[update] project task name rename

This reverts commit cd60e14cbe.

python/biopro/api/controller.py

@@ -18,9 +18,10 @@ class ControllerAPI():
     @staticmethod
     def getByMac(mac_address):
         try:
-            ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
-            if ret.status_code == 200:
-                return ret.json()
+            if mac_address != None:
+                ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
+                if ret.status_code == 200:
+                    return ret.json()
         except (requests.exceptions.ConnectionError, json.decoder.JSONDecodeError) as e:
             print('get controller fail', e)
         return []

python/biopro/controller.py

@@ -1576,6 +1576,11 @@ class ControlAPI(metaclass=Router):
         should handle this exit code and re-run server process.
         """
         raise NotImplementedError()
+    
+    def run_project(self, project) -> bool:
+        print('create_project', project)
+        self._project_manager.create(project)
+        return False
 
 
 # noinspection PyAbstractClass

python/biopro/device/device_cc2650.py

@@ -315,14 +315,6 @@ class CC2650MasterDevice(MasterDevice, metaclass=abc.ABCMeta):
 
         return cls.CC2650_RESET_PIN
 
-    @classmethod
-    def get_uart_irq_pin(cls) -> OutputPin:
-        if cls.CC2650_UART_IRQ is None:
-            cls.CC2650_UART_IRQ = OutputPin.get_used(P3Pin.MEM_RST, initial=True)
-
-        return cls.CC2650_UART_IRQ
-
-
 class CC2650Device(Device):
 
     def __init__(self,
@@ -544,7 +536,7 @@ class CC2650Device(Device):
             self._master.log_warn('device', self.device_id, 'update_battery_info no response')
 
         else:
-            if data is not None and len(data) == 4 :
+            if data is not None and len(data) > 2 :
                 battery = struct.unpack('<H', data[1:3])[0]
                 if battery is not None:
                     self._battery = battery
@@ -955,9 +947,6 @@ class CC2650SingleMasterDevice(CC2650MasterDevice, Synchronized):
 
         self._cc2650.recv_util(..., when=self._cond, timeout=timeout)
 
-    def available_device(self) -> List[int]:
-        return [0]
-
     @synchronized
     def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
         if self._scan_max_time != timeout:
@@ -1442,11 +1431,6 @@ class CC2650MultiMasterDevice(CC2650MasterDevice, Synchronized):
         super().shutdown()
         self._selector.close()
 
-    def available_device(self) -> List[int]:
-        return list(map(lambda it: it[0],
-                        filter(lambda it: it[1] is not None,
-                               enumerate(self._cc2650))))
-
     def get_device(self, device: int) -> Optional[Device]:
         return self._device[device]
 
@@ -1942,10 +1926,8 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         self.log_verbose('reset (hardware)')
 
         pin.output(False)
-        sleep(0.1)
-
+        # sleep(0.001)
         pin.output(True)
-        sleep(0.1)
 
     @synchronized
     def reset_software(self):
@@ -1968,9 +1950,6 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         """initialize cc2650 (master)"""
         pass
 
-    def available_device(self) -> List[int]:
-        return [0]
-
     def scan_send_ins(self):
         # send scan command
         try:
@@ -1986,21 +1965,16 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
             clean_buf = self._cc2650.receive_timeout("20B", timeout=3)
             print("clean_buf = ", clean_buf)
 
-    def cc2650_uart_irq(self):
-        uart_irq = self.get_uart_irq_pin()
-        uart_irq.output(False)
-        sleep(0.001)
-        uart_irq.output(True)
+    # def cc2650_uart_irq(self):
+    #     uart_irq = self.get_uart_irq_pin()
+    #     uart_irq.output(False)
+    #     sleep(0.001)
+    #     uart_irq.output(True)
 
     @synchronized
     def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
-        # if self._scan_max_time != timeout:
-        # self.log_info('set max scan limit time', timeout)
-        # self._scan_max_time = timeout
-
         self._found = found = []
         self._found_with_id = []
-        number_of_device = 0
         hdr_BPHS = [66, 80, 72, 83]
         scan_response: Union[Optional[tuple], Any] = None
 
@@ -2013,39 +1987,13 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         # print('send_scan', bytes(scan_ins))
         self._cc2650.send("bytes", bytes(scan_ins))
 
-        # for wait_scan_response in range(5):
-        #     try:    
-        #         scan_response = self._cc2650.recv_uart(0.2)
-        #     except RecvTimeout:
-        #         if wait_scan_response == 4:
-        #             self.reset_internal()
-        #             self.reset_hardware()
-        #             self._interface.flush()
-        #             return True
-        #         else:
-        #             self.log_info("wait for scan response")
-        #             continue
-
-        #     # check if response is valid
-        #     if scan_response is None:
-        #         if wait_scan_response == 4:
-        #             self.reset_internal()
-        #             self.reset_hardware()
-        #             self._interface.flush()
-        #         else:
-        #             self.log_info("wait for scan response")
-        #             continue
-        #     else:
-        #         break
-
         try:    
-            scan_response = self._cc2650.recv_uart(0.2)
+            scan_response = self._cc2650.recv_uart(timeout)
         except RecvTimeout:
-            self.reset_internal()
-            self.reset_hardware()
-            self._interface.flush()
-            return True
-
+            # self.reset_internal()
+            # self.reset_hardware()
+            # self._interface.flush()
+            return False
 
         # instruction format:
         # ins[0]: get_scan_response = 0x04
@@ -2087,6 +2035,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         # print("local_name = ", local_name)
 
         # addr type is don't care in BMD380
+        print('scan_response:', list(scan_response))
         local_addr_type = int(scan_response[index:index + 1][0])
         # local_addr_type = 0xFF
         index = index + 1
@@ -2140,6 +2089,35 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
     def found(self) -> List[DeviceResponseInfo]:
         return self._found
 
+    def check_mem_survive(self) -> Optional[CC2650Device]:
+        ack = []
+        ins = bytearray()
+        ins.append(10)
+        ins.append(1) #length
+        ins.append(0xF1)
+        # print('ins', list(ins))
+
+        try:
+            self._cc2650.send("bytes", bytes(ins))
+
+        except SerialTimeoutException as e:
+            raise RecvTimeout('device CC2650 check_mem_survive timeout') from e
+
+        else:
+            try:
+                ack = self._cc2650.recv_uart(0.001)
+
+            except RecvTimeout:
+                self.log_info("no memory board")
+
+            # else:
+            #     print('ack=', ack)
+
+        if ack == [3]:
+            return True
+
+        return False
+
     @synchronized
     def connect(self, response: DeviceResponseInfo, direct_connect: bool = False) -> Optional[CC2650Device]:
         if self._handle is not None:
@@ -2555,11 +2533,10 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
                 if m is None:
                     m = CC2650SingleMasterCentralDevice(self._master, self._interface, self._options)
-                    # m.set_log_level(self._cc2650_log_level)
+                    self._cc2650[i] = m
 
                 self._interface.flush()
                 self._selector.select(i)
-                # self._mem_selector.select(i)
 
                 try:
                     self.log_info('reset device', i)
@@ -2567,10 +2544,7 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
                     with m:
                         m.reset_internal()
                         m.reset_hardware()
-
-                        if software_reset:
-                            m.reset_software()
-                            self._cc2650[i] = m
+                        m.reset_software()
 
                 except RecvTimeout:
                     self.log_warn('reset device', i, 'fail')
@@ -2579,83 +2553,11 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
         if not software_reset:
             return
 
-        # check reset result
-        available_device_id = list(map(lambda it: it[0],
-                                       filter(lambda it: it[1] is not None,
-                                              enumerate(self._cc2650))))
-
-        if len(available_device_id) == 0:
-            raise RuntimeError("reset fail, no device found")
-
-        self.log_verbose('available device', ' '.join(map(str, available_device_id)))
-
-        # initial hardware
-        for i in range(len(self._cc2650)):
-            m = self._cc2650[i]
-
-            if m is not None:
-                self._interface.flush()
-                self._selector.select(i)
-                # self._mem_selector.select(i)
-
-                try:
-                    self.log_info('init device', i)
-
-                except RecvTimeout:
-                    self.log_warn('init device', i, 'fail')
-                    self._cc2650[i] = None
-
-        # check init result, again
-        available_device_id = list(map(lambda it: it[0],
-                                       filter(lambda it: it[1] is not None,
-                                              enumerate(self._cc2650))))
-
-        if len(available_device_id) == 0:
-            raise RuntimeError("init fail, no device success")
-
-    def reset_empty_master(self, device: Optional[List[int]] = None, software_reset=True):
-        self.log_verbose('reset')
-
-        # reset hardware
-        # print("reset device = ", device)
-        for i in range(len(self._cc2650)):
-            # print(i)
-
-            m = self._cc2650[i]
-            d = self._device[i]
-
-            # print(m, d)
-
-            if m is not None and d is None:
-                m = CC2650SingleMasterCentralDevice(self._master, self._interface, self._options)
-                # m.set_log_level(self._cc2650_log_level)
-
-                self._interface.flush()
-                self._selector.select(i)
-                self._mem_selector.select(i)
-
-                try:
-                    self.log_info('reset device', i)
-
-                    with m:
-                        m.reset_internal()
-                        m.reset_hardware()
-
-                except RecvTimeout:
-                    self.log_warn('reset device', i, 'fail')
-                    self._cc2650[i] = None
-
-    def available_device(self) -> List[int]:
-        return list(map(lambda it: it[0],
-                        filter(lambda it: it[1] is not None,
-                               enumerate(self._cc2650))))
-
     def _foreach_empty_master(self) -> Iterable[int]:
-        for i in range(len(self._cc2650)):
-            m = self._cc2650[i]
+        for i in range(len(self._device)):
             d = self._device[i]
 
-            if m is not None and d is None:
+            if d is None:
                 yield i
 
     def scan_callback(self, callback: Callable[[DeviceResponseInfo], None], timeout=5, all_device=False) -> bool:
@@ -2663,28 +2565,35 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
         all_result = False
 
-        for device in self._foreach_empty_master():
+        for device in range(len(self._cc2650)):
             self.log_verbose('use', device)
 
             m = self._cc2650[device]
             d = self._device[device]
 
