[update] add data_show function print device data

python/biopro/controller.py

@@ -1586,6 +1586,9 @@ class ControlAPI(metaclass=Router):
     def stop_project(self, project) -> bool:
         raise NotImplementedError()
     
+    def show_device_data(self, device) -> bool:
+        raise NotImplementedError()
+
 # noinspection PyAbstractClass
 class ControlClient(SocketClient, ControlAPI, metaclass=SocketClientMacro(ControlAPI)):
     """Connect to controller server through the socket.

python/biopro/data.py

@@ -131,6 +131,14 @@ class DataAPI(metaclass=abc.ABCMeta):
         """"""
         pass
     
+    @abc.abstractmethod
+    def show_data(self, device: Union[int, Device]):
+        """show device data
+
+        :param device: device ID
+        """
+        pass
+
 
 # noinspection PyAbstractClass
 class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
@@ -192,6 +200,9 @@ class DataClient(SocketClient, DataAPI, metaclass=SocketClientMacro(DataAPI)):
     def stop_sync(self, *device: Union[int, Device]):
         self.send_command('stop_sync', *self._to_device_id(*device))
     
+    def show_data(self, device: int):
+        self.send_command('show_data', device)
+
     @staticmethod
     def _to_device_id(*device: Union[int, Device]) -> Tuple[int, ...]:
         return tuple(map(lambda d: d.device_id if isinstance(d, Device) else d, device))

python/biopro/devlib/data.py

@@ -853,7 +853,7 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
 
     __slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
                  '_total_time_stamp', '_mode', '_cycle_start_time',
-                 '_mode_stop')
+                 '_mode_stop', '_show_data')
 
     def __init__(self):
         super().__init__()
@@ -868,6 +868,8 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         self._mode = 0
         self._cycle_start_time = []
 
+        self._show_data = False
+
     @property
     def name(self) -> str:
         return self.NAME
@@ -885,12 +887,8 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         mem_cnt = data[1]
         time_stamp: float = struct.unpack('<I', data[4:8])[0]  # unit: ms 0x18030000
         current = struct.unpack('<i', data[8:12])[0]  # unit: nA
-        ch2 = struct.unpack('<i', data[12:16])[0]  # unit: uV
+        voltage = struct.unpack('<i', data[12:16])[0]  # unit: uV
         impedance = struct.unpack('<i', data[16:20])[0]  # unit: mOm
-        if self._mode == 16:
-            voltage = impedance - ch2
-        else:
-            voltage = ch2
 
         cycle_number = struct.unpack('<H', data[20:22])[0]
         finish_mode_falg = data[22]
@@ -919,9 +917,10 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
                 print("error timeStamp full data:", list(data), datetime.now(), '\n')
                 return None
             else:
-                # print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
+                if self._show_data:
-                #       '|', current, '|', voltage, '|', impedance,
+                    print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
-                #       '|', cycle_number, '|', finishMode, '@', str(self.device))
+                        '|', current, '|', voltage, '|', impedance,
+                        '|', cycle_number, '|', finishMode, '@', str(self.device))
 
                 # print('|', '{:10}'.format(time_stamp),
                 #       '|', '{:4}'.format(delta),

python/biopro/devlib/device.py

@@ -651,8 +651,6 @@ class DeviceInstruction:
     VIS_DEVICE_DONE = 0x20
     """identify device done"""
 
-    VIS_CC_ZERO = 0x40
-
     VIS_STI = 0xC0
     """stimulation on virtual instruction"""
 
@@ -726,7 +724,6 @@ class DeviceCommonInstruction:
     STOP_STIMULATE = "stop_stimulate"
     VIS_DEVICE_DETECT = 'VIS_DEVICE_DETECT'
     VIS_DEVICE_DONE = 'VIS_DEVICE_DONE'
-    VIS_CC_ZERO = 'VIS_CC_ZERO'
     CIS_VOLT = 'CIS_VOLT'
     CIS_VERSION = 'CIS_VERSION'
 
@@ -750,8 +747,6 @@ class DeviceCommonInstruction:
             return 'VIS_DEVICE_DETECT',
         elif instruction == cls.VIS_DEVICE_DONE:
             return 'VIS_DEVICE_DONE',
-        elif instruction == cls.VIS_CC_ZERO:
-            return 'VIS_CC_ZERO',
         elif instruction == cls.RECORD:
             return 'VIS_STARTR',
         elif instruction == cls.RECORD_ALL:

python/biopro/project/project.py

@@ -211,6 +211,9 @@ class Project(threading.Thread):
     return True
   
   def as_json(self):
+    running_task = None
+    if self._task_manager.running_task is not None:
+      running_task = self._task_manager.running_task.as_json()
     data = {
       'id': self._id,
       'name': self._name,
@@ -219,6 +222,6 @@ class Project(threading.Thread):
       'status': self._status,
       'device': self._device,
       'task': self.task_list,
-      'running_task': self._task_manager.running_task.as_json()
+      'running_task': running_task
     }
     return data

python/biopro/recording/file.py

@@ -1131,14 +1131,17 @@ class RecordingFileWriter:
         self._splitting_size = 0
         return None
 
