[update] change check time to 1

This reverts commit cd60e14cbe.

python/biopro/api/controller.py

@@ -18,9 +18,10 @@ class ControllerAPI():
     @staticmethod
     def getByMac(mac_address):
         try:
-            ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
-            if ret.status_code == 200:
-                return ret.json()
+            if mac_address != None:
+                ret = requests.get(API_URL + 'api/controller/get_by_mac/' + mac_address, headers= AuthAPI.get_key())
+                if ret.status_code == 200:
+                    return ret.json()
         except (requests.exceptions.ConnectionError, json.decoder.JSONDecodeError) as e:
             print('get controller fail', e)
         return []

python/biopro/controller.py

@@ -1576,6 +1576,11 @@ class ControlAPI(metaclass=Router):
         should handle this exit code and re-run server process.
         """
         raise NotImplementedError()
+    
+    def run_project(self, project) -> bool:
+        print('create_project', project)
+        self._project_manager.create(project)
+        return False
 
 
 # noinspection PyAbstractClass

python/biopro/device/manager.py

@@ -562,6 +562,7 @@ class DeviceManager(MasterDevice, Synchronized):
 
     @logging_verbose
     def get_device(self, device: Union[int, DeviceInfo]) -> Optional[CompletedDevice]:
+        print('get_device', device)
         """get connected device
 
         :param device: device ID or response info
@@ -574,7 +575,7 @@ class DeviceManager(MasterDevice, Synchronized):
 
         elif isinstance(device, str):
             for slave in self._device:
-                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device:
+                if ':'.join('{:02x}'.format(b) for b in slave.mac_address) == device.lower():
                     return slave
 
         elif isinstance(device, DeviceInfo):

python/biopro/devlib/data.py

@@ -882,20 +882,14 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        current = struct.unpack('>i', data[1:5])[0]  # unit: 1/1000 nA
-        voltage = struct.unpack('>i', data[5:9])[0]  # unit: mV
-        impedance = struct.unpack('>i', data[9:13])[0]  # unit: kOm
-        time_stamp: float = struct.unpack('<I', data[13:17])[0]  # unit: ms
-        cycle_number = struct.unpack('>H', data[17:19])[0]
+        time_stamp: float = struct.unpack('<I', data[1:5])[0]  # unit: ms 0x18030000
+        current = struct.unpack('<i', data[5:9])[0]  # unit: nA
+        voltage = struct.unpack('<i', data[9:13])[0]  # unit: uV
+        impedance = struct.unpack('<i', data[13:17])[0]  # unit: mOm
+        cycle_number = struct.unpack('<H', data[17:19])[0]
         finish_mode_falg = data[19]
 
-        mem_wrong_information = struct.unpack('>i', data[40:40+4])[0]
-
-        # print('decode', list(data[20:]))
-        mem_wrong = data[40]
-        mem_retry_cnt = data[41]
-        mem_green_wrong = data[42]
-        mem_green_retry_cnt = data[43]
+        mem_wrong_information = struct.unpack('<i', data[40:40+4])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
         ram_num = data[44]
         broken_flag = data[-1]
 
@@ -917,10 +911,13 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                # print('|', time_stamp, '|', delta, '|', current, '|', voltage, '|', impedance,
+                # print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
+                #       '|', current, '|', voltage, '|', impedance,
                 #       '|', cycle_number, '|', finishMode, '@', str(self.device))
+
                 # print('|', '{:10}'.format(time_stamp),
-                #       '|', '{:10}'.format(delta),
+                #       '|', '{:4}'.format(delta),
+                #       '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
                 #       '|', '{:10}'.format(current),
                 #       '|', '{:10}'.format(voltage),
                 #       '|', '{:10}'.format(impedance),
@@ -928,13 +925,9 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 #       '|', '{:1}'.format(finishMode),
                 #       '@', str(self.device), '|')
 
-                # print('|', '{:5}'.format(mem_wrong),
-                #       '|', '{:5}'.format(mem_retry_cnt),
-                #       '|', '{:5}'.format(mem_green_wrong),
-                #       '|', '{:5}'.format(mem_green_retry_cnt),
-                #       '|', '{:5}'.format(mem_wrong_information),
-                #       '|', '{:5}'.format(ram_num),
-                #       '|', '{:5}'.format(broken_flag),
+                # print('|', '{:5}'.format(mem_wrong_information),
+                #       '|', '{:2}'.format(ram_num),
+                #       '|', '{:2}'.format(broken_flag),
                 #       '@', str(self.device), '|')
                 pass
 
@@ -951,14 +944,15 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         ret.append_data(3, cycle_number)
 