-            if m is not None and d is None:
+            if d is None:
                 error = None
 
                 with self:
                     self._interface.flush()
                     self._selector.select(device)
-                    # self._mem_selector.select(device)
 
                     try:
-                        sleep(0.0001)
-                        result = m.scan_callback(callback, timeout=timeout)
+                        if m.check_mem_survive() == False:
+                            continue
+
+                        result = m.scan_callback(callback, timeout=0.001)
 
                     except RuntimeError as e:
                         error = e
 
                     else:
+
+                        if result == False:
+                            result = True
+                            all_result = all_result or result
+                            continue
+
                         all_result = all_result or result
 
                         if result and not all_device:
@@ -2692,8 +2601,7 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
                 if error is not None:
                     self.log_warn('suppressed error : ' + str(error))
-                    # self.reset(device)
-        sleep(1)
+
         return all_result
 
     def found(self) -> List[DeviceResponseInfo]:
@@ -2746,7 +2654,6 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
         with self:
             self._interface.flush()
             self._selector.select(master)
-            # self._mem_selector.select(device)
 
             sleep(0.0001)
             d = m.connect(response, direct_connect)

python/biopro/device/manager.py

@@ -253,6 +253,7 @@ class DeviceInternalCommandHandler:
         return True
 
 
+# why inherit MasterDevice ?
 class DeviceManager(MasterDevice, Synchronized):
     """device manager. It manager the device libraries, found device, connected device
     and the control of the master device.
@@ -267,7 +268,6 @@ class DeviceManager(MasterDevice, Synchronized):
                  options: DeviceManagerOptions,
                  handler: Optional[DeviceInternalCommandHandler] = None):
         """
-
         :param options: manager options.
         :param handler: device internal command handler
         """
@@ -277,6 +277,7 @@ class DeviceManager(MasterDevice, Synchronized):
         if handler is None:
             handler = DeviceInternalCommandHandler()
 
+        # control server api
         self._handler: DeviceInternalCommandHandler = handler
         self._options: DeviceManagerOptions = options
 
@@ -286,7 +287,9 @@ class DeviceManager(MasterDevice, Synchronized):
         # hardware
         self._interface = options.interface
         self._master: Optional[MasterDevice] = None
+        # memory board
         self._centralMaster: Optional[MasterDevice] = None
+        # connected device
         self._device: List[CompletedDevice] = []
 
         # demo device
@@ -336,6 +339,10 @@ class DeviceManager(MasterDevice, Synchronized):
     def library_path(self) -> List[Path]:
         return self._repository.library_path
 
+    def get_device_status(self, mac_address) -> Optional[DeviceLibrary]:
+        device = self.get_device(mac_address)
+        return device.status
+
     @logging_info
     def reload_library(self):
         """reload device library"""
@@ -383,9 +390,6 @@ class DeviceManager(MasterDevice, Synchronized):
         self._demo.clear()
         self._centralMaster.reset(device, software_reset)
 
-    def available_device(self) -> List[int]:
-        return self._centralMaster.available_device()
-
     @logging_info
     def shutdown(self, release_resource=True):
         # shutdown reset memeryboard
@@ -577,7 +581,7 @@ class DeviceManager(MasterDevice, Synchronized):
 
         elif isinstance(device, str):
             for slave in self._device:
-                if ':'.join(format(b, 'x') for b in slave.mac_address) == device:
+                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
                     return slave
 
         elif isinstance(device, DeviceInfo):
@@ -1026,15 +1030,9 @@ class DeviceManager(MasterDevice, Synchronized):
             raise RuntimeError(DEVICE_NOT_FOUND, device)
 
         if DeviceCommonInstruction(instruction) is not None:
-            # print('deviceCommonInstr')
-            # print(instruction)
             device.call_instruction(instruction)
-
         elif instruction in device.library.instruction_table:
-            # print('instruction')
-            # print(instruction)
             device.call_instruction(instruction)
-
         else:
             raise RuntimeError(INSTRUCTION_UNKNOWN, instruction)
 

python/biopro/devlib/data.py

@@ -882,19 +882,18 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        current = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        voltage = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        impedance = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
-        finish_mode_falg = data[19]
+        mem_cnt = data[1]
+        time_stamp: float = struct.unpack('<I', data[4:8])[0]  # unit: ms 0x18030000
+        current = struct.unpack('<i', data[8:12])[0]  # unit: nA
+        voltage = struct.unpack('<i', data[12:16])[0]  # unit: uV
+        impedance = struct.unpack('<i', data[16:20])[0]  # unit: mOm
+        cycle_number = struct.unpack('<H', data[20:22])[0]
+        finish_mode_falg = data[22]
+        battery = struct.unpack('<i', data[23:27])[0]
+        elite_notify_times = data[27]
 
-        # print('decode', list(data[20:]))
-        mem_wrong = data[20]
-        mem_retry_cnt = data[21]
-        mem_green_wrong = data[22]
-        mem_green_retry_cnt = data[23]
-        ram_num = data[24]
+        mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
+        ram_num = data[47]
         broken_flag = data[-1]
 
         if (finish_mode_falg & 0b11110000 == 0b10100000):
@@ -915,10 +914,13 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                # print('|', time_stamp, '|', delta, '|', current, '|', voltage, '|', impedance,
+                # print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
+                #       '|', current, '|', voltage, '|', impedance,
                 #       '|', cycle_number, '|', finishMode, '@', str(self.device))
+
                 # print('|', '{:10}'.format(time_stamp),
-                #       '|', '{:10}'.format(delta),
+                #       '|', '{:4}'.format(delta),
+                #       '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
                 #       '|', '{:10}'.format(current),
                 #       '|', '{:10}'.format(voltage),
                 #       '|', '{:10}'.format(impedance),
@@ -926,12 +928,9 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 #       '|', '{:1}'.format(finishMode),
                 #       '@', str(self.device), '|')
 
-                # print('|', '{:5}'.format(mem_wrong),
-                #       '|', '{:5}'.format(mem_retry_cnt),
-                #       '|', '{:5}'.format(mem_green_wrong),
-                #       '|', '{:5}'.format(mem_green_retry_cnt),
-                #       '|', '{:5}'.format(ram_num),
-                #       '|', '{:5}'.format(broken_flag),
+                # print('|', '{:5}'.format(mem_wrong_information),
+                #       '|', '{:2}'.format(ram_num),
+                #       '|', '{:2}'.format(broken_flag),
                 #       '@', str(self.device), '|')
                 pass
 
@@ -946,14 +945,20 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         ret.append_data(1, voltage)
         ret.append_data(2, impedance)
         ret.append_data(3, cycle_number)
+        ret.append_data(4, battery)
+        ret.append_data(5, elite_notify_times)
+        ret.append_data(6, mem_cnt)
 
         # memoryboard information
-        ret.append_data(4, mem_wrong)
-        ret.append_data(5, mem_retry_cnt)
-        ret.append_data(6, mem_green_wrong)
-        ret.append_data(7, mem_green_retry_cnt)
-        ret.append_data(8, ram_num)
-        ret.append_data(9, broken_flag)
+        ret.append_data(7, ram_num)
+        ret.append_data(8, broken_flag)
+        try:
+            ret.append_data(9, mem_wrong_information)
+            # print('append_data success, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+        except:
+            print('append_data fail, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+
+
     
         if cycle_number != self._cycle_number:
             # notify cycle_number change
@@ -1451,12 +1456,12 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        ch1 = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        ch2 = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        ch3 = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
-        d19 = data[19]
+        ch1 = struct.unpack('>i', data[1+3:5+3])[0]  # unit: 1/1000 nA
+        ch2 = struct.unpack('>i', data[5+3:9+3])[0]  # unit: mV
+        ch3 = struct.unpack('>i', data[9+3:13+3])[0]  # unit: kOm
+        time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0]  # unit: ms
+        cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
+        d19 = data[19+3]
         gain = (d19 & 0x0F)
         finishMode = (d19 & 0x80) >> 7        
         

python/biopro/devlib/device.py

@@ -963,10 +963,6 @@ class MasterDevice(LoggerFlag, metaclass=abc.ABCMeta):
         """
         pass
 
-    @abc.abstractmethod
-    def available_device(self) -> List[int]:
-        pass
-
     def scan(self, timeout=5, all_device=False) -> List[DeviceResponseInfo]:
         """scan the nearby device.
 
@@ -1101,9 +1097,6 @@ class NullMasterDevice(MasterDevice):
     def shutdown(self, release_resource=True):
         pass
 
-    def available_device(self) -> List[int]:
-        return []
-
     def scan(self, timeout=5, all_device=False) -> List[DeviceResponseInfo]:
         return []
 

python/biopro/devlib/instruction.py

@@ -1268,14 +1268,15 @@ class InstructionTable(DictNode['Instruction']):
                          instruction: str):
         """call instruction. chain context with :class:`DeviceInternalInstructionScope`
 
-        :param master: master device
-        :param device: device
+        :param master: DeviceManager
+        :param device: CompletedDevice
         :param context: scope
         :param instruction: instruction name
         :raises InstructionNotFound: If instruction not found.
         """
 
         try:
+            # ex. start 
             ins = self[instruction]
 
         except KeyError as e:
@@ -1284,6 +1285,7 @@ class InstructionTable(DictNode['Instruction']):
         else:
             context = context.chain(InstructionTableScope(self))
 
+            # ex. _data_format, _sync, _notify
             for single in ins.eval_instruction(context):
                 if isinstance(single, InternalInstruction):
                     if not single.handle_internal_instruction(master, device, context):

python/biopro/devlib/library.py

@@ -966,7 +966,7 @@ class CompletedDevice(Device):
     """
     __slots__ = ('_master', '_device_id', '_device', '_library', '_context',
                  '_parameter', '_configuration', '_lock', '_feature_mask',
-                 '_cache_battery', '_cache_battery_timestamp', '_coeff')
+                 '_cache_battery', '_cache_battery_timestamp', '_coeff', '_status')
 
     def __init__(self, master: MasterDevice, library: DeviceLibrary, device_id: int, device: Device):
         """
@@ -976,11 +976,15 @@ class CompletedDevice(Device):
         :param device_id: device id
         :param device: slave device implementation
         """
+        # DeviceManager
         self._master = master
         self._device = device
         self._device_id = device_id
         self._library = library
 
