return False
-
-    def until_button_trigger(self, **kwargs):
-        running_task = kwargs['running_task']
-        if running_task != None:
-            if running_task.button_trigger == True:
-                running_task.button_trigger = False
-                return True
-        return False 
-    
-    """ def cycle(self, **kwargs):
-        running_task = kwargs['running_task']
-        self_task = kwargs['self_task']
-        if running_task != self_task:
-            if running_task.status == 2 and self._active == False:
-                # self._active = True
-                return True
-        return False """
-
-    def str_to_datetime(self, time_str):
-        return datetime.strptime(time_str,'%Y-%m-%dT%H:%M')
-
-    def datetime_to_timestamp(self, date):
-        return datetime.timestamp(date)
-
-    def as_json(self):
-        return {
-            'id': self._id,
-            'type': self._type,
-            'comparsion': self._comparsion,
-            'value': self._value,
-            'active': self._active
-        }

python/biopro/project/instruction.py

@@ -1,37 +0,0 @@
-
-class Instruction():
-    def  __init__(self):
-        self._instruction_set = {
-            'set_file_name': {
-                'method': 'update_recording_file_name_info',
-                'arguments': ['file_name']
-            },
-            'set_parent': {
-                'method': 'update_parent_info',
-                'arguments': ['parent']
-            },
-            'set_parameter':{
-                'method': 'set_multi_parameters',
-                'arguments': ['parameter']
-            },
-            'call_instruction': {
-                'method': 'call_instruction',
-                'arguments': ['instruction']
-            },
-        }
-    
-        self._start_instruction = list(map(lambda ins: self._instruction_set[ins] ,['set_file_name', 'set_parent', 'set_parameter', 'call_instruction']))
-        self._stop_instruction = list(map(lambda ins: self._instruction_set[ins] ,['call_instruction']))
-        self._idle_instruction = []
-    
-    @property
-    def start(self) -> list:
-        return self._start_instruction
-    
-    @property
-    def stop(self) -> list:
-        return self._stop_instruction
-
-    @property
-    def idle(self) -> list:
-        return self.idle_instruction

python/biopro/project/project.py

@@ -1,417 +0,0 @@
-import sys
-import json
-import threading
-import logging
-
-from time import time, sleep
-from datetime import datetime
-from collections import deque
-from copy import copy
-from uuid import uuid4
-
-from .task import Task
-from .task_manager import TaskManager
-from .instruction import Instruction
-from biopro.device.manager import DeviceManager
-from biopro.text import *
-
-from biopro.db.base import Session
-from biopro.db.collection import Collection
-
-key_list = {
-  'deviceList': 'device',
-}
-
-class Project(threading.Thread):
-  def __init__(self, project, device_manager: DeviceManager, mqttThread = None, log_verbose = None, name="project"):
-    super(Project, self).__init__(name = name)
-    self._project = project
-    self._device_manager = device_manager
-    self._mqtt_thread = mqttThread
-    self._time_interval = 0.1
-    self._start_time = None
-    self._end_time = None
-
-    self._id = None
-    self._uuid = str(uuid4())
-    self._name = None
-    self._desc = None
-    self._device = None
-    self._complete_device = {}
-    self._status = 0
-
-    self._instruction_set = Instruction()
-    self._stop_flag  = False
-
-    self._task_manager = None
-
-    self._cycle = []
-
-    self._count = 1 #流水號
-
-    self._project_meta_id = -1
-    self._subject = []
-
-    self.log_verbose = log_verbose
-    self._logger = logging.getLogger('project')
-    self._logger.setLevel('DEBUG')
-
-    self._formatter = logging.Formatter('[%(asctime)s.%(msecs)03d] %(message)s', datefmt='%Y-%m-%d %H:%M:%S')
-    self._formatter_with_nothing = logging.Formatter('%(message)s')
-
-    self.setup_project(project)
-    self.setup_device(self._device)
-
-    # create log file handler
-    fh = logging.FileHandler(f'/home/pi/logger/project/{self.uuid}.log', mode="w")
-    fh.setFormatter(self._formatter)
-    self._logger.addHandler(fh)
-
-    default_name = 'admin'
-    default_parent = {"folder": [1]}
-    collection = Collection.find_collection(default_name, default_parent)
-    parent = {"folder": [collection.id]}
-    # create project folder
