Merge remote-tracking branch 'origin/release/update_eis_cali_fomula' into dev/scheduler_folder

- init project then create folder

python/biopro/db/collection.py

@@ -0,0 +1,60 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+from biopro.db.base import Session
+
+from .base import Base
+
+class Collection(Base):
+    __tablename__ = "collections"
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String(255))
+    parent = Column(JSONB)
+    controller_id = Column(Integer)
+    type = Column(String(255))
+    description = Column(String(255))
+    deleted = Column(Boolean)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    @classmethod
+    def create_collection(cls, collection_name, parent):
+        with Session() as session:
+            name = cls.check_name_duplicate(collection_name, parent, 0)
+            collection = Collection(
+                name = name,
+                parent = parent,
+                type= "folder",
+            )
+            session.add(collection)
+            session.commit()
+            print('a', collection.id)
+            return collection
+
+    @classmethod
+    def check_name_duplicate(cls, collection_name, parent, n):
+        with Session() as session:
+            result = session.query(Collection).filter(Collection.name == cls.generate_name(collection_name, n), Collection.parent == parent).first()
+            if result is None:
+                return cls.generate_name(collection_name, n)
+            else:
+                new_num = n + 1
+                # new_name =  f"{collection_name}({new_num})" 
+                return cls.check_name_duplicate(collection_name, parent, new_num)
+
+    @classmethod
+    def generate_name(cls, collection_name, n):
+        if n==0:
+            return collection_name
+        else:
+            return f"{collection_name}({n})" 
+    
+    @classmethod
+    def find_collection(cls, collection_name, parent):
+        with Session() as session:
+            result = session.query(Collection).filter(Collection.name == collection_name, Collection.parent == parent).first()
+            return result
+    
+        

python/biopro/db/project.py

@@ -0,0 +1,24 @@
+from sqlalchemy import Table, Column, String, MetaData, ForeignKey, JSON
+from sqlalchemy.sql import select, func
+from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
+from sqlalchemy.dialects.postgresql import JSONB
+
+from .base import Base
+
+class Project(Base):
+    __tablename__ = "project"
+
+    id = Column(Integer, primary_key=True)
+    name = Column(String)
+    desc = Column(String)
+    task = Column(JSONB)
+    cycle = Column(JSONB)
+    device = Column(JSONB)
+    uuid = Column(String(36))
+    user_auth = Column(JSONB)
+    deleted = Column(Boolean, default = False)
+    created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
+    updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
+
+    # def __repr__(self):
+    #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/db/project_meta.py

@@ -3,7 +3,7 @@ from sqlalchemy.sql import select, func
 from sqlalchemy.types import Integer, BigInteger, String, Boolean, TIMESTAMP, Numeric
 from sqlalchemy.dialects.postgresql import JSONB
 
-from .base import Base
+from .base import Base, Session
 
 class MetaProjectInfo(Base):
     __tablename__ = "project_metas"
@@ -17,5 +17,13 @@ class MetaProjectInfo(Base):
     created_at = Column(TIMESTAMP(timezone=True), server_default=func.now())
     updated_at = Column(TIMESTAMP(timezone=True), onupdate=func.now())
 
+    @classmethod
+    def create_project_meta(cls, project):
+        with Session() as session:
+            project_meta = MetaProjectInfo(project = project['project'], cycle= project['cycle'], task=project['task'], serial_number=int(project['serial_number']))
+            session.add(project_meta)
+            session.commit()
+            return project_meta.id
+
     # def __repr__(self):
     #     return f"User(id={self.id!r}, name={self.name!r}, fullname={self.task!r})"

python/biopro/device/device_cc2650.py

@@ -660,7 +660,7 @@ class CC2650Device(Device):
                             break
 
         elif device_type == 'EISZeroOne':
-            i = 0
+            i = 1
             request_times = 0
             while i < 13:
                 try:
@@ -2177,23 +2177,12 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         else:
             for dev in self._found:
                 if dev.mac_address == address:
-
-                    # send device mac and addrType
-                    try:
-                        # print('send_connect',bytes(connect_ins))
-                        self._cc2650.send("bytes", bytes(connect_ins))
-
-                    except SerialTimeoutException as e:
-                        raise RecvTimeout('device CC2650 connect fail') from e
-
-                    else:
-                        sleep(2)
-
                     # connection establish done?
                     for retry_recv_ack in range(5):
-                        self._cc2650.send("bytes", bytes((0, 0, 0, 0)))
-
                         try:
+                            # send device mac and addrType
+                            self._cc2650.send("bytes", bytes(connect_ins))
+                            sleep(1.5)
                             con_done = self._cc2650.recv_uart(timeout = 0.1)
 