+        # device status ( 0: idle, 1: working, 2: error, 3: power off)
+        self._status = 0
+
         # context
         s1 = library.constant
         s2 = DeviceScope(self)
@@ -1020,6 +1024,10 @@ class CompletedDevice(Device):
     def mac_address(self) -> ADDRESS:
         return self._device.mac_address
 
+    @property
+    def mac_address_in_str(self) -> str:
+        return ':'.join('{:02x}'.format(b) for b in self._device.mac_address)
+
     @property
     def device(self) -> Device:
         return self._device
@@ -1056,11 +1064,18 @@ class CompletedDevice(Device):
         return self._library
 
     # device lock
-
     @property
     def lock(self) -> DeviceLock:
         return self._lock
 
+    @property
+    def status(self) -> int:
+        return self._status
+    
+    @status.setter
+    def status(self, new_status):
+        self._status = new_status
+
     # device parameter getter/setter
 
     def parameters(self) -> List[str]:
@@ -1082,6 +1097,11 @@ class CompletedDevice(Device):
         :return: parameter V value
         """
         return self._configuration.get_parameter(name, False)
+    
+    def set_multi_parameters(self, parameter):
+        for (name, value) in parameter[0].items():
+            if name != 'target':
+                self.set_parameter(name, value)
 
     def set_parameter(self, name: str, value: Union[int, str]):
         """replace parameter value with *value*
@@ -1256,6 +1276,7 @@ class CompletedDevice(Device):
             'device_id':       self.device_id,
             'device_name':     self.device_name,
             'device_address':  list(self.mac_address),
+            'device_status': self._status,
             'battery':         self.battery,
             'parent':          self.parent,
             'recording_file_name':      self.recording_file_name,

python/biopro/impl/cc2650/cc2650.py

@@ -3720,12 +3720,9 @@ class CC2650Central(LoggerFlag):
             if ret is not None and len(ret) > 0:
                 return ret
 
-            elif _time() - start > 1:
+            elif _time() - start > 0.01: # read timeout
                 return None
 
-            else:
-                sleep(0.01)
-
     def _recv_event(self, timeout: Optional[float] = 1) -> Optional[list]:
         code = self._recv_byte()
         # print("code = ", code)

python/biopro/impl/ext_mem.py

@@ -16,8 +16,6 @@ MEM_REG_READ = 0x05
 DEFAULT_REGISTER_VALUE = 0b0100_0011  # 67
 MEM_SIZE = 0x1000
 
-_RUNTIME_COMPILE = False
-
 _SLEEP_TIME_ = 0.001
 
 
@@ -25,73 +23,96 @@ _SLEEP_TIME_ = 0.001
 def zero_buffer(size: int) -> List[int]:
     return [0] * size
 
+class MultiExtMemSpiInterface(LowLevelHardwareInterface):
+    MEM_INS_MARKED1 = [MEM_INS_WRITE, 0, 2, 0x5A, 0xA5]
+    MEM_INS_MARKED2 = [MEM_INS_WRITE, 0, 6, 0x5A, 0xA5]
+    MEM_INS_MARKED3 = [MEM_INS_WRITE, 0, 10, 0x5A, 0xA5]
+    # MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
 
-class ExtMemSpiInterface(LowLevelHardwareInterface):
-    MEM_INS_MARKED = [MEM_INS_WRITE, 0, 2, 1, 1]
-    MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
-
-    __slots__ = ('_spi', '_tx_buffer', '_tx_buffer_header', '_tx_buffer_data',
-                 'pin_busy', 'pin_request', 'pin_reset', 'pin_sel',
+    __slots__ = ('_selector', '_wait_for_first_data', '_spi', '_tx_buffer_header', '_tx_buffer_data',
+                 'pin_busy', 'pin_mem_req', 'pin_mem_sel', 'pin_ram_sel',
                  '_pin_sel_val',
+                 '_pin_ram_sel_value', '_pin_mem_sel_value', '_pin_mem_req_value',
                  '_read_green_times','_read_red_times',
                  '_elite_data_len', '_mem_header_len', '_mem_tailer_len', '_single_data_len',
                  '_head_wrong_cnt')
 
-    def __init__(self, device: Tuple[int, int] = None):
-        super().__init__()
-        self._spi = HardwareImplSpiInterface(device,
-                                             spi_speed=12_000_000  # XXX temp parameter
-                                             )
+    def __init__(self,
+                 select: Selector,
+                 device: Tuple[int, int] = None):
 
-        self._elite_data_len = 20
+        self._spi = HardwareImplSpiInterface(device,
+                                             spi_speed=12_000_000)
+
+        self._elite_data_len = 40
         self._mem_header_len = 3
-        self._mem_tailer_len = 8
+        self._mem_tailer_len = 6
         self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
 
         # buffer
-        self._tx_buffer = [0] * 512
-        self._tx_buffer_header = [0] * 11
+        self._tx_buffer_header = [0] * 19
         self._tx_buffer_data = [0] * (self._single_data_len * 10 + 3)
 
         # memory control pin
         self.pin_busy = OutputPin.get_used(P3Pin.MEM_BZY, True)
-        self.pin_request = OutputPin.get_used(P3Pin.MEM_REQ, True)
-        self.pin_reset = OutputPin.get_used(P3Pin.MEM_RST, True)
-        self.pin_sel: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_SEL)
+        self.pin_mem_req = OutputPin.get_used(P3Pin.MEM_REQ, False)
+        self.pin_mem_sel = OutputPin.get_used(P3Pin.MEM_RST, True) # MEM_RST -> actually which memory board is assign
+        self.pin_ram_sel: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_SEL) # MEM_SEL -> actually is RAM_SEL, which RAM is assign
 
-        self._pin_sel_val = False
+        self._pin_ram_sel_value = [bool(self.pin_ram_sel) for _ in range(Selector.SIZE)]
+        self._pin_mem_sel_value = [bool(self.pin_mem_sel) for _ in range(Selector.SIZE)]
+        self._pin_mem_req_value = [bool(self.pin_mem_req) for _ in range(Selector.SIZE)]
 
         self._read_green_times = 0
         self._read_red_times = 0
 
         self._head_wrong_cnt = [0, 0, 0, 0, 0, 0, 0, 0]
 
-    def reset(self):
-        self._spi.reset()
 
-    def close(self):
-        self._spi.close()
+        self._selector = select
 
-    def flush(self):
-        self.pin_reset.output(False)
-        self.pin_reset.output(True)
+        self._pin_sel_val = [False for _ in range(Selector.SIZE)]
+        self._wait_for_first_data = [True for _ in range(Selector.SIZE)]
+
+    def set_pin_mem_req(self, value: bool):
+        channel = self.select
+        self.pin_mem_req.output(value)
+        self._pin_mem_req_value[channel] = value
+
+    def set_pin_mem_sel(self, value: bool):
+        channel = self.select
+        self.pin_mem_sel.output(value)
+        self._pin_mem_sel_value[channel] = value
+
+    def get_pin_mem_req(self):
+        channel = self.select
+        return self._pin_mem_req_value[channel]
+
+    def get_pin_ram_sel(self):
+        channel = self.select
+        if self.pin_ram_sel.input() == 0:
+            self._pin_ram_sel_value[channel] = False
+        else:
+            self._pin_ram_sel_value[channel] = True
+        return self._pin_ram_sel_value[channel]
 
     @property
     def select(self) -> int:
-        return 0
+        return self._selector.channel
 
     @select.setter
     def select(self, value: int):
+        self._selector.select(value)
+
+    def reset(self):
+        self._spi.reset()
+
+    def flush(self):
         pass
 
-    def changed(self, flip=False) -> bool:
-        old = self._pin_sel_val
-        value = self.pin_sel.input()
-
-        if flip:
-            self._pin_sel_val = value
-
-        return value != old
+    def close(self):
+        self._selector.close()
+        self._spi.close()
 
     def send_byte(self, data: bytes):
         raise RuntimeError()
@@ -99,25 +120,18 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
     def recv_byte(self, size: int) -> Optional[bytes]:
         raise RuntimeError()
 
-    def request_data(self):
-        self.pin_request.output(False)
-        sleep(0.001)
+    def foreach(self) -> Iterable[int]:
+        for channel in self._selector.foreach():
+            yield channel
 
-        # count = 0
-        # for i in range(300):
-        #     count = count + 1
+    def set_wait_flag(self, spi_idx:int = None, value:bool = None):
+        self._wait_for_first_data[spi_idx] = value
 
-        self.pin_request.output(True)
-
-        # sleep(0.001) -> 1.2ms
-        # no sleep     -> 5us ~ 12us (central can't receive)
-
-        # for i in range
-        # (1000) -> 500us ~ 1ms
-        # (500)  -> 200us ~ 500us
-        # (300)  -> 120us ~ 270us (seldom)
-        # (200)  ->  70us ~ 160us (skip req about every 64 time) x
-        # (100)  ->  40us ~ 100us (skip req sometimes) x
+    def get_wait_flag(self, spi_idx:int = None)  -> Optional[bool]:
+        if spi_idx < Selector.SIZE:
+            return self._wait_for_first_data[spi_idx]
+        else:
+            return None
 
     def compare_green_data(self, data_first: Union[bytes, List[int]], data_second: Union[bytes, List[int]], data_third: Union[bytes, List[int]], length: int):
         data = []
@@ -153,6 +167,52 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
         print("read red data times", self._read_red_times)
         return data
 
+    def _compare_green_data_addr_and_flag(self, data: Union[bytes, List[int]], device: int):
+
+        green_data_section1 = data[3:7]
+        green_data_section2 = data[7:11]
+        green_data_section3 = data[11:15]
+        green_data_section = []
+
+        if green_data_section1 == green_data_section2:
+            green_data_section = green_data_section1
+
+        elif(green_data_section2 == green_data_section3 or green_data_section1 == green_data_section3):
+            print("green data not equal: = ", data[3:15])
+            print("green data print:", data, device, datetime.now())
+            green_data_section = green_data_section3
+
+        else:
+            print("green data not equal: = ", data[3:15])
+            print("green data print:", data, device, datetime.now())
+            green_data_section = green_data_section3 # use last data
+
+
+        return green_data_section
+
+    def _print_ram_all_data(self):
+        addr = 0
+        red_length = int(7000 / 2)
+        tx_temp = [0] * (red_length + 3)
+
+        while True:
+            tx_temp[0] = MEM_INS_READ
+            tx_temp[1] = ((addr >> 8) & 0xFF)
+            tx_temp[2] = (addr & 0xFF)
+
+            ram_data = []
+            ram_data = self._spi.send_byte(tx_temp)
+            ram_data[0:3] = [255, 255, 255]
+            print(list(ram_data), len(ram_data), addr)
+            addr += len(ram_data) - 3
+
+            if (7000 < addr + len(ram_data)):
+                del ram_data
+                break
+        print()
+
+        return
+
     def recv_memory(self, device: int) -> Optional[bytes]:
         self.pin_busy.output(False)
 