-    folder_name_duplicate = False
-    if len(self._subject) > 0:
-      folder_name_duplicate = True
-    collection = Collection.create_collection(self.name, parent, folder_name_duplicate)
-    self.setup_collection(collection)
-    
-  def setup_project(self, project):
-    for (key, value) in project.items():
-      if key in key_list.keys():
-        key = key_list[key]
-
-      if key == 'task':
-        self._task_manager = TaskManager(project['task'], project['cycle'])
-      elif key == 'uuid':
-        pass
-      else:
-        setattr(self, key, value)
-      
-  def setup_device(self, device_list):
-    for device in device_list:
-      mac_address = device_list[device]['pair']
-      complete_device = self._device_manager.get_device(mac_address)
-      complete_device.occupied_by_project = self._uuid
-      self._complete_device[device] = complete_device
-    
-  def setup_collection(self, collection):
-    self._task_manager.create_collection(collection)
-
-  @property
-  def id(self) -> int:
-    return self._id
-  
-  @id.setter
-  def id(self, new_id):
-    self._id = new_id
-
-  @property
-  def project_meta_id(self) -> int:
-    return self._project_meta_id
-  
-  @project_meta_id.setter
-  def project_meta_id(self, new_project_meta_id):
-    self._project_meta_id = new_project_meta_id
-
-  @property
-  def subject(self) -> object:
-    return self._subject
-  
-  @subject.setter
-  def subject(self, new_subject):
-    self._subject = new_subject
-  
-  @property
-  def uuid(self) -> str:
-    return self._uuid
-  
-  @uuid.setter
-  def uuid(self, new_uuid):
-    self._uuid = new_uuid
-
-  @property
-  def name(self) -> str:
-    return self._name
-  
-  @name.setter
-  def name(self, new_name):
-    self._name = new_name
-  
-  @property
-  def cycle(self) -> list:
-    return self._cycle
-  
-  @cycle.setter
-  def cycle(self, new_cycle):
-    self._cycle = new_cycle
-
-  @property
-  def desc(self) -> str:
-    return self._desc
-  
-  @desc.setter
-  def desc(self, new_desc):
-    self._desc = new_desc
-  
-  @property
-  def status(self) -> str:
-    return self._status
-  
-  @status.setter
-  def status(self, new_status):
-    self._status = new_status
-
-  @property
-  def device(self) -> list:
-    return self._device
-  
-  @device.setter
-  def device(self, new_device):
-    self._device = new_device
-  
-  @property
-  def task_list(self):
-    return self._task_manager.export_task_list
-
-  @property
-  def mqtt_thread(self):
-    return self._mqtt_thread
-
-  @property
-  def running_task(self):
-    return self._task_manager.running_task
-
-  def get_device_parameter_set(self, device_address):
-    parameter_set = self._task_manager.running_task.parameter_set
-    return next((x for x in parameter_set if parameter_set[x]['target'] == device_address), None)
-
-  def get_cycle(self, task):
-      for index, _cycle in enumerate(self.cycle):
-        if task.uuid in _cycle['range']:
-          return _cycle
-
-  def run(self):
-      # project status change running (1)
-      self._status = 1
-      # save start time
-      self._start_time = time()
-
-      # saving & broadcast message
-      self._logger.info('Project ' + self.name + ' start')
-      self.log_verbose('Project ' + self.name + ' start')
-      self.mqtt_thread.broadcast_command('project:' + self._name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-      
-      while not self._stop_flag :
-        # check running task first
-        delay_time = 0
-        check_list = copy(self._task_manager.check_list)
-
-        for task in check_list:
-          if task != None:
-            now = time()
-
-            match_condition_list = task.check_condition(
-              project_start_time = self._start_time,
-              delay_time = delay_time,
-              running_task= self._task_manager.running_task,
-              previous_task =  self._task_manager.prev_task,
-              self_task = task
-            )
-
-            for condition in match_condition_list:
-              match_action_list = task.get_match_action(condition.id)
-              print('match_action_list', match_action_list, match_action_list)
-              for action in match_action_list:
-                if action.type == 'cycle' and condition.type == 'previous_task_done':
-                  self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-                  self._task_manager.set_running_task(task)
-                  cycle_info = self.get_cycle(task)