         # memoryboard information
-        # ret.append_data(4, mem_wrong)
-        # ret.append_data(5, mem_retry_cnt)
-        # ret.append_data(6, mem_green_wrong)
-        # ret.append_data(7, mem_green_retry_cnt)
         ret.append_data(4, ram_num)
         ret.append_data(5, broken_flag)
-        ret.append_data(6, mem_wrong_information)
-        # ret.append_data(4, ram_num)
+        try:
+            ret.append_data(6, mem_wrong_information)
+            # print('append_data success, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+        except:
+            print('append_data fail, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
+
+
     
         if cycle_number != self._cycle_number:
             # notify cycle_number change

python/biopro/devlib/library.py

@@ -1082,6 +1082,11 @@ class CompletedDevice(Device):
         :return: parameter V value
         """
         return self._configuration.get_parameter(name, False)
+    
+    def set_multi_parameters(self, parameter):
+        for (name, value) in parameter[0].items():
+            if name != 'target':
+                self.set_parameter(name, value)
 
     def set_parameter(self, name: str, value: Union[int, str]):
         """replace parameter value with *value*

python/biopro/impl/ext_mem.py

@@ -24,8 +24,10 @@ def zero_buffer(size: int) -> List[int]:
     return [0] * size
 
 class MultiExtMemSpiInterface(LowLevelHardwareInterface):
-    MEM_INS_MARKED = [MEM_INS_WRITE, 0, 2, 1, 1]
-    MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
+    MEM_INS_MARKED1 = [MEM_INS_WRITE, 0, 2, 0x5A, 0xA5]
+    MEM_INS_MARKED2 = [MEM_INS_WRITE, 0, 6, 0x5A, 0xA5]
+    MEM_INS_MARKED3 = [MEM_INS_WRITE, 0, 10, 0x5A, 0xA5]
+    # MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
 
     __slots__ = ('_selector', '_wait_for_first_data', '_spi', '_tx_buffer_header', '_tx_buffer_data',
                  'pin_busy', 'pin_mem_req', 'pin_mem_sel', 'pin_ram_sel',
@@ -48,7 +50,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
 
         # buffer
-        self._tx_buffer_header = [0] * 11
+        self._tx_buffer_header = [0] * 19
         self._tx_buffer_data = [0] * (self._single_data_len * 10 + 3)
 
         # memory control pin
@@ -165,6 +167,29 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         print("read red data times", self._read_red_times)
         return data
 
+    def _print_ram_all_data(self):
+        addr = 0
+        red_length = int(7000 / 2)
+        tx_temp = [0] * red_length
+
+        while True:
+            tx_temp[0] = MEM_INS_READ
+            tx_temp[1] = ((addr >> 8) & 0xFF)
+            tx_temp[2] = (addr & 0xFF)
+
+            ram_data = []
+            ram_data = self._spi.send_byte(tx_temp)
+            ram_data[0:3] = [255, 255, 255]
+            print(list(ram_data), len(ram_data), addr)
+            addr += len(ram_data) - 3
+
+            if (7000 < addr + len(ram_data)):
+                del ram_data
+                break
+        print()
+
+        return
+
     def recv_memory(self, device: int) -> Optional[bytes]:
         self.pin_busy.output(False)
 
@@ -191,7 +216,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                 self._head_wrong_cnt[device] = self._head_wrong_cnt[device] + 1
                 if (self._head_wrong_cnt[device] <= 5): # print 5 times
                     print('data_first[0:3] != [255, 255, 255], device:', device, ',', self._head_wrong_cnt[device], 'times')
-                    print(list(data[0:7]))
+                    print(list(data[0:15]))
 
             data[0:3] = [255, 255, 255]
             # ----------------------------------------------------------------------------------------------
@@ -233,53 +258,70 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             # green_data = data
             # print("_[Debug] @ spi green data = ", green_data)
 
-            length = (data[3] << 8) | data[4]
-            header = data[7]
-            elite_data_len = data[9]
+            green_data_section1 = data[3:7]
+            green_data_section2 = data[7:11]
+            green_data_section3 = data[11:15]
+
+            if green_data_section1 == green_data_section2:
+                green_data_section = green_data_section1
+
+            elif(green_data_section2 == green_data_section3 or green_data_section1 == green_data_section3):
+                print("green data not equal: = ", data[3:15])
+                print("green data print:", data, device, datetime.now())
+                green_data_section = green_data_section3
+
+            else:
+                print("green data not equal: = ", data[3:15])
+                print("green data print:", data, device, datetime.now())
+                green_data_section = green_data_section3 # use last data
+
+            length = (green_data_section[0] << 8) | green_data_section[1]
+            header = data[15]
+            elite_data_len = data[17]
+
+            if length <= 12:
+                if length < 12:
+                    print("length < 12")
+                    print("green data print:", data, device, datetime.now())
+
+                if length == 0:
+                    self._print_ram_all_data()
 
-            if length <= 4:
-                # print("length <= 4")
-                # print("green data print:", data, device, datetime.now())
                 return None
 