@@ -162,7 +222,6 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
             address = 0
 
             # first read to get data length
-            tx = self._tx_buffer
             tx_h = self._tx_buffer_header
 
             tx_h[0] = MEM_INS_READ
@@ -178,9 +237,9 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
 
             if (data[0] != 255 or data[1] != 255 or data[2] != 255):
                 self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
-                if (self._head_wrong_cnt[device] < 6):
-                    print('data_first[0:3] != [255, 255, 255]', device)
-                    print(list(data[0:7]))
+                if (self._head_wrong_cnt[device] <= 5): # print 5 times
+                    print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
+                    print(list(data))
 
             data[0:3] = [255, 255, 255]
             # ----------------------------------------------------------------------------------------------
@@ -198,14 +257,14 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
             # if (data_first[0] != 255 or data_first[1] != 255 or data_first[2] != 255):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
             #     if (self._head_wrong_cnt[device] < 10):
-            #         print('data_first[0:3] != [255, 255, 255]', device)
-            #         print(list(data_first[0:7]))
+            #         print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
+            #         print(list(data_first))
 
             # if (data_second[0] != 255 or data_second[1] != 255 or data_second[2] != 255):
             #     self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
             #     if (self._head_wrong_cnt[device] < 10):
-            #         print('data_second[0:3] != [255, 255, 255]', device)
-            #         print(list(data_second[0:7]))
+            #         print('data_second[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
+            #         print(list(data_second))
 
             # if (data_first[3:] == data_second[3:]):
             #     data = data_first
@@ -217,59 +276,47 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
             #     data = self.compare_green_data(data_first, data_second, data_third, len(tx_h))
             # ----------------------------------------------------------------------------------------------
 
-            # debug use
-            # green_data = []
-            # green_data = data
-            # print("_[Debug] @ spi green data = ", green_data)
+            green_data_section = self._compare_green_data_addr_and_flag(data, device)
 
-            length = (data[3] << 8) | data[4]
-            header = data[7]
-            elite_data_len = data[9]
+            length = (green_data_section[0] << 8) | green_data_section[1]
+            header = data[15]
+            elite_data_len = data[17]
+
+            if length <= 12:
+                if length < 12:
+                    print("length < 12")
+                    print("green data print:", data, device, datetime.now())
+
+                # if length == 0:
+                #     self._print_ram_all_data()
 
-            if length <= 4:
-                # print("length <= 4")
-                # print("green data print:", data, device, datetime.now())
                 return None
 
-            if data[5] != 0 or data[6] != 0:
+            if green_data_section[2] != 0xA5 or green_data_section[3] != 0x5A:
                 # give a default length if the data header did not update
-                length = 7000
-                print("green data: is not [0,0], = ", data[5:7])
+                print("green data: is not [0xA5, 0x5A], = ", data[5:7])
                 print("green data print:", data, device, datetime.now())
                 return None
 
-            if (length >= 7000):
+            if (length >= 4000):
                 flag_print = True
                 print("green data: big length:", length)
 
             if (header != 255):
                 flag_print = True
                 print("green data: header is not 255: ", header)
+                # self._print_ram_all_data()
 
             if (elite_data_len != self._elite_data_len):
                 flag_print = True
                 print("green data: length is not", self._elite_data_len, ": ", elite_data_len)
 
             if (flag_print):
-                print("green data print:", data, device, datetime.now())
+                print("green data print:", data, device, datetime.now(), '\n')
 
-            # neulive
-            # address += len(data) - 11
-            # tx_d = self._tx_buffer_data
-            # red_length = len(tx_d)
-
-            # elite read all data of ram
-            # address = 4
-            # red_length = length - 1 
-            # tx_d = [0] * red_length
-
-            address = 4
+            address = 12
             red_length = int(length / 2)
-            tx_d = [0] * red_length
-
-            # elite read len(_tx_buffer_data) byte
-            # address = 4
-            # tx_d = self._tx_buffer_data
+            tx_d = [0] * (red_length + 3)
 
             while True:
                 tx_d[0] = MEM_INS_READ
@@ -308,22 +355,60 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
                     address += len(data) - 3
                     del data
 
-            # print("_[Debug] @ spi recv data rx = ")
+            # last_index = 0
+            # print("_[Debug] @ spi recv data rx, ram_select:", self._pin_ram_sel_value[device], ",", datetime.now())
             # for i in range(0, len(rx), self._single_data_len):
-            #     print(rx[i:i+self._single_data_len])
+            #     last_index = i
+            #     # print(rx[i:i+self._single_data_len])
+            #     if i == 0:
+            #         print(rx[0:8], 'ram:', rx[47])
+
+            # if last_index != 0:
+            #     print(rx[last_index:last_index+8], 'ram:', rx[last_index+47])
             # print()
 
             # /* 
             #  * red data formate:
             #  * ramHdr, ramHdr, ramHdr,                                   (3B)
             #  * 255, #, data_length,                                      (3B)
-            #  * data,                                                     (20B)
+            #  * data,                                                     (40B)
             #  * red_wrong, red_retry_cnt, green_wrong, green_retry_cnt,   (4B)
-            #  * 255, #, data_length,                                      (3B) 
+            #  * check_num,                                                (1B)
             #  *                                                                  */
 
+            # read again if check num is wrong
+            index = 0
+            check_number_print = False
+            for i in range(0, len(rx), self._single_data_len):
+                check_sum = sum(rx[i : i + self._single_data_len - 1]) & 0b11111111
+                # print(check_sum, rx[i + self._single_data_len - 1])
+
+                if (check_sum != rx[i + self._single_data_len - 1]):
+                    # print('check_sum wrong, origin value:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
+                    tx_d = [0] * (self._single_data_len + 3)
+                    address = 12 + self._single_data_len * index
+                    tx_d[0] = MEM_INS_READ
+                    tx_d[1] = ((address >> 8) & 0xFF)
+                    tx_d[2] = (address & 0xFF)
+
+                    data = []
+                    data = self._spi.send_byte(tx_d)
+                    data[0:3] = [255, 255, 255]
+                    rx[i : i + self._single_data_len] = data[3:]
+                    print('check_sum wrong, read again:', 'check_sum =', check_sum, rx[i : i + self._single_data_len])
+                    check_number_print = True
+                index = index + 1
+
+            if check_number_print:
+                print('check_sum wrong:', device, datetime.now())
+                for i in range(0, len(rx), self._single_data_len):
+                    print(rx[i:i+self._single_data_len])
+                print()
+
             # mark read
-            self._spi.send_byte(self.MEM_INS_MARKED)
+            self._spi.send_byte(self.MEM_INS_MARKED1)
+            self._spi.send_byte(self.MEM_INS_MARKED2)
+            self._spi.send_byte(self.MEM_INS_MARKED3)
 
         except BaseException as e:
             print(e)
@@ -356,108 +441,39 @@ class ExtMemSpiInterface(LowLevelHardwareInterface):
 
         self._spi.send_byte(tx)
 
-    def flush_all(self):
-        self.flush()
-
-    def foreach(self) -> Iterable[int]:
-        yield 0
-
-
-class MultiExtMemSpiInterface(ExtMemSpiInterface):
-    __slots__ = ('_selector', '_wait_for_first_data')
-
-    def __init__(self,
-                 select: Selector,
-                 device: Tuple[int, int] = None):
-        super().__init__(device)
-
-        self._selector = select
-
-        self._pin_sel_val = [False for _ in range(Selector.SIZE)]
-        self._wait_for_first_data = [True for _ in range(Selector.SIZE)]
-
-    @property
-    def select(self) -> int:
-        return self._selector.channel
-
-    @select.setter
-    def select(self, value: int):
-        self._selector.select(value)
-
-    def changed(self, flip=False) -> bool:
-        channel = self._selector.channel
-        old = self._pin_sel_val[channel]
-        value = bool(self.pin_sel)
-
-        if flip:
-            self._pin_sel_val[channel] = value
-
-        return value != old
-
-    def reset(self):
-        self._spi.reset()
-
-    def close(self):
-        self._selector.close()
-        super().close()
-
-    def flush_all(self):
-        for _ in self._selector.foreach():
-            self.pin_reset.output(False)
-            self.pin_reset.output(True)
-
-    def foreach(self) -> Iterable[int]:
-        for channel in self._selector.foreach():
-            yield channel
-
-    def set_wait_flag(self, spi_idx:int = None, value:bool = None):
-        self._wait_for_first_data[spi_idx] = value
-    
-    def get_wait_flag(self, spi_idx:int = None)  -> Optional[bool]:
-        if spi_idx < Selector.SIZE:
-            return self._wait_for_first_data[spi_idx]
-        else:
-            return None
-
-
 class ExtMemManager:
-    def __init__(self, ext_mem: ExtMemSpiInterface):
-        self._mem_sel = InputPin.get_used(P3Pin.MEM_SEL, pull_up_down=True)
-        self._mem_req = OutputPin.get_used(P3Pin.MEM_REQ, initial=True)
-
+    def __init__(self, ext_mem: MultiExtMemSpiInterface):
         self._ext_mem = ext_mem
 
-    @property
-    def mem_sel(self) -> int:
-        return int(self._mem_sel)
-
-    @property
-    def mem_req(self) -> int:
-        return int(self._mem_req)
-
-    def mem_request(self):
-        self._mem_req.pulse()
-        sleep(_SLEEP_TIME_)
-
     def get_ext_mem_register(self) -> List[Tuple[Optional[int], Optional[int]]]:
         ret = [(None, None) for _ in range(Selector.SIZE)]
 
         for channel in self._ext_mem.foreach():
             r = [None, None]
 