-                  if cycle_info['useID'] == False:
-                    self._logger.info(f'---------- Cycle {task.name} Round {cycle_info["count"]} -----------')
-                if action.type == 'cycle' and condition.type == 'until_button_trigger':
-                  self._task_manager.running_task.stop()
-                  self._logger.info(f'---------- Cycle {cycle_info["id"]} Round {cycle_info["count"]} -----------')
-
-                if self._task_manager.running_task != None:
-                  if self._task_manager.running_task.uuid == task.uuid and action.type == 'cycle' and condition.type == 'after_task_run':
-                    self._task_manager.running_task.stop()
-
-                if action.type == 'start':
-                  if task.status != 1:
-                    self._task_manager.set_running_task(task)
-                    self._logger.info(f'Task {str(self._task_manager.running_task.name)} start')
-                    self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-                # elif action.type == 'stop':
-                  # self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-                  # self._count += 1
-                  # if self.check_running_task_not_run() == True:
-                  #   self._task_manager.running_task.stop()
-
-                elif action.type == 'idle':
-                  self._task_manager.running_task.stop()
-                # elif action.type == 'stop':
-                #   self._task_manager.running_task.stop()
-
-                instruction_set = None
-
-                if action.target is not None:
-                  device = self._complete_device[action.target]
-                  if ((action.type == 'start' and device.status == 0) or (action.type == 'stop' and device.status == 1)):
-                    self._logger.info(f'Device {device.mac_address_in_str} {action.type}')
-                    self.log_verbose('Project' + self.name + 'Task ' + task.name + ' match_condition ' + condition.type + ' trigger_action ' + action.type + ' ' + str(action.target))
-                    task_info = task.get_task_info(action)
-                    instruction_set = getattr(self._instruction_set, action.type, None)
-                    
-                    # 檔名修正
-                    # device
-                    task_info['file_name'] += '#' + device.mac_address_in_str[12:].upper()
-                    # 流水號
-                    task_info['file_name'] += '#' + str(self._count)
-
-                    # 添加cycle資訊
-                    if len(self.cycle) > 0:
-                      index = self._task_manager.get_index_by_task(task)
-                      # get list of cycle determine by index of task
-                      filtered = list(filter(lambda info: self._task_manager.get_index_by_uuid(info['range'][0]) < index and self._task_manager.get_index_by_uuid(info['range'][1]) > index, self.cycle))
-                      
-                      if len(filtered) == 0:
-                        pass
-                      elif len(filtered) == 1:
-                        if filtered[0]['useID'] == True:
-                          task_info['file_name'] += '#' + str(filtered[0]['id'])
-                        else:
-                          task_info['file_name'] += '#' + str(filtered[0]['name']) + '-' + str(filtered[0]['count'])
-                      else:
-                        # if multi cycle, then sort by range from task index to cycle start index, then loop concat filename
-                        filtered.sort(key=lambda info: abs(self._task_manager.get_index_by_uuid(info['range'][0]) - index))
-                        for cycle_info in filtered:
-                          if cycle_info['useID'] == True:
-                            task_info['file_name'] += '#' + str(cycle_info['id'])
-                          else:
-                            task_info['file_name'] += '#' + str(cycle_info['name']) + '-' + str(cycle_info['count'])
-                    self.log_verbose('file name ' + task_info['file_name'])
-                    
-                  if instruction_set != None and self.get_device_parameter_set(action.target) != None:
-                    for instruction in instruction_set:
-                      print('instruction 1', device, instruction, datetime.now())
-                      args = list(map(lambda arg: task_info[arg], instruction['arguments']))
-                      target=getattr(device, instruction['method'])(*args)