                         except RecvTimeout:
@@ -2202,6 +2191,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
                         # is the ack valid?
                         if con_done is None:
+                            self.log_info("recv connection timeout, retry... ")
                             continue
 
                         elif con_done[0] is 46 and \

python/biopro/devlib/data.py

@@ -884,20 +884,54 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
     def decode(self, data: bytes) -> Optional[RecordingData]:
         if len(data) < 18:
             return None
-        voltage = 0
-        mem_cnt = data[1]
-        time_stamp: float = struct.unpack('<I', data[4:8])[0]  # unit: ms 0x18030000
-        current = struct.unpack('<i', data[8:12])[0]  # unit: nA
-        voltage = struct.unpack('<i', data[12:16])[0]  # unit: uV
-        impedance = struct.unpack('<i', data[16:20])[0]  # unit: mOm
+        
+        #/* Elite Notify data:
+        # * +--------+----------+---------+---------+---------+-----------+-----------------+
+        # * | id(1B) | time(4B) | ch1(4B) | ch2(4B) | ch3(4B) | cycle(2B) | finish_flag(1B) |
+        # * | bat(4B) | notify#(1B) | ch4(4B) | ch5(4B) | ch6(4B) | __(3B) |
+        # * +---------+-------------+---------+---------+---------+--------+
+        # */
+        #/*
+        # * EliteADCControl(): use ADC plot, and send what data to controller
+        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
+        # * |           MODE            |    ch1    |    ch2    |    ch3    |   cycle   |    ch4    |
+        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
+        # * | CURVE_IV                  |    Iin    |    Vout   |    Vin    |           |    Vmon   |
+        # * | CURVE_IV_CY               |    Iin    |    Vout   |    Vin    |     v     |    Vmon   |
+        # * | CURVE_VO                  |    Iin    |    Vout   |    Vin    |           |    Vmon   |
+        # * | CURVE_RT                  |    Iin    |    Vout   |     R     |           |    Vmon   |
+        # * | CURVE_VT                  |    Iin    |    Vin    |           |           |           |
+        # * | CURVE_IT                  |    Iin    |    Vin    |    Vout   |           |    Vmon   |
+        # * | CURVE_CC                  |    Iin    |    Vin    |    Vout   |           |    Vmon   |
+        # * | CURVE_CP                  |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_CV                  |    Iin    | Vout-Vin  |    Vout   |     v     |    Vmon   |
+        # * | CURVE_LSV                 |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_CA                  |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_OCP                 |    Iin    | Vmon-Vin  |    Vin    |           |    Vmon   |
+        # * | CURVE_UNI_PULSE           |  pul1_Iin | pul2_Iin  |           |           |           |
+        # * | CURVE_DPV                 | c1&c2_avg | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_DPV_SMPRATE         |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_DPV_ADVANCE         | c1&c2_avg | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_DPV_ADVANCE_SMPRATE |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
+        # * 
+        # * ps. c1_avg = pul1_Iin
+        # * ps. c2_avg = pul2_Iin
+        # */
 
-        cycle_number = struct.unpack('<H', data[20:22])[0]
-        finish_mode_falg = data[22]
-        battery = struct.unpack('<i', data[23:27])[0]
-        elite_notify_times = data[27]
-        notify_one = struct.unpack('<i', data[28:32])[0]
-        notify_two = struct.unpack('<i', data[32:36])[0]
-        notify_three = struct.unpack('<i', data[36:40])[0]
+        mem_cnt = data[1]
+        time_stamp: float = struct.unpack('<I', data[1+3:5+3])[0]
+        ch1 = struct.unpack('<i', data[5+3:9+3])[0]  # unit: nA
+        ch2 = struct.unpack('<i', data[9+3:13+3])[0]  # unit: uV
+        ch3 = struct.unpack('<i', data[13+3:17+3])[0]  # unit: mOm
+
+        cycle_number = struct.unpack('<H', data[17+3:19+3])[0]
+        finish_mode_falg = data[19+3]
+        battery = struct.unpack('<i', data[20+3:24+3])[0]
+        elite_notify_times = data[24+3]
+        ch4 = struct.unpack('<i', data[25+3:29+3])[0]
+        ch5 = struct.unpack('<i', data[29+3:33+3])[0]
+        ch6 = struct.unpack('<i', data[33+3:37+3])[0]
         # self._show_data = True
 
         mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
@@ -924,25 +958,29 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
             else:
                 if self._show_data:
                     print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
-                        '|', current, '|', voltage, '|', impedance, '|', cycle_number, 
-                        '|', notify_one, '|', notify_two, '|', notify_three, 
-                        '|', finishMode, '@', str(self.device))
+                        '|', ch1, '|', ch2, '|', ch3, '|', cycle_number, 
+                        '|', ch4, '|', ch5, '|', ch6, 
+                        '|', finishMode, '@', str(self.device), flush = True)
 
-                # print('|', '{:10}'.format(time_stamp),
-                #       '|', '{:4}'.format(delta),
-                #       '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
-                #       '|', '{:10}'.format(current),
-                #       '|', '{:10}'.format(voltage),
-                #       '|', '{:10}'.format(impedance),
-                #       '|', '{:5}'.format(cycle_number),
-                #       '|', '{:1}'.format(finishMode),
-                #       '@', str(self.device), '|')
+                    # print('|', '{:10}'.format(time_stamp),
+                    #     '|', '{:4}'.format(delta),
+                    #     '|', '{:10}'.format(int(time_stamp * 1000 / 2)),    #[usec]
+                    #     '|', '{:10}'.format(ch1),                           #[nA]
+                    #     '|', '{:10}'.format(ch2),                           #[uV]
+                    #     '|', '{:10}'.format(ch3),                     
+                    #     '|', '{:5}'.format(cycle_number),
+                    #     '|', '{:10}'.format(ch4),                           #Voutin[uV]
+                    #     '|', '{:10}'.format(ch5),
+                    #     '|', '{:10}'.format(ch6),
+                    #     '|', '{:5}'.format(battery),                        #[mV]
+                    #     '|', '{:4}'.format(elite_notify_times),
+                    #     '|', '{:1}'.format(finishMode),
+                    #     '@', str(self.device), '|', flush = True)
 
-                # print('|', '{:5}'.format(mem_wrong_information),
-                #       '|', '{:2}'.format(ram_num),
-                #       '|', '{:2}'.format(broken_flag),
-                #       '@', str(self.device), '|')
-                pass
+                    # print('|', '{:5}'.format(mem_wrong_information),
+                    #       '|', '{:2}'.format(ram_num),
+                    #       '|', '{:2}'.format(broken_flag),
+                    #       '@', str(self.device), '|')
 
         if finishMode == True:
             print("finishMode full data:", list(data), datetime.now())
@@ -951,13 +989,13 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        ret.append_data(0, current)
-        ret.append_data(1, voltage)
-        ret.append_data(2, impedance)
+        ret.append_data(0, ch1)
+        ret.append_data(1, ch2)
+        ret.append_data(2, ch3)
         ret.append_data(3, cycle_number)
-        ret.append_data(4, notify_one)
-        ret.append_data(5, notify_two)
-        ret.append_data(6, notify_three)
+        ret.append_data(4, ch4)
+        ret.append_data(5, ch5)
+        ret.append_data(6, ch6)
         # ret.append_data(4, battery)
         # ret.append_data(5, elite_notify_times)
         # ret.append_data(6, mem_cnt)
@@ -1376,16 +1414,13 @@ class EISZeroOneDataDecoder(RecDataDecoder):
     @staticmethod
     def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
         if cali_coeff != b'':
+            cis_data_len = 20
             cali_table = []
             hsrtia_a = []
             hsrtia_b = []
-            hsrtia_c = []
-            hsrtia_d = []
+            rolloff = []
             phase_coeff = []
             phase_offset = []
-            
-            # phase_coeff = [[0]*4 for i in range(4)]
-            # phase_offset = [[0]*4 for i in range(4)]
 
             phase_coeff = numpy.zeros([4, 4], dtype = int)
             phase_offset = numpy.zeros([4, 4], dtype = int)  
@@ -1399,104 +1434,107 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             # ]
             #######################################
 