-            if data[5] != 0 or data[6] != 0:
+            if green_data_section[2] != 0xA5 or green_data_section[3] != 0x5A:
                 # give a default length if the data header did not update
-                length = 7000
-                print("green data: is not [0,0], = ", data[5:7])
+                print("green data: is not [0xA5, 0x5A], = ", data[5:7])
                 print("green data print:", data, device, datetime.now())
                 return None
 
-            if (length >= 7000):
+            if (length >= 4000):
                 flag_print = True
                 print("green data: big length:", length)
 
             if (header != 255):
                 flag_print = True
                 print("green data: header is not 255: ", header)
+                self._print_ram_all_data()
 
             if (elite_data_len != self._elite_data_len):
                 flag_print = True
                 print("green data: length is not", self._elite_data_len, ": ", elite_data_len)
 
             if (flag_print):
-                print("green data print:", data, device, datetime.now())
+                print("green data print:", data, device, datetime.now(), '\n')
 
             # neulive
             # address += len(data) - 11
             # tx_d = self._tx_buffer_data
             # red_length = len(tx_d)
 
-            # elite read all data of ram
-            # address = 4
-            # red_length = length - 1 
-            # tx_d = [0] * red_length
-
-            address = 4
+            address = 12
             red_length = int(length / 2)
             tx_d = [0] * red_length
 
             # elite read len(_tx_buffer_data) byte
-            # address = 4
+            # address = 12
             # tx_d = self._tx_buffer_data
 
             while True:
@@ -319,9 +361,16 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
                     address += len(data) - 3
                     del data
 
-            # print("_[Debug] @ spi recv data rx = ")
+            # last_index = 0
+            # print("_[Debug] @ spi recv data rx, ram_select:", self._pin_ram_sel_value[device], ",", datetime.now())
             # for i in range(0, len(rx), self._single_data_len):
-            #     print(rx[i:i+self._single_data_len])
+            #     last_index = i
+            #     # print(rx[i:i+self._single_data_len])
+            #     if i == 0:
+            #         print(rx[0:8], 'ram:', rx[47])
+
+            # if last_index != 0:
+            #     print(rx[last_index:last_index+8], 'ram:', rx[last_index+47])
             # print()
 
             # /* 
@@ -334,7 +383,9 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             #  *                                                                  */
 
             # mark read
-            self._spi.send_byte(self.MEM_INS_MARKED)
+            self._spi.send_byte(self.MEM_INS_MARKED1)
+            self._spi.send_byte(self.MEM_INS_MARKED2)
+            self._spi.send_byte(self.MEM_INS_MARKED3)
 
         except BaseException as e:
             print(e)

python/biopro/project/action.py

@@ -0,0 +1,65 @@
+
+class Action():
+    def __init__(self, task, action_id, action):
+        self._task = task
+        self._id:str = action_id
+        self._type:str = action['type']
+        self._target:str = action['target']
+        self._condition_list:list[str] = action['condition']
+        self._duration = action.get('duration', None)
+        self._goto = action.get('goto', None)
+        self._cycle = action.get('cycle', None)
+        
+        self._instruction = None
+
+        self.update_instruction()
+    
+    @property
+    def type(self):
+        return self._type
+
+    def update_instruction(self):
+        self._instruction = {
+            "device_instruction": {
+                "header": "call_instruction",
+                "device": self._target,
+                "arguments": {
+                    "instruction": self._type,
+                }
+            },
+            "device_parameter": {
+                "header": "set_multi_parameters",
+                "device": self._target,
+                "arguments": {
+                    "parameter": self._task.get_parameter_set_by_device(self._target),
+                }
+            },
+            "device_recording_file_name": {
+                "header": "update_recording_file_name_info",
+                "device":  self._target,
+                "arguments": {
+                    "content": self._task.file_name,
+                }
+            },
+            "device_parent": {
+                "header": "update_parent_info",
+                "device":  self._target,
+                "arguments": {
+                    "content": self._task.parent
+                }
+            }
+        }
+
+    def get_condition_list(self):
+        return self._condition_list
+
+    def get_instruction(self, value):
+        return self._instruction[value]
+
+    def get_instruction_list(self):
+        instruction_set = {
+            'start': ['device_parent', 'device_recording_file_name', 'device_parameter', 'device_instruction'],
+            'stop': ['device_instruction'],
+        }
+
+        return map(self.get_instruction, instruction_set[self._type])