-                      print('instruction 2', device, instruction, datetime.now())
-                    if (action.type == 'stop'):
-                      if (len(self._subject) > 0):
-                         target=getattr(device, "save_data_to_subject")(self.id, self.project_meta_id, device, self._subject[0])
-                    if action.type == 'start':
-                      self._count += 1
-            
-            delay_time += (time() - now)
-
-        # check task not running then stop
-        if self.check_running_task_not_run() == True:
-          # self._logger.info(f'taskType {self._task_manager.running_task.name} {self._task_manager.running_task.type}')
-          if self._task_manager.running_task.type == '':
-            self._logger.info(f'Task {self._task_manager.running_task.name} stop')
-            self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-          self._task_manager.running_task.stop()
-        
-        # check project done then close project
-        if self.check_project_done() == True:
-          print('project stop at', datetime.now())
-          self.stop()
-        
-        if self._time_interval - delay_time > 0:
-          sleep(self._time_interval - delay_time)
-
-  def pause(self):
-    # TODO
-    pass
-
-  def stop(self):
-    for device in self._complete_device:
-      self._complete_device[device].occupied_by_project = None
-    self._task_manager.running_task.stop()
-    self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-    self._status = 2
-    self._end_time = time()
-    self._stop_flag  = True
-    self._logger.info('Project ' + self.name + ' stop')
-    self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-
-  def close(self):
-    for device in self._complete_device:
-      self._complete_device[device].occupied_by_project = None
-    self._status = 2
-    self._end_time = time()
-    self._stop_flag  = True
-    self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
-
-  def check_project_done(self):
-    for task in self._task_manager.task_list:
-      # if task never start or still task is running then reject 
-      if task.status == 1 or task.status == -1:
-        return False
-    return True
-  
-  def set_content(self, content):
-    self.running_task.button_trigger = True
-  
-  def set_cycle(self, index, content):
-    # change cycle name
-    for key in content:
-      self.cycle[index][key] = content[key]
-
-    # change task name
-    # self._task_manager.get_task_by_uuid(self.cycle[index]['range'][0]).name = content['name']
-    # self._task_manager.get_task_by_uuid(self.cycle[index]['range'][1]).name = content['name']
-  
-  def check_running_task_not_run(self):
-    # if no running task
-    if self._task_manager.running_task == None:
-      return False
-    
-    # if running is cycle then no need to stop by device
-    if self._task_manager.running_task.type == 'cycle':
-      return False
-    
-    for key in self._task_manager.running_task.action:
-      # print('action key', key, self._task_manager.running_task, self._task_manager.running_task.action[key])
-      if len(self._task_manager.running_task.parameter_set) == 0 and self._task_manager.running_task.action[key]['type'] == 'stop':
-        return False
-      if len(self._task_manager.running_task.parameter_set) == 0 and self._task_manager.running_task.action[key]['type'] == 'idle':
-        return False
-      
-    for device in self._task_manager.running_task.device:
-      if self._complete_device[device].status == 1:
-        return False
-    return True
-  
-  def as_json(self):
-    running_task = None
-    if self._task_manager.running_task is not None:
-      running_task = self._task_manager.running_task.as_json()
-    data = {
-      'id': self._id,
-      'name': self._name,
-      'uuid': self._uuid,
-      'desc': self._desc,
-      'status': self._status,
-      'device': self._device,
-      'task': self.task_list,
-      'running_task': running_task,
-      'cycle': self._cycle,
-      'count': self._count,
-    }
-    return data
-  
-  def info_pass_data_server(self):
-    if self._task_manager.running_task is not None:
-      running_task = self._task_manager.running_task.as_json()
-    data = {
-      'project': self._uuid,
-      'task': running_task,
-      'cycle': self._cycle,
-      'serial_number': self._count,
-    }
-    return data

python/biopro/project/project_manager.py

@@ -1,48 +0,0 @@