-            self.mem_request()
-            sleep(0.01)
-            m1 = int(self._mem_sel)
+            self._ext_mem.set_pin_mem_sel(False)
+            pin_value = self._ext_mem.get_pin_mem_req()
+            self._ext_mem.set_pin_mem_req(not pin_value)
+
+            m1 = int(self._ext_mem.get_pin_ram_sel())
             # print("m1 = ", m1)
             self._ext_mem.write_register(DEFAULT_REGISTER_VALUE)
             r[m1] = self._ext_mem.read_register()
+            sleep(0.040)
+            self._ext_mem.set_pin_mem_sel(True)
+            sleep(0.200)
 
-            self.mem_request()
-            sleep(0.01)
-            m2 = int(self._mem_sel)
+            self._ext_mem.set_pin_mem_sel(False)
+            pin_value = self._ext_mem.get_pin_mem_req()
+            self._ext_mem.set_pin_mem_req(not pin_value)
+
+            m2 = int(self._ext_mem.get_pin_ram_sel())
             # print("m2 = ", m2)
             self._ext_mem.write_register(DEFAULT_REGISTER_VALUE)
             r[m2] = self._ext_mem.read_register()
+            sleep(0.040)
+            self._ext_mem.set_pin_mem_sel(True)
+            sleep(0.200)
 
             ret[channel] = tuple(r)
 
@@ -483,33 +499,6 @@ class ExtMemManager:
 
         return 0
 
-    def get_no_device_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
-        if result is None:
-            result = self.get_ext_mem_register()
-
-        ret = []
-
-        for channel, result in enumerate(result):
-            if self.is_no_device(result):
-                ret.append(channel)
-
-        return ret
-
-    def get_memory_test_fail(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
-        if result is None:
-            result = self.get_ext_mem_register()
-
-        ret = []
-
-        for channel, result in enumerate(result):
-            if self.is_no_device(result):
-                continue
-
-            if self.is_memory_test_fail(result) != 0:
-                ret.append(channel)
-
-        return ret
-
     def get_available_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
         if result is None:
             result = self.get_ext_mem_register()
@@ -526,173 +515,3 @@ class ExtMemManager:
             ret.append(channel)
 
         return ret
-
-    def test_available_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
-        if result is None:
-            result = self.get_ext_mem_register()
-
-        available_channel = []
-
-        for channel, result in enumerate(result):
-            r1, r2 = result
-
-            if self.is_no_device(result):
-                print('channel', channel, 'no device')
-                continue
-
-            test_pass = True
-
-            if r1 is None or r2 is None:
-                test_pass = False
-                print('channel', channel, 'mem_sel', 'x', 'not change')
-
-            if r1 is not None and r1 > 0 and r1 != DEFAULT_REGISTER_VALUE:
-                test_pass = False
-                print('channel', channel, 'mem_sel', 0, 'register', r1)
-
-            if r2 is not None and r2 > 0 and r2 != DEFAULT_REGISTER_VALUE:
-                test_pass = False
-                print('channel', channel, 'mem_sel', 1, 'register', r2)
-
-            if test_pass:
-                print('channel', channel, 'mem_sel', 0, 'register', r1)
-                print('channel', channel, 'mem_sel', 1, 'register', r2)
-                available_channel.append(channel)
-
-        return available_channel
-
-    def test_memory_read_write(self, channel: int, print_result=False) -> bool:
-        self._ext_mem.select = channel
-
-        addr = 4
-        size = 100
-        test_pass = True
-
-        while addr < MEM_SIZE:
-            d1 = [randint(10, 99) for _ in range(size)]
-            d2 = [randint(10, 99) for _ in range(size)]
-
-            self.mem_request()
-            m1 = int(self._mem_sel)
-            self._ext_mem.write_memory(addr, d1)
-
-            self.mem_request()
-            m2 = int(self._mem_sel)
-            self._ext_mem.write_memory(addr, d2)
-
-            self.mem_request()
-            m11 = int(self._mem_sel)
-            r1 = self._ext_mem.read_memory(addr, size)
-
-            if m1 != m11:
-                test_pass = False
-                if print_result:
-                    print('channel', channel, 'mem_sel not change')
-
-            if d1 != r1:
-                test_pass = False
-                if print_result:
-                    self.print_bytes_diff(d1, r1)
-
-            self.mem_request()
-            m22 = int(self._mem_sel)
-            r2 = self._ext_mem.read_memory(addr, size)
-
-            if m2 != m22:
-                test_pass = False
-                if print_result:
-                    print('channel', channel, 'mem_sel not change')
-
-            if d2 != r2:
-                test_pass = False
-                if print_result:
-                    self.print_bytes_diff(d2, r2)
-
-            addr += size
-
-        return test_pass
-
-    @staticmethod
-    def print_bytes_diff(_1: List[int], _2: List[int]):
-        s1 = ''
-        s2 = ''
-
-        l1 = len(_1)
-        l2 = len(_2)
-
-        for i in range(min(l1, l2)):
-            v1 = _1[i]
-            v2 = _2[i]
-
-            if v1 == v2:
-                s1 += '%02X ' % v1
-                s2 += '%02X ' % v2
-            else:
-                s1 += '%02X ' % v1
-                s2 += pc('%02X' % v2, RED) + ' '
-
-        if l1 == l2:
-            pass
-
-        elif l1 < l2:
-            for i in range(l1, l2):
-                s2 += pc('%02X' % _2[i], GREEN) + ' '
-        else:
-            for i in range(l2, l1):
-                s1 += pc('%02X' % _1[i], RED) + ' '
-
-        print(s1)
-        print(s2)
-
-
-def hardware_test():
-    ext_mem = MultiExtMemSpiInterface(Selector.get(Selector.MEM_SELECTOR))
-
-    fake_mode = False
-
-    try:
-        ext_mem.reset()
-    except FileNotFoundError:
-        fake_mode = True
-
-    ret = {
-        'channel_count': Selector.SIZE,
-        'memory_size':   MEM_SIZE,
-        'pin_mem_req':   P3Pin.MEM_REQ,
-        'pin_mem_sel':   P3Pin.MEM_SEL,
-    }
-
-    if not fake_mode:
-        tester = ExtMemManager(ext_mem)
-
-        result = tester.get_ext_mem_register()
-        no_device = tester.get_no_device_channel(result)
-        reg_fail = tester.get_memory_test_fail(result)
-        available = tester.get_available_channel(result)
-
-        channel = ['unknown' for _ in range(Selector.SIZE)]
-
-        for ch in range(len(channel)):
-            if ch in no_device:
-                channel[ch] = 'no_device'
-
-            elif ch in reg_fail:
-                channel[ch] = 'reg_fail'
-
-            elif not tester.test_memory_read_write(ch):
-                channel[ch] = 'mem_fail'
-
-            else:
-                channel[ch] = 'available'
-
-        ret['register'] = result
-        ret['available'] = available
-        ret['channel'] = channel
-
-    return ret
-
-
-if __name__ == '__main__':
-    from pprint import pprint
-
-    pprint(hardware_test())

python/biopro/impl/interface_spi.py

@@ -53,7 +53,7 @@ class HardwareImplSpiInterface(LowLevelHardwareInterface):
     *MISO*, *SCLK*, *GE0_N*
     """
 
-    __slots__ = ('_device', '_spi', '_spi_mode', 'pin_request', '_spi_speed')
+    __slots__ = ('_device', '_spi', '_spi_mode', '_spi_speed')
 
     def __init__(self,
                  device: Tuple[int, int] = None,

python/biopro/impl/interface_uart.py

@@ -28,7 +28,7 @@ class UARTInterface(LowLevelHardwareInterface):
         self._serial = serial.Serial(self._port,
                                      baudrate=self._baudrate,
                                      timeout=0,
-                                     writeTimeout=1)
+                                     writeTimeout=0.01)
         # deprecate function name which change at version 3.0
         self._serial.flushInput()
         self._serial.flushOutput()

python/biopro/impl/selector.py

@@ -117,14 +117,14 @@ class Selector:
         self._p1.output(p[1])
         self._p2.output(p[2])
 
-        if (value == 4 and self._last_sel != 6):
-            print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
-        elif (value == 5 and self._last_sel != 4):
-            print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
-        elif (value == 7 and self._last_sel != 5):
-            print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
-        elif (value == 6 and self._last_sel != 7):
-            print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        # if (value == 4 and self._last_sel != 6):
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        # elif (value == 5 and self._last_sel != 4):
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        # elif (value == 7 and self._last_sel != 5):
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
+        # elif (value == 6 and self._last_sel != 7):
+        #     print('mem_sel is not use gray code, value:', value, ', last value:', self._last_sel)
             
         self._last_sel = value
 

python/biopro/project/action.py

@@ -0,0 +1,26 @@
+
+class Action():
+    def __init__(self, action_id, action):
+        self._id: str = action_id
+        self._type: str = action['type']
+        self._target: str = action['target']
+        self._condition : list[str] = action['condition']
+        # self._duration = action.get('duration', None)
+        # self._goto = action.get('goto', None)
+        # self._cycle = action.get('cycle', None)
+    
+    @property
+    def id(self):
+        return self._id
+
+    @property
+    def type(self):
+        return self._type
+    
+    @property
+    def target(self):
+        return self._target
+    
+    @property
+    def condition(self):
+        return self._condition