python/biopro/project/condition.py

@@ -0,0 +1,75 @@
+from datetime import datetime
+from time import time
+
+class Condition():
+    def __init__(self, id, condition):
+        print('condition', id, condition)
+        self._id = id
+        self._type = condition['type']
+        self._comparsion = condition['comparsion']
+        self._value = condition['value']
+    
+    @property
+    def id(self):
+        return self._id
+    @property
+    def type(self):
+        return self._type
+    @property
+    def comparsion(self):
+        return self._comparsion
+    @property
+    def value(self):
+        return self._value
+    
+    def set_comparsion(self, comparsion):
+        self._comparsion = comparsion
+
+    def set_type(self, type):
+        self._type = type    
+    
+    def set_value(self, value):
+        self._value = value
+
+    def compareWith(self, operator:str, x, y) -> bool:
+        cases = {
+            "equal": lambda a, b: a == b,
+            "bigger": lambda a, b: a > b,
+            "smaller": lambda a, b: a < b,
+        }
+
+        # print('x','y',x, y,type(x),type(y))
+        return cases[operator](x, y)
+
+    def match_or_not(self, **kwargs):
+       return self.method_mapping(self.type)()
+       
+    def absolute_time(self, **kwargs):
+        now = time()
+        time_condition = self.datetime_to_timestamp(self.str_to_datetime(self._value))
+
+        return self.compareWith(self.comparsion, int(now), int(time_condition))
+
+    def relative_time(self, **kwargs):
+        now = time()
+    
+    def device(self, **kwargs):
+        print('device')
+    
+    def task_status(self, **kwargs):
+        print('task_status')
+
+    def method_mapping(self, method_name):
+        methods = {
+        "relative_time": self.relative_time,
+        "absolute_time": self.absolute_time,
+        "device": self.device,
+        "task_status": self.task_status,
+        }
+        return methods[method_name]
+
+    def str_to_datetime(self, time_str):
+        return datetime.strptime(time_str,'%Y-%m-%dT%H:%M')
+
+    def datetime_to_timestamp(self, date):
+        return datetime.timestamp(date)

python/biopro/project/project.py

@@ -0,0 +1,78 @@
+from .task import Task
+from .task_manager import TaskManager
+import sys
+import json
+import threading
+import time
+from datetime import datetime
+from collections import deque
+from biopro.device.manager import DeviceManager
+from biopro.text import *
+
+class Project(threading.Thread):
+  def __init__(self, project, device_manager: DeviceManager, mqttThread = None, name="project"):
+    super(Project, self).__init__(name = name)
+    self._project = project
+    self._device_manager = device_manager
+    self._mqtt_thread = mqttThread
+    self._time_interval = 1
+    self._start_time = None
+
+    self._task_manager = TaskManager(self._project['taskList'])
+
+    self._start_time = None
+    
+  @property
+  def desc(self) -> str:
+    return self._project['desc']
+  
+  @property
+  def status(self) -> str:
+    return self._project['status']
+
+  @property
+  def device(self) -> list:
+    return self._project['deviceList']
+
+  @property
+  def task(self) -> list:
+    return self._task_manager.get()
+
+  @property
+  def get_current_task(self) -> str:
+    return self._task_manager.get_current_task()
+
+  def run(self):
+      self._start_time = time.time()
+
+      while True:
+        # current task
+        for task in self._task_manager.get_check_task_list():
+          # [<match_condition>, ...]
+          match_condition_list = task.check_condition('time')
+          # [[<match_action>, ...], ...]
+          match_action_list = task.get_match_action_list(match_condition_list)
+          
+          for action_list in match_action_list:
+            for action in action_list:
+              if action.type == 'start':
+                self._task_manager.set_current_task(task)
+              task.do_action(action)
+              
+          while len(task.instruction_list) > 0:
+            instruction = task.instruction_list.pop(0)
+            if instruction.get('device', None) != None:
+              device = self._device_manager.get_device(self.device[instruction['device']]['connectDevice']['device_address'])
+
+              if device is None:
+                  raise RuntimeError(DEVICE_NOT_FOUND, device)
+                
+              # print(instruction['header'], *instruction['arguments'].values())
+              getattr(device, instruction['header'])(*instruction['arguments'].values()) 
+
+        time.sleep(self._time_interval)
+  def stop(self):
+    return
+
+  def close(self):
+    return

python/biopro/project/project_manager.py

@@ -0,0 +1,33 @@
+from io import StringIO
+from json import loads as json_parse, dumps as _json_stringify
+from typing import Dict, Optional, Any
+import paho.mqtt.client as mqtt
+from .project import Project
+from biopro.device.manager import DeviceManager
+
+def json_stringify(o: Any) -> str:
+    return _json_stringify(o, separators=(',', ':'))
+
+class ProjectManager():
+    def __init__(self, device_manager: DeviceManager, mqtt_thread=None) :
+        self._project_list = []
+        self._mqtt_thread =  mqtt_thread
+        self._device_manager = device_manager
+    
+    def create(self, project):
+      new_project = Project(project, self._device_manager, self._mqtt_thread)
+      self._project_list.append(new_project)
+      return new_project
+    
+    def remove(self, index):
+      self._project_list[index].stop()
+      del self._project_list[index]
+
+    def get(self):
+      return self._project_list
+
+    def run(self, project):
+      project.start()
+
+    def stop(self, project):
+      project.stop()