-from io import StringIO
-from json import loads as json_parse, dumps as _json_stringify
-from typing import Dict, Optional, Any
-import paho.mqtt.client as mqtt
-from .project import Project
-from biopro.device.manager import DeviceManager
-
-def json_stringify(o: Any) -> str:
-    return _json_stringify(o, separators=(',', ':'))
-
-class ProjectManager():
-    def __init__(self, device_manager: DeviceManager, mqtt_thread=None, log_verbose = None) :
-        self._project_list = []
-        self._mqtt_thread =  mqtt_thread
-        self._device_manager = device_manager
-        self.log_verbose = log_verbose
-    
-    def create(self, project):
-      new_project = Project(project, self._device_manager, self._mqtt_thread, self.log_verbose)
-      self._project_list.append(new_project)
-      return new_project
-
-    def remove(self, index):
-      self._project_list[index].stop()
-      del self._project_list[index]
-
-    def get(self, project_uuid = None):
-      if project_uuid == None:
-        return self._project_list
-      else:
-        for project in self._project_list:
-          if project.uuid == project_uuid:
-            return project
-
-    def run_project(self, project):
-      project.start()
-
-    def stop_project(self, project):
-      _project = self.get(project)
-      _project.stop()
-    
-    def set_project(self, project_uuid, content):
-      _project = self.get(project_uuid)
-      _project.set_content(content)
-    
-    def set_project_cycle(self, project_uuid, index, content):
-      _project = self.get(project_uuid)
-      _project.set_cycle(index, content)

python/biopro/project/task.py

@@ -1,312 +0,0 @@
-from typing import List
-from .condition import Condition
-from .action import Action
-from time import time
-from datetime import datetime
-
-key_list = {
-  'deviceList': 'device',
-  'parameterSet': 'parameter_set'
-}
-
-class Task:
-  def __init__(self, task):
-    self._id = None
-    self._uuid = None
-    self._type = None
-    self._name = None
-    self._parent = None
-    self._cycle = None
-    self._cycle_count = 0
-    self._cycle_next = None
-    self._cycle_next_uuid = None
-    self._device = None
-    self._event = None
-    self._trigger = None
-    self._parameter_set = None
-    self._condition = None
-    self._action = None
-    # -1: init 0: start(idle), 1: run, 2: close(idle)
-    self._status = 0
-    self._next = None
-
-    # action & condition info
-    self._condition_list: List[Condition] = []
-    self._action_list: List[Action] = []
-    self._instruction_list = []
-    self._record_list = []
-
-    # time info
-    self._start_time = []
-    self._idle_time = []
-    self._end_time = []
-    self._period = None
-
-    # trigger info
-    self._button_trigger = False
-
-    self.load_task(task)
-  
-  def load_task(self, task) -> None:
-    # update task attribute
-    for key, value in task.items():
-      if key in key_list.keys():
-        key = key_list[key]
-      if key == 'condition':
-        self.update_condition_list(value)
-      if key == 'action':
-        self.update_action_list(value)
-      # print(key, value)
-      setattr(self, key, value)
-    
-  def update_condition_list(self, condition_dict):
-    self._condition_list.clear()
-    for key, condition in condition_dict.items():
-      self._condition_list.append(Condition(key, condition))
-    
-  def update_action_list(self, action_dict):
-    self._action_list.clear()
-    for key, action in action_dict.items():
-      self._action_list.append(Action(key, action))
-
-  @property
-  def id(self) -> str:
-    return self._id
-  
-  @id.setter
-  def id(self, new_id):
-    self._id = new_id
-  
-  @property
-  def uuid(self) -> str:
-    return self._uuid
-  
-  @uuid.setter
-  def uuid(self, new_uuid):
-    self._uuid = new_uuid
-
-  @property
-  def type(self):
-    return self._type
-  
-  @type.setter
-  def type(self, new_type):
-    self._type = new_type
-  
-  @property
-  def name(self):
-    return self._name
-  
-  @name.setter
-  def name(self, new_name):
-    self._name = new_name
-
-  @property
-  def parent(self):
-    if self._parent == None:
-      return  {"folder": [2]}
-    return self._parent
-  
-  @parent.setter
-  def parent(self, new_parent):
-    self._parent = new_parent
-
-  @property
-  def cycle(self) -> int:
-    return self._cycle
-  
-  @cycle.setter
-  def cycle(self, new_cycle):
-    self._cycle = new_cycle
-
-  # TODO: not sure needed?