python/biopro/project/condition.py

@@ -0,0 +1,96 @@
+from datetime import datetime
+from time import time
+
+class Condition():
+    def __init__(self, id, condition):
+        self._id = id
+        self._type = condition['type']
+        self._comparsion = condition['comparsion']
+        self._value = condition['value']
+        self._active = False
+    
+    @property
+    def id(self):
+        return self._id
+
+    @property
+    def type(self):
+        return self._type
+
+    @property
+    def comparsion(self):
+        return self._comparsion
+
+    @property
+    def value(self):
+        return self._value
+    
+    @id.setter
+    def id(self, new_id):
+        self._id = new_id
+    
+    @type.setter
+    def type(self, new_type):
+        self._type = new_type
+
+    @comparsion.setter
+    def comparsion(self, new_comparsion):
+        self._comparsion = new_comparsion    
+    
+    @value.setter
+    def value(self, new_value):
+        self._value = new_value
+
+    def compareWith(self, operator, x, y) -> bool:
+        # print(operator, x, y)
+        cases = {
+            "equal": lambda a, b: a == b,
+            "bigger": lambda a, b: a > b,
+            "smaller": lambda a, b: a < b,
+        }
+
+        return cases[operator](x, y)
+
+    def match_or_not(self, **kwargs):
+        # print(self._type, self._comparsion, self._value)
+        return getattr(self, self.type)(**kwargs)
+       
+    def absolute_time(self, **kwargs):
+        now = int(time())
+        time_condition = round(self.datetime_to_timestamp(self.str_to_datetime(self._value)))
+
+        return self.compareWith(self.comparsion, now, time_condition)
+
+    def after_project_run(self, **kwargs):
+        project_start_time = kwargs['project_start_time']
+        delay_time = kwargs['delay_time']
+
+        time_diff = int(time() - project_start_time - delay_time)
+        return self.compareWith(self.comparsion, time_diff, int(self._value))
+    
+    def after_task_run(self, **kwargs):
+        # print('relative_time_from_task', kwargs,kwargs['task_start_time'],kwargs['delay_time'])
+        if len(kwargs['task_start_time']) == 0:
+            return False
+        task_start_time = kwargs['task_start_time'][-1]
+        delay_time = kwargs['delay_time']
+
+        time_diff = int(time() - task_start_time - delay_time)
+        # print('time_diff',  time_diff)
+        return self.compareWith(self.comparsion, time_diff, int(self._value))
+    
+    def device(self, **kwargs):
+        print('device')
+    
+    def previous_task_done(self, **kwargs):
+        running_task = kwargs['running_task']
+        if running_task.status == 2 and self._active == False:
+            self._active = True
+            return True
+        return False
+
+    def str_to_datetime(self, time_str):
+        return datetime.strptime(time_str,'%Y-%m-%dT%H:%M')
+
+    def datetime_to_timestamp(self, date):
+        return datetime.timestamp(date)

python/biopro/project/instruction.py

@@ -0,0 +1,32 @@
+
+class Instruction():
+    def  __init__(self):
+        self._instruction_set = {
+            'set_file_name': {
+                'method': 'update_recording_file_name_info',
+                'arguments': ['file_name']
+            },
+            'set_parent': {
+                'method': 'update_parent_info',
+                'arguments': ['parent']
+            },
+            'set_parameter':{
+                'method': 'set_multi_parameters',
+                'arguments': ['parameter']
+            },
+            'call_instruction': {
+                'method': 'call_instruction',
+                'arguments': ['instruction']
+            },
+        }
+    
+        self._start_instruction = list(map(lambda ins: self._instruction_set[ins] ,['set_file_name', 'set_parent', 'set_parameter', 'call_instruction']))
+        self._stop_instruction = list(map(lambda ins: self._instruction_set[ins] ,['call_instruction']))
+    
+    @property
+    def start(self) -> list:
+        return self._start_instruction
+    
+    @property
+    def stop(self) -> list:
+        return self._stop_instruction

python/biopro/project/project.py

@@ -0,0 +1,209 @@
+import sys
+import json
+import threading
+
+from time import time, sleep
+from datetime import datetime
+from collections import deque
+from copy import copy
+from uuid import uuid4
+
+from .task import Task
+from .task_manager import TaskManager
+from .instruction import Instruction
+from biopro.device.manager import DeviceManager
+from biopro.text import *
+
+key_list = {
+  'deviceList': 'device',
+}
+
+class Project(threading.Thread):
+  def __init__(self, project, device_manager: DeviceManager, mqttThread = None, name="project"):
+    super(Project, self).__init__(name = name)
+    self._project = project
+    self._device_manager = device_manager
+    self._mqtt_thread = mqttThread
+    self._time_interval = 1
+    self._start_time = None
+    self._end_time = None
+
+    self._id = None
+    self._uuid = uuid4()
+    self._name = None
+    self._desc = None
+    self._device = None
+    self._complete_device = []
+    self._status = None
+
+    self._instruction_set = Instruction()
+    self._stop_flag  = False
+
+    self.setup_project(project)
+    self.setup_device(self._device)
+  
+  def setup_project(self, project):
+    for (key, value) in project.items():
+      if key in key_list.keys():
+        key = key_list[key]
+
+      if key == 'task':
+        self._task_manager = TaskManager(project['task'])
+      else:
+        setattr(self, key, value)
+      
+  def setup_device(self, device_list):
+    for device in device_list:
+      complete_device = self._device_manager.get_device(device['connectDevice']['device_address'])
+      self._complete_device.append(complete_device)
+
+  @property
+  def id(self) -> int:
+    return self._id
+  
+  @id.setter
+  def id(self, new_id):
+    self._id = new_id
+  
+  @property
+  def uuid(self) -> str:
+    return self._uuid
+  
+  @uuid.setter
+  def uuid(self, new_uuid):
+    self._uuid = new_uuid
+
+  @property
+  def name(self) -> str:
+    return self._name
+  
+  @name.setter
+  def name(self, new_name):
+    self._name = new_name
+
+  @property
+  def desc(self) -> str:
+    return self._desc
+  
+  @desc.setter
+  def desc(self, new_desc):
+    self._desc = new_desc
+  
+  @property
+  def status(self) -> str:
+    return self._status
+  
+  @status.setter
+  def status(self, new_status):
+    self._status = new_status
+
+  @property
+  def device(self) -> list:
+    return self._device
+  
+  @device.setter
+  def device(self, new_device):
+    self._device = new_device
+  
+  @property
+  def task_list(self):
+    return self.task_manager.task_list
+
+  
+  @property
+  def mqtt_thread(self):
+    return self._mqtt_thread
+
+  def run(self):
+      self._start_time = time()
+
+      self.mqtt_thread.broadcast_command('project:' + self._name + ' start_at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+      while not self._stop_flag :
+        # check running task first
+        delay_time = 0
+        check_list = copy(self._task_manager.check_list)
+
+        for task in check_list:
+          if task != None:
+            now = time()
+            # print('round task', task.name)
+            # print('running task', self._task_manager.running_task.name, self._task_manager.running_task.status)
+            # if self._task_manager.prev_task != None:
+            #   print('previous_task', self._task_manager.prev_task.name, self._task_manager.prev_task.status)
+
+            match_condition_list = task.check_condition(
+              project_start_time = self._start_time,
+              delay_time = delay_time,
+              running_task= self._task_manager.running_task,
+              previous_task =  self._task_manager.prev_task
+            )
+            # print('match_condition_list', match_condition_list)
+            for condition in match_condition_list:
+              match_action_list = task.get_match_action(condition.id)
+              for action in match_action_list:
+                # print('match_action', action.type, action.target)
+                if action.type == 'start' and task.status != 1:
+                  self._task_manager.set_running_task(task)
+                  self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+
+                device = self._complete_device[action.target]
+                task_info = task.get_task_info(action)
+                instruction_set = getattr(self._instruction_set, action.type, None)
+                # print('instruction_set',instruction_set)
+                
+                if instruction_set != None:
+                  for instruction in instruction_set:
+                    args = list(map(lambda arg: task_info[arg], instruction['arguments']))
+                    threading.Thread(target=getattr(device, instruction['method'])(*args))
+            
+            delay_time += (time() - now)
+
+        # check task not running then stop
+        if self.check_running_task_not_run() == True:
+          self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+          self._task_manager.running_task.stop()
+        
+        # check project done then close project
+        if self.check_project_done() == True:
+          self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
+          print('project stop at', datetime.now())
+          self.close()
+        
+        if self._time_interval - delay_time > 0:
+          sleep(self._time_interval - delay_time)
+
+  def pause(self):
+    # TODO
+    pass
+
+  def close(self):
+    self._end_time = time()
+    self._stop_flag  = True
+
+  def check_project_done(self):
+    for task in self._task_manager.task_list:
+      # if task never start or still task is running then reject 
+      if task.status == 1 or task.status == -1:
+        return False
+    return True
+  
+  def check_running_task_not_run(self):
+    # if no running task
+    if self._task_manager.running_task == None:
+      return False
+    device_list = self._task_manager.running_task.device
+    for device in device_list:
+      if self._complete_device[device].status == 1:
+        return False
+    return True
+  
+  def as_json(self):
+    return {
+      'id': self._id,
+      'name': self._name,
+      'uuid': self._uuid,
+      'desc': self._desc,
+      'status': self._status,
+      'device': self._device,
+      'task_list': self.task_list,
+    }

python/biopro/project/project_manager.py

@@ -0,0 +1,33 @@
+from io import StringIO
+from json import loads as json_parse, dumps as _json_stringify
+from typing import Dict, Optional, Any
+import paho.mqtt.client as mqtt
+from .project import Project
+from biopro.device.manager import DeviceManager
+
+def json_stringify(o: Any) -> str:
+    return _json_stringify(o, separators=(',', ':'))
+
+class ProjectManager():
+    def __init__(self, device_manager: DeviceManager, mqtt_thread=None) :
+        self._project_list = []
+        self._mqtt_thread =  mqtt_thread
+        self._device_manager = device_manager
+    
+    def create(self, project):
+      new_project = Project(project, self._device_manager, self._mqtt_thread)
+      self._project_list.append(new_project)
+      return new_project
+
+    def remove(self, index):
+      self._project_list[index].stop()
+      del self._project_list[index]
+
+    def get(self):
+      return self._project_list
+
+    def run(self, project):
+      project.start()
+
+    def stop(self, project):
+      project.stop()