python/biopro/project/task.py

@@ -0,0 +1,168 @@
+from .condition import Condition
+from .action import Action
+from time import time
+
+class Task:
+  def __init__(self, task):
+    self._task = task
+
+    self._condition_list = []
+    self._action_list = []
+
+    self._start_time = time()
+    self._idle_time = []
+    self._period = None
+    self._next_time = None
+    self._last_time = None
+
+    self._instruction_list = []
+
+    self.setup()
+  
+  def setup(self) -> None:
+    # add condition
+    for key, condition in self._task['condition'].items():
+      new_condition = Condition(key, condition)
+      self._condition_list.append(new_condition)
+    
+    # add action
+    for key, action in self._task['action'].items():
+      new_action = Action(self, key, action)
+      self._action_list.append(new_action)
+
+  @property
+  def id(self) -> str:
+    return self._task['id']
+  
+  @property
+  def file_name(self):
+    return self._task['name']
+
+  @property
+  def parent(self):
+    return self._task.get('parent', {"folder": [2]})
+
+  @property
+  def instruction_list(self):
+    return self._instruction_list
+
+  @property
+  def cycle(self) -> int:
+    return self._task['cycle']
+
+  @property
+  def order(self) -> int:
+    return self._task['order']
+
+  @property
+  def max_cycle(self) -> int:
+    return self._task['max_cycle']
+  
+  @property
+  def devices(self) -> dict:
+    return self._task['devices']
+
+  @property
+  def devices_id(self) -> list:
+    return [device_id for device_id in self.devices]
+  
+  @property
+  def events(self) -> list:
+    return self._task['events']
+
+  @property
+  def triggers(self) -> list:
+    return self._task['triggers']
+  
+  @property
+  def parameter_set(self) -> list:
+    return self._task['parameterSet']
+  
+  @property
+  def instructions(self) -> list:
+    return self._task['instructions']
+
+  @property
+  def conditions(self) -> list:
+    return self._task['conditions']
+  
+  @property
+  def actions(self) -> list:
+    return self._task['actions']
+
+  @property
+  def condition_list(self) -> list:
+    return self._condition_list
+
+  @property
+  def status(self) -> str:
+    return self._task['status']
+  
+  @property
+  def uuid(self) -> str:
+    return self._task['uuid']
+  
+  @property
+  def next(self) -> str:
+    return self._task['next']
+    
+  def get_parameter_set_by_device(self, device):
+     return [parameter_set for parameter_set in self.parameter_set.values() if device == parameter_set['target']]
+
+  def get_parameter(self, name_or_value, device):
+    name_list = []
+    value_list = []
+    for parameter in self.get_parameter_set_by_device(device):
+      for key, value in parameter.items():
+        if key != 'target':
+          name_list.append(key)
+          value_list.append(str(value))
+
+    return '|'.join(name_list) if name_or_value == 'name' else '|'.join(value_list)
+  
+  def run(self):
+    self._status = 'running'
+    self._start_time = time()
+
+  def pause(self):
+    self._status = 'pause'
+
+  def set_cycle(self, cycle):
+    self._cycle = cycle
+
+  def set_status(self, status):
+    self._status = status
+  
+  def start(self):
+    self.set_status('running')
+  
+  def stop(self):
+    if self.status == 'running':
+      self.do_action('stop')
+    self.set_status('idle')
+
+  def done(self):
+    self.set_status('done')
+  
+  def end(self):
+    self.set_status('end')
+
+  def get_match_action_list(self, match_condition_list):
+    return map(lambda condition: [x for x in self._action_list if condition.id in x.get_condition_list()], match_condition_list)
+
+  def do_action(self, action): 
+    # # match_action = [x for x in self._action_list if condition_id in x.get_condition_list()]
+
+    # for action in match_action:
+    for instruction in action.get_instruction_list():
+      self._instruction_list.append(instruction)
+
+  def status_mapping(self, status):
+    statuses = {
+      "start": self.task_start,
+      "done": self.task_done,
+    }
+    return statuses[status]
+
+  def check_condition(self, type):
+    return [condition for condition in self._condition_list if  condition.match_or_not()]