-  @property
-  def cycle_count(self) -> int:
-    return self._cycle_count
-  
-  @cycle_count.setter
-  def cycle_count(self, new_cycle_count):
-    self._cycle_count = new_cycle_count
-    
-  @property
-  def cycle_next(self) -> str:
-    return self._cycle_next
-  
-  @cycle_next.setter
-  def cycle_next(self, new_cycle_next):
-    self._cycle_next = new_cycle_next
-
-  @property
-  def cycle_next_uuid(self) -> str:
-    return self._cycle_next_uuid
-  
-  @cycle_next_uuid.setter
-  def cycle_next_uuid(self, new_cycle_next_uuid):
-    self._cycle_next_uuid = new_cycle_next_uuid
-  
-  @property
-  def device(self) -> dict:
-    return self._device
-  
-  @device.setter
-  def device(self, new_device):
-    self._device = new_device
-  
-  @property
-  def event(self) -> list:
-    return self._event
-  
-  @event.setter
-  def event(self, new_event):
-    self._event = new_event
-
-  @property
-  def trigger(self) -> list:
-    return self._trigger
-  
-  @trigger.setter
-  def trigger(self, new_trigger):
-    self._trigger = new_trigger
-  
-  @property
-  def parameter_set(self) -> list:
-    return self._parameter_set
-  
-  @parameter_set.setter
-  def parameter_set(self, new_parameter_set):
-    self._parameter_set = new_parameter_set
-
-  @property
-  def condition(self) -> list:
-    return self._condition
-  
-  @condition.setter
-  def condition(self, new_condition):
-    self._condition = new_condition
-  
-  @property
-  def action(self) -> list:
-    return self._action
-  
-  @action.setter
-  def action(self, new_action):
-    self._action = new_action
-
-  @property
-  def status(self) -> str:
-    return self._status
-  
-  @status.setter
-  def status(self, new_status):
-    self._status = new_status
-  
-  @property
-  def next(self) -> str:
-    return self._next
-  
-  @next.setter
-  def next(self, new_next):
-    self._next = new_next
-  
-  @property
-  def instruction_list(self) -> List:
-    return self._instruction_list
-  
-  @property
-  def start_time(self) -> List:
-    return self._start_time
-  
-  @property
-  def end_time(self) -> List:
-    return self._end_time
-  
-  @property
-  def button_trigger(self) -> List:
-    return self._button_trigger
-  
-  @button_trigger.setter
-  def button_trigger(self, button_trigger):
-    self._button_trigger = button_trigger
-  
-  def new_start_time(self):
-    self._start_time.append(time())
-  
-  def new_end_time(self):
-    self._end_time.append(time())
-    
-  def get_parameter_set_by_device(self, device):
-     return [parameter_set for parameter_set in self.parameter_set.values() if device == parameter_set['target']]
-
-  def get_parameter(self, name_or_value, device):
-    name_list = []
-    value_list = []
-    for parameter in self.get_parameter_set_by_device(device):
-      for key, value in parameter.items():
-        if key != 'target':
-          name_list.append(key)
-          value_list.append(str(value))
-
-    return '|'.join(name_list) if name_or_value == 'name' else '|'.join(value_list)
-  
-  def run(self):
-    print(self._name, 'run at', datetime.now())
-    self._status = 1
-    self._start_time.append(time())
-  
-  def start(self):
-    self.status = 1
-  
-  def stop(self):
-    self.status = 2
-  
-  def reset(self):
-    self.status = -1
-    # self.status = 0
-
-  def get_match_action_list(self, match_condition_list):
-    return map(lambda condition: [x for x in self._action_list if condition.id in x.get_condition_list()], match_condition_list)
-  
-  def get_match_action(self, condition_id):
-    return [action for action in self._action_list if condition_id in action.condition]
-
-  def do_action(self, action): 
-    for instruction in action.get_instruction_list():