python/biopro/project/task.py

@@ -0,0 +1,252 @@
+from typing import List
+from .condition import Condition
+from .action import Action
+from time import time
+from datetime import datetime
+
+key_list = {
+  'deviceList': 'device',
+  'parameterSet': 'parameter_set'
+}
+
+class Task:
+  def __init__(self, task):
+    self._id = None
+    self._name = None
+    self._parent = None
+    self._cycle = None
+    self._device = None
+    self._event = None
+    self._trigger = None
+    self._parameter_set = None
+    self._condition = None
+    self._action = None
+    # -1: initial 0: start(idle), 1: running, 2: close(idle)
+    self._status = 0
+    self._next = None
+
+    self._condition_list: List[Condition] = []
+    self._action_list: List[Action] = []
+    self._instruction_list = []
+    self._record_list = []
+
+    self._start_time = []
+    self._idle_time = []
+    self._end_time = []
+    self._period = None
+
+    self.load_task(task)
+  
+  def load_task(self, task) -> None:
+    # update task attribute
+    for key, value in task.items():
+      if key in key_list.keys():
+        key = key_list[key]
+      if key == 'condition':
+        self.update_condition_list(value)
+      if key == 'action':
+        self.update_action_list(value)
+      # print(key, value)
+      setattr(self, key, value)
+    
+  def update_condition_list(self, condition_dict):
+    self._condition_list.clear()
+    for key, condition in condition_dict.items():
+      self._condition_list.append(Condition(key, condition))
+    
+  def update_action_list(self, action_dict):
+    self._action_list.clear()
+    for key, action in action_dict.items():
+      self._action_list.append(Action(key, action))
+
+  @property
+  def id(self) -> str:
+    return self._id
+  
+  @id.setter
+  def id(self, new_id):
+    self._id = new_id
+  
+  @property
+  def uuid(self) -> str:
+    return self._uuid
+  
+  @uuid.setter
+  def uuid(self, new_uuid):
+    self._uuid = new_uuid
+  
+  @property
+  def name(self):
+    return self._name
+  
+  @name.setter
+  def name(self, new_name):
+    self._name = new_name
+
+  @property
+  def parent(self):
+    if self._parent == None:
+      return  {"folder": [2]}
+    return self._parent
+  
+  @parent.setter
+  def parent(self, new_parent):
+    self._parent = new_parent
+
+  @property
+  def cycle(self) -> int:
+    return self._cycle
+  
+  @cycle.setter
+  def cycle(self, new_cycle):
+    self._cycle = new_cycle
+  
+  @property
+  def device(self) -> dict:
+    return self._device
+  
+  @device.setter
+  def device(self, new_device):
+    self._device = new_device
+  
+  @property
+  def event(self) -> list:
+    return self._event
+  
+  @event.setter
+  def event(self, new_event):
+    self._event = new_event
+
+  @property
+  def trigger(self) -> list:
+    return self._trigger
+  
+  @trigger.setter
+  def trigger(self, new_trigger):
+    self._trigger = new_trigger
+  
+  @property
+  def parameter_set(self) -> list:
+    return self._parameter_set
+  
+  @parameter_set.setter
+  def parameter_set(self, new_parameter_set):
+    self._parameter_set = new_parameter_set
+
+  @property
+  def condition(self) -> list:
+    return self._condition
+  
+  @condition.setter
+  def condition(self, new_condition):
+    self._condition = new_condition
+  
+  @property
+  def action(self) -> list:
+    return self._action
+  
+  @action.setter
+  def action(self, new_action):
+    self._action = new_action
+
+  @property
+  def status(self) -> str:
+    return self._status
+  
+  @status.setter
+  def status(self, new_status):
+    self._status = new_status
+  
+  @property
+  def next(self) -> str:
+    return self._next
+  
+  @next.setter
+  def next(self, new_next):
+    self._next = new_next
+  
+  @property
+  def instruction_list(self) -> List:
+    return self._instruction_list
+  
+  @property
+  def start_time(self) -> List:
+    return self._start_time
+  
+  @property
+  def end_time(self) -> List:
+    return self._end_time
+  
+  def new_start_time(self):
+    self._start_time.append(time())
+  
+  def new_end_time(self):
+    self._end_time.append(time())
+    
+  def get_parameter_set_by_device(self, device):
+     return [parameter_set for parameter_set in self.parameter_set.values() if device == parameter_set['target']]
+
+  def get_parameter(self, name_or_value, device):
+    name_list = []
+    value_list = []
+    for parameter in self.get_parameter_set_by_device(device):
+      for key, value in parameter.items():
+        if key != 'target':
+          name_list.append(key)
+          value_list.append(str(value))
+
+    return '|'.join(name_list) if name_or_value == 'name' else '|'.join(value_list)
+  
+  def run(self):
+    print(self._name, 'run at', datetime.now())
+    self._status = 1
+    self._start_time.append(time())
+  
+  def start(self):
+    self.status = 1
+  
+  def stop(self):
+    self.status = 2
+
+  def get_match_action_list(self, match_condition_list):
+    return map(lambda condition: [x for x in self._action_list if condition.id in x.get_condition_list()], match_condition_list)
+  
+  def get_match_action(self, condition_id):
+    return [action for action in self._action_list if condition_id in action.condition]
+
+  def do_action(self, action): 
+    for instruction in action.get_instruction_list():
+      self._instruction_list.append(instruction)
+
+  def check_condition(self, **kwargs):
+    kwargs['task_start_time'] = self._start_time
+    return [condition for condition in self._condition_list if  condition.match_or_not(**kwargs)]
+  
+  def get_task_info(self, action):
+    _type = action.type
+    if _type == 'stop':
+      _type = 'interrupt'
+
+    return {
+      'device': action.target,
+      'parameter': self.get_parameter_set_by_device(action.target),
+      'file_name': self._name + '-' + str(action.target),
+      'parent': self.parent,
+      'instruction': _type
+    }
+  
+  def as_json(self):
+    return {
+      'id': self.id,
+      'name': self.name,
+      'parent': self.parent,
+      'cycle': self.cycle,
+      'device': self.device,
+      'event': self.event,
+      'trigger': self.trigger,
+      'parameter_set': self.parameter_set,
+      'condition': self.condition,
+      'action': self.action,
+      'status': self.status,
+      'next': self.next,
+    }

python/biopro/project/task_manager.py

@@ -0,0 +1,84 @@
+from json import loads as json_parse, dumps as _json_stringify
+from socket import if_nametoindex
+from typing import Dict, List, Optional, Any
+from xml.dom.expatbuilder import parseString
+import paho.mqtt.client as mqtt
+from biopro.text import *
+from .task import Task
+
+_RUNTIME_COMPILE = False
+
+def json_stringify(o: Any) -> str:
+    return _json_stringify(o, separators=(',', ':'))
+
+class TaskManager():
+    def __init__(self, task_list):
+      self._task_list = []
+      self._next_task = []
+      self._prev_task = None
+      self._running_task = None
+      
+      self.load_task_list(task_list)
+
+      # self.set_running_task(self._task_list[0])
+      # self._running_task.run()
+      self._next_task.append(self._task_list[0])
+    
+    @property
+    def task_list(self):
+      return self._task_list
+
+    @property
+    def prev_task(self):
+      return self._prev_task
+    
+    @property
+    def running_task(self):
+      return self._running_task
+    
+    @property
+    def next_task(self):
+      return self._next_task
+
+    @property
+    def check_list(self):
+      return [self._running_task, *self._next_task]
+    
+    @property
+    def check_list(self):
+      return [self._running_task, *self._next_task]
+    
+    def load_task_list(self, task_list):
+      for task in task_list:
+        task = Task(task) 
+        self._task_list.append(task)
+    
+    def set_running_task(self, task):
+      try:
+        # if there is task running & same task active ,then reject
+        if self._running_task != None and self._running_task.uuid == task.uuid:
+          return False
+
+        # save running task
+        self._prev_task = self._running_task
+        # clear next task list
+        self._next_task.clear()
+        self._running_task = task
+        self._running_task.run()
+
+        if self._prev_task != None:
+          # if previous task is still running, then need to close
+          if self._prev_task.status == 1:
+            self._prev_task.stop()
+          print('prev', 'run', self._prev_task.name, self._running_task.name)
+
+        for task_uuid in self._running_task.next:
+          _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
+          if _task != None:
+            self._next_task.append(_task)
+      except RuntimeError as e:
+        print(e)
+
+    def get_task(self, task_id):
+      return self._task_list[task_id]
+  

python/biopro/recording/file.py

@@ -8,6 +8,7 @@ import gc
 
 from biopro.util.json import JSON
 from biopro.util.stack import print_exception
+from biopro.util.logger import calculate_time
 from .data import RecordingData
 from .loader import *
 
@@ -19,6 +20,8 @@ from statistics import mean
 import random
 # from numba import jit
 
+from copy import copy
+
 def json_stringify(o) -> str:
     return _json_stringify(o, separators=(',', ':'))
 
@@ -370,6 +373,45 @@ class RecordingMetaFile(JsonSerialize):
             self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
             # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
         return None
+    
+    def update_subfile_time_size(self, database = None):
+        meta_data = {
+            'channels': str(self._channel_mask.channels()),
+            'size': str(self._size),
+            'time_duration': str(self._last_time),
+            'uuid': str(self._file_uuid),
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
+    
+    def update_subfile_raw(self, database = None):
+        meta_data = {
+            'raw_data': self._recording_sub_file,
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
+    
+    def update_subfile_mini(self, database = None):
+        meta_data = {
+            'mini_data': self._recording_sub_mini,
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
                 
     @property
     def filename(self) -> str:
@@ -517,11 +559,6 @@ class RecordingMetaFile(JsonSerialize):
             'start_time': str(_start_time),
         }
 
-        # if database is not None:
-        #     database.data_raw_create(self, f, raw_data, _channel)
-
-        # self._recording_file_ch[_channel]
-
         return f, raw_data
 
     def new_recording_mini(self, _channel: int, _start_time, scale, database = None) -> 'RecordingMini':
@@ -567,9 +604,6 @@ class RecordingMetaFile(JsonSerialize):
             'start_time': str(_start_time),
         }
 
-        # if database is not None:
-        #     database.data_mini_create(self, f, mini_data, _channel, scale)
-
         return f, mini_data
 
     def clear_recording_file(self):
@@ -628,15 +662,6 @@ class RecordingMetaFile(JsonSerialize):
             'device':        self._device,
         }
 
-        # d = self._device
-
-        # if d is not None:
-        #     ret['device'] = {
-        #         'device_name':    d.device_name,
-        #         'device_address': list(d.mac_address),
-        #         'serial_number':  d.serial_number.as_json(),
-        #     }
-
         return ret
 
 
@@ -792,14 +817,10 @@ class RecordingFile:
                 'end_time': str(_end_time),
                 'size': str(self._size)
             }
-            # if self._meta_file._id_db == 0:
-            #     _path = str(self._meta_file.filepath).replace('/', '^')
-            #     self._database.put_queue(['data_meta_id_get_by_path', _path])
-            #     # self._meta_file._id_db = self._database.put_queue(['data_meta_id_get_by_path', _path])
+
             if self._meta_file._id_db != 0:
                 _data['parent'] = self._meta_file._id_db
             self._database.put_queue(['data_raw_update', self._id_db, self._channel, _data])
-            # self._database.put_queue(['data_raw_update', self._id_db, self._channel, _data])
         self._status = False
         return None
 