python/biopro/project/task_manager.py

@@ -0,0 +1,56 @@
+from json import loads as json_parse, dumps as _json_stringify
+from typing import Dict, Optional, Any
+from xml.dom.expatbuilder import parseString
+import paho.mqtt.client as mqtt
+from biopro.text import *
+from .task import Task
+
+_RUNTIME_COMPILE = False
+
+def json_stringify(o: Any) -> str:
+    return _json_stringify(o, separators=(',', ':'))
+
+class TaskManager():
+    def __init__(self, task_list):
+      self._current_task = None
+      self._task_list = []
+      self._need_to_check_task_list = []
+
+      for task in task_list:
+        task = Task(task) 
+        self._task_list.append(task)
+      
+      self.set_current_task(self._task_list[0])
+      self._current_task.run()
+    
+    def remove(self, index):
+      pass
+
+    def get_task(self, task_id):
+      return self._task_list[task_id]
+
+    def get_check_task_list(self):
+      return self._need_to_check_task_list
+
+    def get_current_task(self) -> Task:
+      return self._current_task
+
+    def get_next_task(self):
+      return  self._current_task.next
+
+    def set_current_task(self, task):
+      try:
+        if self._current_task != None and self._current_task.id != task.id:
+          self._current_task.stop()
+
+        self._current_task = task
+        self._need_to_check_task_list = []
+        # append current task
+        self._need_to_check_task_list.append(self._current_task)
+
+        # append next task
+        for task_uuid in self._current_task.next:
+          task = next((task for task in self._task_list if task.uuid == task_uuid), None)
+          self._need_to_check_task_list.append(task)
+      except Exception as e:
+        print(e)

python/biopro/recording/file.py

@@ -8,6 +8,7 @@ import gc
 
 from biopro.util.json import JSON
 from biopro.util.stack import print_exception
+from biopro.util.logger import calculate_time
 from .data import RecordingData
 from .loader import *
 
@@ -19,6 +20,8 @@ from statistics import mean
 import random
 # from numba import jit
 
+from copy import copy
+
 def json_stringify(o) -> str:
     return _json_stringify(o, separators=(',', ':'))
 
@@ -370,6 +373,45 @@ class RecordingMetaFile(JsonSerialize):
             self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
             # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
         return None
+    
+    def update_subfile_time_size(self, database = None):
+        meta_data = {
+            'channels': str(self._channel_mask.channels()),
+            'size': str(self._size),
+            'time_duration': str(self._last_time),
+            'uuid': str(self._file_uuid),
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
+    
+    def update_subfile_raw(self, database = None):
+        meta_data = {
+            'raw_data': self._recording_sub_file,
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
+    
+    def update_subfile_mini(self, database = None):
+        meta_data = {
+            'mini_data': self._recording_sub_mini,
+        }
+        _path = str(self._filepath).replace('/', '^')
+
+        if database is not None :
+            self._database = database
+            self._database.put_queue(['data_meta_write', meta_data, self._device_id, str(self._file_uuid), self._id_db])
+            # database.put_queue(['data_meta_write', self, meta_data, _path, self._id_db])
+        return None
                 
     @property
     def filename(self) -> str:
@@ -517,11 +559,6 @@ class RecordingMetaFile(JsonSerialize):
             'start_time': str(_start_time),
         }
 
-        # if database is not None:
-        #     database.data_raw_create(self, f, raw_data, _channel)
-
-        # self._recording_file_ch[_channel]
-
         return f, raw_data
 
     def new_recording_mini(self, _channel: int, _start_time, scale, database = None) -> 'RecordingMini':
@@ -567,9 +604,6 @@ class RecordingMetaFile(JsonSerialize):
             'start_time': str(_start_time),
         }
 
-        # if database is not None:
-        #     database.data_mini_create(self, f, mini_data, _channel, scale)
-
         return f, mini_data
 
     def clear_recording_file(self):
@@ -628,15 +662,6 @@ class RecordingMetaFile(JsonSerialize):
             'device':        self._device,
         }
 
-        # d = self._device
-
-        # if d is not None:
-        #     ret['device'] = {
-        #         'device_name':    d.device_name,
-        #         'device_address': list(d.mac_address),
-        #         'serial_number':  d.serial_number.as_json(),
-        #     }
-
         return ret
 
 
@@ -792,14 +817,10 @@ class RecordingFile:
                 'end_time': str(_end_time),
                 'size': str(self._size)
             }
-            # if self._meta_file._id_db == 0:
-            #     _path = str(self._meta_file.filepath).replace('/', '^')
-            #     self._database.put_queue(['data_meta_id_get_by_path', _path])
-            #     # self._meta_file._id_db = self._database.put_queue(['data_meta_id_get_by_path', _path])
+
             if self._meta_file._id_db != 0:
                 _data['parent'] = self._meta_file._id_db
             self._database.put_queue(['data_raw_update', self._id_db, self._channel, _data])
-            # self._database.put_queue(['data_raw_update', self._id_db, self._channel, _data])
         self._status = False
         return None
 