-      self._instruction_list.append(instruction)
-
-  def check_condition(self, **kwargs):
-    kwargs['task_start_time'] = self._start_time
-    return [condition for condition in self._condition_list if  condition.match_or_not(**kwargs)]
-  
-  def get_task_info(self, action):
-    _type = action.type
-    if _type == 'stop':
-      _type = 'interrupt'
-
-    return {
-      'device': action.target,
-      'parameter': self.get_parameter_set_by_device(action.target),
-      'file_name': self._name,
-      'parent': self.parent,
-      'instruction': _type
-    }
-  
-  def as_json(self):
-    return {
-      'id': self.id,
-      'name': self.name,
-      'parent': self.parent,
-      'type': self.type,
-      'uuid': self.uuid,  
-      'cycle': self.cycle,
-      'cycle_count': self.cycle_count,
-      'cycle_next': self.cycle_next,
-      'cycle_next_uuid': self.cycle_next_uuid,
-      'device': self.device,
-      'event': self.event,
-      'trigger': self.trigger,
-      'parameter_set': self.parameter_set,
-      'condition': self.condition,
-      'action': self.action,
-      'status': self.status,
-      'next': self.next,
-    }

python/biopro/project/task_manager.py

@@ -1,181 +0,0 @@
-from json import loads as json_parse, dumps as _json_stringify
-from socket import if_nametoindex
-from typing import Dict, List, Optional, Any
-from xml.dom.expatbuilder import parseString
-import paho.mqtt.client as mqtt
-from biopro.text import *
-from .task import Task
-from biopro.db.collection import Collection
-
-_RUNTIME_COMPILE = False
-
-def json_stringify(o: Any) -> str:
-    return _json_stringify(o, separators=(',', ':'))
-
-class TaskManager():
-    def __init__(self, task_list, cycle_list):
-      self._task_list = []
-      self._next_task = []
-      self._prev_task = None
-      self._running_task = None
-      self._cycle_list = cycle_list
-      
-      self.load_task_list(task_list)
-
-      # self.set_running_task(self._task_list[0])
-      # self._running_task.run()
-      self._next_task.append(self._task_list[0])
-    
-    @property
-    def task_list(self):
-      return self._task_list
-
-    @property
-    def export_task_list(self):
-      return [d.as_json() for d in self._task_list]
-
-    @property
-    def prev_task(self):
-      return self._prev_task
-    
-    @property
-    def running_task(self):
-      return self._running_task
-    
-    @property
-    def next_task(self):
-      return self._next_task
-
-    def get_task_by_index(self, index):
-      return self._task_list[index]
-
-    def get_task_by_uuid(self, uuid):
-      return next((x for x in self.task_list if x.uuid == uuid), None)
-    
-    def get_index_by_task(self, task):
-      return next((i for i, x in enumerate(self.task_list) if x.uuid == task.uuid), None)
-    
-    def get_index_by_uuid(self, uuid):
-      return next((i for i, x in enumerate(self.task_list) if x.uuid == uuid), None)
-    
-    def check_task_is_cycle_start(self, task):
-      for index, cycle in enumerate(self._cycle_list):
-        if cycle['range'][0] == task.uuid:
-          return index
-
-    def check_task_is_cycle_end(self, task):
-      for index, cycle in enumerate(self._cycle_list):
-        if cycle['range'][1] == task.uuid:
-          return index
-
-    def check_task_in_cycle(self, task_index):
-      for index, cycle in enumerate(self._cycle_list):
-        if self.get_index_by_uuid(cycle['range'][0]) <= task_index:
-          if self.get_index_by_uuid(cycle['range'][1]) >= task_index:
-            return True
-      return False
-
-    @property
-    def check_list(self):
-      return [self._running_task, *self._next_task]
-    
-    @property
-    def check_list(self):