@@ -965,10 +986,7 @@ class RecordingMini:
                 'end_time': str(_end_time),
                 'size': str(self._size)
             }
-            # if self._meta_file._id_db == 0:
-            #     _path = str(self._meta_file.filepath).replace('/', '^')
-            #     self._database.put_queue(['data_meta_id_get_by_path', _path])
-            #     # self._meta_file._id_db = self._database.put_queue(['data_meta_id_get_by_path', _path])
+
             if self._meta_file._id_db != 0:
                 _data['parent'] = self._meta_file._id_db
             self._database.put_queue(['data_mini_update', self._id_db, self._channel, _data])
@@ -996,7 +1014,8 @@ class RecordingFileWriter:
                  '_data_value_ch', '_close', '_data_mini_ch',
                  '_mini_scale_list', '_time_real_time', '_data_rl', '_data_db',
                  '_raw_save', '_mini_save', '_data_time_ch', '_data_value_ch_for_rl',
-                 '_data_time_ch_for_rl', '_device_id', '_send_data', '_data_mqtt_ch')
+                 '_data_time_ch_for_rl', '_device_id', '_send_data', '_data_mqtt_ch', '_id_db_save', '_raw_create_not_done',
+                 '_mini_create_not_done')
 
     def __init__(self, meta: RecordingMetaFile, device_id, database = None):
         self._meta = meta
@@ -1017,7 +1036,9 @@ class RecordingFileWriter:
 
         self._raw_save = {
             'id': {},
-            'data': {}
+            'data': {},
+            'end_time': {},
+            'size': {}
         }
         self._mini_save = {
             '10': {
@@ -1052,6 +1073,7 @@ class RecordingFileWriter:
         self._data_value_ch_for_rl = {}
         self._data_time_ch_for_rl = {}
         self._data_time_ch = {}
+        self._id_db_save = {}
 
         # mini data
         self._data_mini_ch = {}
@@ -1068,12 +1090,15 @@ class RecordingFileWriter:
 
         # splitting
         self.splitting_threshold_time = 30 * 60 * 1000  # one minute
-        self.splitting_threshold_size = 16 * 16 * 1024  #  16 * 16KB
+        self.splitting_threshold_size = 16 * 1024  #  16 * 16KB
 
         self._writer_batch_size = 8192 
 
         self._splitting_size = None
 
+        self._raw_create_not_done = True
+        self._mini_create_not_done = True
+
 
     @property
     def meta_file(self) -> RecordingMetaFile:
@@ -1123,7 +1148,7 @@ class RecordingFileWriter:
                     self._meta._size += self._recording_file_dict[ch]._size
             # self._data_db.clear()
             if self._database is not None:
-                self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
+                self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data'], self._id_db_save])
                 # self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
             self._recording_file_dict.clear()
         for scale in self._mini_scale_list:
@@ -1289,7 +1314,8 @@ class RecordingFileWriter:
                     self._data_db[c].append(str(v))
                     self._time_now = int(t)
         return
-
+    
+    # @calculate_time(1)
     def write(self, data: Union[bytes, RecordingData, List[bytes], List[RecordingData]], mqtt_thread) -> int:
         # check size
         ths = self.splitting_threshold_size
@@ -1348,42 +1374,54 @@ class RecordingFileWriter:
                 
                 self.get_data_iter(d, mqtt_thread)
 
-            data_save = False
-            mini_save = False
             if len(self._recording_file_dict) > 0:
                 for ch in self._data_db.keys():
                     if self._time_now - self._time_real_time[ch] > 1000000:
                         self._send_data[ch] = True
                         self._time_real_time[ch] = self._time_now
-                    # # if self._time_now - self._time_real_time[ch] > 500000:
-                    # self._data_rl[ch].append(str(self._time_now))
-                    # mes = ' '.join(self._data_rl[ch])
-                    # # print(mes)
-                    # # if mqtt_thread is not None:
-                    # #     mqtt_thread.publish('data_server/device_data_stream/' + str(self._device_id) + '/' + str(ch), mes)
-                    # # mqtt_queue.put([self._device_id, ch, mes])
-                    # mqtt_thread[ch].on_message(mes)
-                    # self._data_rl[ch].clear()
-                    # # self._time_real_time[ch] = self._time_now
+
+            for ch in self._recording_file_dict:
+                if self._recording_file_dict[ch]._id_db == 0:
+                    return None
+            
+            for ch in self._data_db.keys():
+                for scale in self._mini_scale_list:
+                    if  self._recording_mini_dict[str(scale)][ch]._id_db == 0:
+                        return None
+            
+            if self._raw_create_not_done :
+                self._raw_create_not_done = False
+                self._meta.update_subfile_raw(database = self._database)
+            
+            if self._mini_create_not_done :
+                self._mini_create_not_done = False
+                self._meta.update_subfile_mini(database = self._database)
+
+            data_save = False
+            mini_save = False
+            if len(self._recording_file_dict) > 0:
+                for ch in self._data_db.keys():
                     if self._time_now - self._time[ch] > 5000000:
                         if self._recording_file_dict[ch]._status:
                             _data = ' '.join(self._data_db[ch])
                             write_sz = self._recording_file_dict[ch].write(_data, self._channel_list)
-                            sz = sz + write_sz
                             self._raw_save['data'][ch] = _data
                             self._raw_save['id'][ch] = self._recording_file_dict[ch]._id_db
-                            data_save = True
+                            self._raw_save['end_time'][ch] = self._time_now
+                            self._raw_save['size'][ch] = self._recording_file_dict[ch]._size
                             self._data_db[ch].clear()
                             self._time[ch] = self._time_now
-                            self._splitting_size += sz
                             self._meta._last_time = self._time_now
-                            self._recording_file_dict[ch].update_endtime(self._time_now)
+                            self._splitting_size += write_sz
+                            data_save = True
                     if len(self._data_mini_ch[ch]['1000']['mean']) >= 10:
                         mini_save = True
                         for scale in self._mini_scale_list:
+                            str_mean = [str(int) for int in self._data_mini_ch[ch][str(scale)]['mean']]
+                            data_mean = str(self._data_mini_ch[ch][str(scale)]['start_time']) + ' ' + ' '.join(str_mean) + '"***"'
                             self._mini_save[str(scale)]['id'][ch] = self._recording_mini_dict[str(scale)][ch]._id_db
                             self._mini_save[str(scale)]['start_time'][ch] = str(self._data_mini_ch[ch][str(scale)]['start_time'])
-                            self._mini_save[str(scale)]['data_mean'][ch] = self._data_mini_ch[ch][str(scale)]['mean'].copy()
+                            self._mini_save[str(scale)]['data_mean'][ch] = data_mean
                             # self._mini_save[str(scale)]['data_random'][ch] = self._data_mini_ch[ch][str(scale)]['random'].copy()
                             # self._mini_save[str(scale)]['data_bar'][ch] = self._data_mini_ch[ch][str(scale)]['bar'].copy()
                             self._recording_mini_dict[str(scale)][ch].write(self._mini_save[str(scale)]['data_mean'][ch])
@@ -1394,26 +1432,25 @@ class RecordingFileWriter:
 
                 if data_save is True:
                     if self._database is not None:
-                        self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
-                        self._meta.update_subfile(database = self._database)
+                        recording_input = ['data_raw_recording_new', copy(self._raw_save['id']), copy(self._channel_list), copy(self._raw_save['data']), copy(self._raw_save['end_time']), copy(self._raw_save['size'])]
+                        self._database.put_queue(recording_input)
+                        self._meta.update_subfile_time_size(database = self._database)
                 if mini_save is True:
                     if self._database is not None:
                         for scale in self._mini_scale_list:
-                            self._database.put_queue(['data_mini_recording', self._mini_save[str(scale)]['id'], self._channel_list, self._mini_save[str(scale)]['start_time'], self._mini_save[str(scale)]['data_mean']])
-                        self._meta.update_subfile(database = self._database)
-            
-
+                            self._database.put_queue(['data_mini_recording_new', copy(self._mini_save[str(scale)]['id']), self._channel_list, copy(self._mini_save[str(scale)]['data_mean'])])
+                        self._meta.update_subfile_time_size(database = self._database)
         del data
 
         return None
 
 
     def _switch_recording_file(self):
-        # if self._recording_file is not None:
-        #     self._recording_file.close()
-        
+        self._raw_create_not_done = True
+
         if len(self._recording_file_dict) > 0:
             for ch in self._recording_file_dict.keys():
+                self._id_db_save[ch] = self._recording_file_dict[ch]._id_db
                 self._recording_file_dict[ch].close(self._time_now)
                 self._meta._size += self._recording_file_dict[ch]._size
                 
@@ -1429,16 +1466,16 @@ class RecordingFileWriter:
 
         if self._database is not None:
             self._database.put_queue(['data_raw_create', raw_data_dict, self._channel_list, self._device_id])
-            # self._database.put_queue(['data_raw_create', self._meta, self._recording_file_dict, raw_data_dict, self._channel_list])
 
         self._meta._last_time = self._time_now
-        self._meta.update_subfile(database = self._database)
+        # self._meta.update_subfile(database = self._database)
 
         self._splitting_size = 0
 
         return None
 
     def _switch_recording_mini(self, scale):
+        self._mini_create_not_done = True
         
         if len(self._recording_mini_dict[str(scale)]) > 0:
             for ch in self._recording_mini_dict[str(scale)].keys():
@@ -1456,14 +1493,12 @@ class RecordingFileWriter:
 
         if self._database is not None:
             self._database.put_queue(['data_mini_create', mini_data_dict, self._channel_list, scale, self._device_id])
-            # self._database.put_queue(['data_mini_create', self._meta, self._recording_mini_dict[str(scale)], mini_data_dict, self._channel_list, scale])
             
         self._meta._last_time = self._time_now
-        self._meta.update_subfile(database = self._database)
+        # self._meta.update_subfile(database = self._database)
         return None
 
     def update_meta_id(self, _id):
-        # print('update meta')
         self._meta._id_db = _id
         return None