-    def close(self):
+    def close(self, mqtt_thread):
-        # if self._recording_file is not None:
-        #     self._recording_file.close()
-        #     self._recording_file = None
-        print('close1')
         self._close = True
         if len(self._recording_file_dict) > 0:
             for ch in self._data_db.keys():
+                if len(self._data_rl[ch]) > 0:
+                    self._data_rl[ch].append(str(int(self._time_now)))
+                    mes = ' '.join(self._data_rl[ch])
+                    mqtt_thread[ch].on_message(mes)
+                    self._data_rl[ch].clear()
+                    self._send_data[ch] = False
+
                 if self._recording_file_dict[ch]._status:
                     _data = ' '.join(self._data_db[ch])
                     self._raw_save['data'][ch] = _data

python/biopro/server/data.py

@@ -700,6 +700,9 @@ class DataServer(SocketServer, DataAPI):
 
         return True
     
+    def show_data(self, device):
+        self._configurations[device].put_rec_queue('show_data')
+
 class DataRuntime(metaclass=abc.ABCMeta):
     __slots__ = ('_server', '_device', '_meta_file', '_data_format',
                  '_sync_started', 'sync_file_request', '_writer')

python/biopro/server/main.py

@@ -1340,6 +1340,13 @@ class ControlServer(SocketServer, ControlServerAPI):
             # TODO write options files
             return False
         
+        @logging_info
+        def show_device_data(self, device: int):
+            client = self.data_server.client()
+            if client is not None:
+                with client:
+                    client.show_data(device)
+
 class _RandomCrashThread(ServerThread):
     def __init__(self):
         super().__init__('Crash')

python/biopro/server/recording.py

@@ -185,6 +185,8 @@ class RecordingProcess(Process):
                 self.final_write()
                 self.is_closed = True
                 return False
+            elif q == 'show_data':
+                self._decoder._show_data = not self._decoder._show_data
             else:
                 self.rec_update()
                 self.sync_data(q)
@@ -229,6 +231,24 @@ class RecordingProcess(Process):
                 #     except:
                 #         pass
 
+                if result is not None:
+                    ##
+                    if len(self._mqtt_send_data_ch_level) == 0:
+                        for ch in result.channels():
+                            self._mqtt_send_data_ch_level[ch] = MqttDataMessageHandler(self._mqtt_thread, 'data_server/device_data_stream/' + str(result.device) + '/' + str(ch) ) 
+                    ret.append(result)
+                else:
+                    continue
+
+        # write back
+        # ctime1 = time()
+        if self._writer is not None and len(ret) > 0:
+            if len(self._writer.channel_list) == 0:
+                self._writer.channels_update(ret[0].channels())
+            self._writer.write(ret, self._mqtt_send_data_ch_level)
+        # print('write time: ', time() - ctime1)
+        # print(ret)
+
         try:
             time_duration = self._meta_file.configuration.get_parameter('TIME_DURATION')
             if time_duration and time_duration is not 0 and time() - self._start_time >= time_duration:
@@ -248,25 +268,6 @@ class RecordingProcess(Process):
         except RuntimeError as e:
             print(e)
 
-                if result is not None:
-                    ##
-                    if len(self._mqtt_send_data_ch_level) == 0:
-                        for ch in result.channels():
-                            self._mqtt_send_data_ch_level[ch] = MqttDataMessageHandler(self._mqtt_thread, 'data_server/device_data_stream/' + str(result.device) + '/' + str(ch) ) 
-                    ret.append(result)
-                else:
-                    continue
-
-        # write back
-        # ctime1 = time()
-        if self._writer is not None and len(ret) > 0:
-            if len(self._writer.channel_list) == 0:
-                self._writer.channels_update(ret[0].channels())
-            self._writer.write(ret, self._mqtt_send_data_ch_level)
-        # print('write time: ', time() - ctime1)
-
-        # print(ret)
-
         del ret
         del data
         return 
@@ -607,7 +608,7 @@ class RecordingProcess(Process):
 
     def final_write(self):
         if self._writer is not None:
-            return self._writer.close()
+            return self._writer.close(self._mqtt_send_data_ch_level)
         else:
             return False
     

python/res/devlib/json/Elite_BAT_1.0.devlib.json

@@ -1633,16 +1633,6 @@
     "dpv_engineering_mode_advanced": [
       "dpv_advanced_mode"
     ],
-    "VIS_CC_ZERO": [
-      "_data_format('I4V4Z4T4')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "set_adc_gain_I",
-      "set_adc_gain_Vin",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_EDC_1.4.devlib.json