@@ -965,10 +986,7 @@ class RecordingMini:
                 'end_time': str(_end_time),
                 'size': str(self._size)
             }
-            # if self._meta_file._id_db == 0:
-            #     _path = str(self._meta_file.filepath).replace('/', '^')
-            #     self._database.put_queue(['data_meta_id_get_by_path', _path])
-            #     # self._meta_file._id_db = self._database.put_queue(['data_meta_id_get_by_path', _path])
+
             if self._meta_file._id_db != 0:
                 _data['parent'] = self._meta_file._id_db
             self._database.put_queue(['data_mini_update', self._id_db, self._channel, _data])
@@ -996,7 +1014,8 @@ class RecordingFileWriter:
                  '_data_value_ch', '_close', '_data_mini_ch',
                  '_mini_scale_list', '_time_real_time', '_data_rl', '_data_db',
                  '_raw_save', '_mini_save', '_data_time_ch', '_data_value_ch_for_rl',
-                 '_data_time_ch_for_rl', '_device_id', '_send_data', '_data_mqtt_ch')
+                 '_data_time_ch_for_rl', '_device_id', '_send_data', '_data_mqtt_ch', '_id_db_save', '_raw_create_not_done',
+                 '_mini_create_not_done')
 
     def __init__(self, meta: RecordingMetaFile, device_id, database = None):
         self._meta = meta
@@ -1017,7 +1036,9 @@ class RecordingFileWriter:
 
         self._raw_save = {
             'id': {},
-            'data': {}
+            'data': {},
+            'end_time': {},
+            'size': {}
         }
         self._mini_save = {
             '10': {
@@ -1052,6 +1073,7 @@ class RecordingFileWriter:
         self._data_value_ch_for_rl = {}
         self._data_time_ch_for_rl = {}
         self._data_time_ch = {}
+        self._id_db_save = {}
 
         # mini data
         self._data_mini_ch = {}
@@ -1068,12 +1090,15 @@ class RecordingFileWriter:
 
         # splitting
         self.splitting_threshold_time = 30 * 60 * 1000  # one minute
-        self.splitting_threshold_size = 16 * 16 * 1024  #  16 * 16KB
+        self.splitting_threshold_size = 16 * 1024  #  16 * 16KB
 
         self._writer_batch_size = 8192 
 
         self._splitting_size = None
 
+        self._raw_create_not_done = True
+        self._mini_create_not_done = True
+
 
     @property
     def meta_file(self) -> RecordingMetaFile:
@@ -1123,7 +1148,7 @@ class RecordingFileWriter:
                     self._meta._size += self._recording_file_dict[ch]._size
             # self._data_db.clear()
             if self._database is not None:
-                self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
+                self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data'], self._id_db_save])
                 # self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
             self._recording_file_dict.clear()
         for scale in self._mini_scale_list:
@@ -1289,7 +1314,8 @@ class RecordingFileWriter:
                     self._data_db[c].append(str(v))
                     self._time_now = int(t)
         return
-
+    
+    @calculate_time(1)
     def write(self, data: Union[bytes, RecordingData, List[bytes], List[RecordingData]], mqtt_thread) -> int:
         # check size
         ths = self.splitting_threshold_size
@@ -1348,42 +1374,54 @@ class RecordingFileWriter:
                 
                 self.get_data_iter(d, mqtt_thread)
 
-            data_save = False
-            mini_save = False
             if len(self._recording_file_dict) > 0:
                 for ch in self._data_db.keys():
                     if self._time_now - self._time_real_time[ch] > 1000000:
                         self._send_data[ch] = True
                         self._time_real_time[ch] = self._time_now
-                    # # if self._time_now - self._time_real_time[ch] > 500000:
-                    # self._data_rl[ch].append(str(self._time_now))
-                    # mes = ' '.join(self._data_rl[ch])
-                    # # print(mes)
-                    # # if mqtt_thread is not None:
-                    # #     mqtt_thread.publish('data_server/device_data_stream/' + str(self._device_id) + '/' + str(ch), mes)
-                    # # mqtt_queue.put([self._device_id, ch, mes])
-                    # mqtt_thread[ch].on_message(mes)
-                    # self._data_rl[ch].clear()
-                    # # self._time_real_time[ch] = self._time_now
+
+            for ch in self._recording_file_dict:
+                if self._recording_file_dict[ch]._id_db == 0:
+                    return None
+            
+            for ch in self._data_db.keys():
+                for scale in self._mini_scale_list:
+                    if  self._recording_mini_dict[str(scale)][ch]._id_db == 0:
+                        return None
+            
+            if self._raw_create_not_done :
+                self._raw_create_not_done = False
+                self._meta.update_subfile_raw(database = self._database)
+            
+            if self._mini_create_not_done :
+                self._mini_create_not_done = False
+                self._meta.update_subfile_mini(database = self._database)
+
+            data_save = False
+            mini_save = False
+            if len(self._recording_file_dict) > 0:
+                for ch in self._data_db.keys():
                     if self._time_now - self._time[ch] > 5000000:
                         if self._recording_file_dict[ch]._status:
                             _data = ' '.join(self._data_db[ch])
                             write_sz = self._recording_file_dict[ch].write(_data, self._channel_list)
-                            sz = sz + write_sz
                             self._raw_save['data'][ch] = _data
                             self._raw_save['id'][ch] = self._recording_file_dict[ch]._id_db
-                            data_save = True
+                            self._raw_save['end_time'][ch] = self._time_now
+                            self._raw_save['size'][ch] = self._recording_file_dict[ch]._size
                             self._data_db[ch].clear()
                             self._time[ch] = self._time_now
-                            self._splitting_size += sz
                             self._meta._last_time = self._time_now
-                            self._recording_file_dict[ch].update_endtime(self._time_now)
+                            self._splitting_size += write_sz
+                            data_save = True
                     if len(self._data_mini_ch[ch]['1000']['mean']) >= 10:
                         mini_save = True
                         for scale in self._mini_scale_list:
+                            str_mean = [str(int) for int in self._data_mini_ch[ch][str(scale)]['mean']]
+                            data_mean = str(self._data_mini_ch[ch][str(scale)]['start_time']) + ' ' + ' '.join(str_mean) + '"***"'
                             self._mini_save[str(scale)]['id'][ch] = self._recording_mini_dict[str(scale)][ch]._id_db
                             self._mini_save[str(scale)]['start_time'][ch] = str(self._data_mini_ch[ch][str(scale)]['start_time'])
-                            self._mini_save[str(scale)]['data_mean'][ch] = self._data_mini_ch[ch][str(scale)]['mean'].copy()
+                            self._mini_save[str(scale)]['data_mean'][ch] = data_mean
                             # self._mini_save[str(scale)]['data_random'][ch] = self._data_mini_ch[ch][str(scale)]['random'].copy()
                             # self._mini_save[str(scale)]['data_bar'][ch] = self._data_mini_ch[ch][str(scale)]['bar'].copy()
                             self._recording_mini_dict[str(scale)][ch].write(self._mini_save[str(scale)]['data_mean'][ch])
@@ -1394,26 +1432,25 @@ class RecordingFileWriter:
 