-      return [self._running_task, *self._next_task]
-    
-    def load_task_list(self, task_list):
-      for task in task_list:
-        task = Task(task) 
-        self._task_list.append(task)
-    
-    # original version
-    """ def set_running_task(self, task):
-      try:
-        # if there is task running & same task active ,then reject
-        if self._running_task != None and self._running_task.uuid == task.uuid:
-          return False
-
-        # save running task
-        self._prev_task = self._running_task
-        # clear next task list
-        self._next_task.clear()
-        self._running_task = task
-        self._running_task.run()
-
-        if self._prev_task != None:
-          # if previous task is still running, then need to close
-          if self._prev_task.status == 1:
-            self._prev_task.stop()
-          print('prev', 'run', self._prev_task.name, self._running_task.name)
-
-        for task_uuid in self._running_task.next:
-          _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
-          if _task != None:
-            self._next_task.append(_task)
-      except RuntimeError as e:
-        print(e) """
-      
-    def set_running_task(self, task):
-      try:
-        # if there is task running & same task active ,then reject
-        if self._running_task != None and self._running_task.uuid == task.uuid:
-          return False
-
-        # save task
-        self._prev_task = self._running_task
-        # clear next task list
-        self._next_task.clear()
-        # set task to running_task
-        self._running_task = task
-        self._running_task.run()
-
-        # if previous task is still running, then need to close
-        if self._prev_task != None:
-          if self._prev_task.status == 1:
-            self._prev_task.stop()
-        # if reach cycle end, count < max, then go to cycle start
-        cycle_start_index = self.check_task_is_cycle_start(task)
-        cycle_index = self.check_task_is_cycle_end(task)
-        if cycle_index is None:
-          # print('next', self._running_task.name, self._running_task.next)
-          for task_uuid in self._running_task.next:
-            _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
-            if _task != None:
-              _task.reset()
-              self._next_task.append(_task)
-          # print('self._next_task', self._next_task)
-        else:
-          # print('cycle', self._cycle_list[cycle_index])
-          cycle = self._cycle_list[cycle_index]
-          if int(cycle['count']) < int(cycle['max']):
-            self._next_task.append(self.get_task_by_uuid(cycle['range'][0]))
-            # cycle['count'] += 1
-          else:
-            for task_uuid in self._running_task.next:
-              _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
-              if _task != None:
-                _task.reset()
-                self._next_task.append(_task)
-            # cycle['count'] = 1
-
-        if cycle_start_index != None:
-            cycle = self._cycle_list[cycle_start_index]
-            if int(cycle['count']) < int(cycle['max']):
-              cycle['count'] += 1
-            else:
-              cycle['count'] = 1
-
-      except RuntimeError as e:
-        print(e)
-
-    def get_task(self, task_id):
-      return self._task_list[task_id]
-  
-    def create_collection(self, parent):
-      for index, task in enumerate(self._task_list):
-        if self.check_task_in_cycle(index) == True:
-          if task.type == '':
-            collection = Collection.create_collection(task.name, {"folder": [parent.id]}, False)
-            task.parent = {"folder": [collection.id]}
-        else:
-          task.parent = {"folder": [parent.id]}