@@ -492,14 +492,6 @@
         "1XC0;1X02;4B>ve;2B>vf;4B>vg;B>cn"
       ]
     },
-    "VIS_CC_ZERO": [
-      "_data_format('I4V4Z4T4')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "curve_cv3_high_cycle": {
       "type": "RIS",
       "parameter": {

python/res/devlib/json/Elite_EDC_1.5.devlib.json

@@ -1058,7 +1058,7 @@
         "va": "VOLT_ORIGIN",
         "vb": "VOLT_FINAL",
         "vc": "VOLT_STEP",
-        "vd": "STEP_TIME * 0x12",
+        "vd": "STEP_TIME",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",
@@ -1079,7 +1079,7 @@
         "va": "VOLT_ORIGIN",
         "vb": "VOLT_FINAL",
         "vc": "VOLT_STEP",
-        "vd": "STEP_TIME * 0x12",
+        "vd": "STEP_TIME",
         "ve": "CYCLE_NUMBER",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
@@ -1633,16 +1633,6 @@
     "dpv_engineering_mode_advanced": [
       "dpv_advanced_mode"
     ],
-    "VIS_CC_ZERO": [
-      "_data_format('I4V4Z4T4')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "set_adc_gain_I",
-      "set_adc_gain_Vin",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_EDC_1.5r2.devlib.json

@@ -1058,7 +1058,7 @@
         "va": "VOLT_ORIGIN",
         "vb": "VOLT_FINAL",
         "vc": "VOLT_STEP",
-        "vd": "STEP_TIME * 0x12",
+        "vd": "STEP_TIME",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",
@@ -1079,7 +1079,7 @@
         "va": "VOLT_ORIGIN",
         "vb": "VOLT_FINAL",
         "vc": "VOLT_STEP",
-        "vd": "STEP_TIME * 0x12",
+        "vd": "STEP_TIME",
         "ve": "CYCLE_NUMBER",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
@@ -1633,16 +1633,6 @@
     "dpv_engineering_mode_advanced": [
       "dpv_advanced_mode"
     ],
-    "VIS_CC_ZERO": [
-      "_data_format('I4V4Z4T4')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "set_adc_gain_I",
-      "set_adc_gain_Vin",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_EDC_1.5re.devlib.json

@@ -1058,7 +1058,7 @@
         "va": "VOLT_ORIGIN",
         "vb": "VOLT_FINAL",
         "vc": "VOLT_STEP",
-        "vd": "STEP_TIME * 0x12",
+        "vd": "STEP_TIME",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",
@@ -1079,7 +1079,7 @@
         "va": "VOLT_ORIGIN",
         "vb": "VOLT_FINAL",
         "vc": "VOLT_STEP",
-        "vd": "STEP_TIME * 0x12",
+        "vd": "STEP_TIME",
         "ve": "CYCLE_NUMBER",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
@@ -1203,7 +1203,7 @@
         "pe": "SAMPLE_RATE"
       },
       "data": [
-        "X07;",
+        "X0C;",
         "B>va;4B>vb;2B>vc;2B>vd;",
         "4b>pa;4b>pb;",
         "4b>pc;4b>pd;",
@@ -1633,16 +1633,6 @@
     "dpv_engineering_mode_advanced": [
       "dpv_advanced_mode"
     ],
-    "VIS_CC_ZERO": [
-      "_data_format('I4V4Z4T4')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "set_adc_gain_I",
-      "set_adc_gain_Vin",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_EIS_1.0.devlib.json

@@ -424,14 +424,6 @@
         "1XD2;1X02;4B>ve;2B>vf;2B>cn"
       ]
     },
-    "VIS_CC_ZERO": [
-      "_data_format('EISZeroOne')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_EIS_1.1.devlib.json

@@ -424,14 +424,6 @@
         "1XD2;1X02;4B>ve;2B>vf;2B>cn"
       ]
     },
-    "VIS_CC_ZERO": [
-      "_data_format('EISZeroOne')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_EIS_MINI_1.0.devlib.json

@@ -424,14 +424,6 @@
         "1XD2;1X02;4B>ve;2B>vf;2B>cn"
       ]
     },
-    "VIS_CC_ZERO": [
-      "_data_format('EISZeroOne')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "ble_instru_send": [
       "ble_write",
       "_cdr('20X>ADC_VALUE_I')"

python/res/devlib/json/Elite_MEGAFLY_0.1.devlib.json

@@ -1426,14 +1426,6 @@
         "X80;X03;B>CTRL_HIGH_Z_15"
       ]
     },
-    "VIS_CC_ZERO": [
-      "_data_format('I4V4Z4T4')",
-      "_disable_cache(False)",
-      "_notify(True)",
-      "VIS_CC_ZERO",
-      "_sync(True)",
-      "VIS_STI"
-    ],
     "pulse_fly": [
       "sti_mode",
       "gas1_mode",