-            # print('cali_coeff', cali_coeff)
-            cutoff_freq = struct.unpack('>I', cali_coeff[1:5])[0] * 100     #4
-            # temp = struct.unpack('>B', cali_coeff[5:6])[0]                 #1
-            # hsrtia_200r = struct.unpack('>B', cali_coeff[6:7])[0]           #1
-            # hsrtia_5k = struct.unpack('>H', cali_coeff[7:9])[0]             #2
-            # hsrtia_20k = struct.unpack('>H', cali_coeff[6:8])[0]           #2
-            # hsrtia_160k = struct.unpack('>I', cali_coeff[8:12])[0]         #4
+            #Lv[0] 160k
+            cis_cali_packet = 1
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0])
+            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+5:index+13])[0])
+            rolloff.append(struct.unpack('>i', cali_coeff[index+13:index+17])[0])
 
-            index = 20
+            cis_cali_packet = 2
+            index = (cis_cali_packet - 1) * cis_data_len
             g = 0
             phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
             phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
             phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
             phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
             
-            index = 40
+            cis_cali_packet = 3
+            index = (cis_cali_packet - 1) * cis_data_len
             g = 0
             phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
             phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
             phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
             phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
             
-            #Lv[0] 160k
-            index = 60
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
-
             #Lv[1] 20k
-            index = 80
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
+            cis_cali_packet = 4
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0])
+            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+5:index+13])[0])
+            rolloff.append(struct.unpack('>i', cali_coeff[index+13:index+17])[0])
+
+            cis_cali_packet = 5
+            index = (cis_cali_packet - 1) * cis_data_len
+            g = 1
+            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            cis_cali_packet = 6
+            index = (cis_cali_packet - 1) * cis_data_len
+            g = 1
+            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
             #Lv[2] 5k
-            index = 100
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
+            cis_cali_packet = 7
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0])
+            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+5:index+13])[0])
+            rolloff.append(struct.unpack('>i', cali_coeff[index+13:index+17])[0])
+
+            cis_cali_packet = 8
+            index = (cis_cali_packet - 1) * cis_data_len
+            g = 2
+            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            
+            cis_cali_packet = 9
+            index = (cis_cali_packet - 1) * cis_data_len
+            g = 2
+            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
             #Lv[3] 200R
-            index = 120
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
+            cis_cali_packet = 10
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0])
+            hsrtia_b.append(struct.unpack('>q', cali_coeff[index+5:index+13])[0])
+            rolloff.append(struct.unpack('>i', cali_coeff[index+13:index+17])[0])
 
-            index = 140
-            g = 1
-            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 160
-            g = 1
-            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 180
-            g = 2
-            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 200
-            g = 2
-            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 220
+            cis_cali_packet = 11
+            index = (cis_cali_packet - 1) * cis_data_len
             g = 3
             phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
             phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
             phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
             phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
             
-            index = 240
+            cis_cali_packet = 12
+            index = (cis_cali_packet - 1) * cis_data_len
             g = 3
             phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
             phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
             phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
             phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
-            print('cutoff_freq', cutoff_freq)
             print('hsrtia_a', hsrtia_a)
             print('hsrtia_b', hsrtia_b)
-            print('hsrtia_c', hsrtia_c)
+            print('rolloff', rolloff)
             print('phase_coeff')
             print(phase_coeff)
             print('phase_offset')
             print(phase_offset)
 
-            cali_table.append((cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
+            cali_table.append((phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff))
 
             return cali_table
         else:
@@ -1553,9 +1591,8 @@ class EISZeroOneDataDecoder(RecDataDecoder):
                 if self.cali_coeff is not None and (self._mode == 0 or self._mode == 5):
                     hsrtia_a = []
                     hsrtia_b = []
-                    hsrtia_c = []
-                    hsrtia_d = []
-                    cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
+                    rolloff = []
+                    phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff = self.cali_coeff[0]
 
                 if (self._mode == 0 or self._mode == 5):
                     img = ch1
@@ -1563,19 +1600,11 @@ class EISZeroOneDataDecoder(RecDataDecoder):
                     freq = ch3
                     fre_idx = 0
                     voltage_amp = round(ch4 / 1000) # Amp[mV]
+                    rolloff_cali = rolloff[gain]
 