                 if data_save is True:
                     if self._database is not None:
-                        self._database.put_queue(['data_raw_recording', self._raw_save['id'], self._channel_list, self._raw_save['data']])
-                        self._meta.update_subfile(database = self._database)
+                        recording_input = ['data_raw_recording_new', copy(self._raw_save['id']), copy(self._channel_list), copy(self._raw_save['data']), copy(self._raw_save['end_time']), copy(self._raw_save['size'])]
+                        self._database.put_queue(recording_input)
+                        self._meta.update_subfile_time_size(database = self._database)
                 if mini_save is True:
                     if self._database is not None:
                         for scale in self._mini_scale_list:
-                            self._database.put_queue(['data_mini_recording', self._mini_save[str(scale)]['id'], self._channel_list, self._mini_save[str(scale)]['start_time'], self._mini_save[str(scale)]['data_mean']])
-                        self._meta.update_subfile(database = self._database)
-            
-
+                            self._database.put_queue(['data_mini_recording_new', copy(self._mini_save[str(scale)]['id']), self._channel_list, copy(self._mini_save[str(scale)]['data_mean'])])
+                        self._meta.update_subfile_time_size(database = self._database)
         del data
 
         return None
 
 
     def _switch_recording_file(self):
-        # if self._recording_file is not None:
-        #     self._recording_file.close()
-        
+        self._raw_create_not_done = True
+
         if len(self._recording_file_dict) > 0:
             for ch in self._recording_file_dict.keys():
+                self._id_db_save[ch] = self._recording_file_dict[ch]._id_db
                 self._recording_file_dict[ch].close(self._time_now)
                 self._meta._size += self._recording_file_dict[ch]._size
                 
@@ -1429,16 +1466,16 @@ class RecordingFileWriter:
 
         if self._database is not None:
             self._database.put_queue(['data_raw_create', raw_data_dict, self._channel_list, self._device_id])
-            # self._database.put_queue(['data_raw_create', self._meta, self._recording_file_dict, raw_data_dict, self._channel_list])
 
         self._meta._last_time = self._time_now
-        self._meta.update_subfile(database = self._database)
+        # self._meta.update_subfile(database = self._database)
 
         self._splitting_size = 0
 
         return None
 
     def _switch_recording_mini(self, scale):
+        self._mini_create_not_done = True
         
         if len(self._recording_mini_dict[str(scale)]) > 0:
             for ch in self._recording_mini_dict[str(scale)].keys():
@@ -1456,14 +1493,12 @@ class RecordingFileWriter:
 
         if self._database is not None:
             self._database.put_queue(['data_mini_create', mini_data_dict, self._channel_list, scale, self._device_id])
-            # self._database.put_queue(['data_mini_create', self._meta, self._recording_mini_dict[str(scale)], mini_data_dict, self._channel_list, scale])
             
         self._meta._last_time = self._time_now
-        self._meta.update_subfile(database = self._database)
+        # self._meta.update_subfile(database = self._database)
         return None
 
     def update_meta_id(self, _id):
-        # print('update meta')
         self._meta._id_db = _id
         return None