-                    # rolloff_cali = cutoff_freq/1e5
-                    rolloff_cali = hsrtia_c[gain]
                     voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 /  rolloff_cali ** 2 / 1e4)
-
-                    # if (gain == 3):
-                    #     current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
-                    # else:
+                    current = (voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain]) / 1e8 #[nA]
                     
-                    current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain]
-                    # current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
-                    
-
                     if (current != 0):
                         # impedance[mOhm] = voltage_amp[mv] * 1000000 / 1.414213 / current[nA]       #RMS=amp*SQRT(2), SQRT(2)=1.414213
                         impedance = voltage_amp * 707106.78 / current
@@ -1597,20 +1626,8 @@ class EISZeroOneDataDecoder(RecDataDecoder):
                     phase = raw_phase - ideal_raw_phase
                     phase = phase % 180 if phase % 180<=90 else phase % 180-180
 
-                    # last_phase_to90 = self._last_phase % 180 if self._last_phase % 180<=90 else self._last_phase % 180-180
-                    # diff = phase - last_phase_to90
-
-                    # if (self._first_phase_flag):
-                    #     # self._last_phase = phase
-                    #     self._first_phase_flag = 0
-                    # elif (abs(diff) >= 90):
-                    #     phase = self._last_phase + diff + (180 if diff<0 else-180)
-                    # else:
-                    #     phase = self._last_phase + diff
-                    # self._last_phase = phase
-
-                    imag_after_cal = impedance * math.sin(phase * math.pi / 180)
-                    real_after_cal = impedance * math.cos(phase * math.pi / 180)
+                    imag_after_cal = round(impedance * math.sin(phase * math.pi / 180))
+                    real_after_cal = round(impedance * math.cos(phase * math.pi / 180))
 
                 if self._show_data:
                     if (self._mode == 0 or self._mode == 5):
@@ -1656,13 +1673,13 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        if self._mode == 0 or self._mode == 5:                           #EIS Mode
+        if self._mode == 0 or self._mode == 5:
             ret.append_data(0, ch1)                     #raw_img
             ret.append_data(1, ch2)                     #raw_real
             ret.append_data(2, ch3 * 10)                #Frequency [mHz]
             ret.append_data(3, cycle_number)            #cycle
-            ret.append_data(4, round(imag_after_cal))   #Z_imag [Ohm]
-            ret.append_data(5, round(real_after_cal))   #Z_real [Ohm]
+            ret.append_data(4, imag_after_cal)          #Z_imag [Ohm]
+            ret.append_data(5, real_after_cal)          #Z_real [Ohm]
             ret.append_data(6, round(impedance))        #Impedance [Ohm]
             ret.append_data(7, round(phase*1000))       #Phase [millidegree]
             ret.append_data(8, round(current))          #Current [nA]
@@ -1674,8 +1691,6 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             ret.append_data(12, notify_three)
             ret.append_data(13, voltage_amp)            #amp[mV]
 
-
-
         else:                                           #CV Mode
             ret.append_data(0, ch1)                     #Iin     [nA]
             ret.append_data(1, ch2)                     #Vset    [nV]

python/biopro/project/project.py

@@ -15,6 +15,9 @@ from .instruction import Instruction
 from biopro.device.manager import DeviceManager
 from biopro.text import *
 
+from biopro.db.base import Session
+from biopro.db.collection import Collection
+
 key_list = {
   'deviceList': 'device',
 }
@@ -60,6 +63,14 @@ class Project(threading.Thread):
     fh = logging.FileHandler(f'/home/pi/logger/project/{self.uuid}.log', mode="w")
     fh.setFormatter(self._formatter)
     self._logger.addHandler(fh)
+
+    default_name = 'admin'
+    default_parent = {"folder": [1]}
+    collection = Collection.find_collection(default_name, default_parent)
+    parent = {"folder": [collection.id]}
+    # create project folder
+    collection = Collection.create_collection(self.name, parent)
+    self.setup_collection(collection)
     
   def setup_project(self, project):
     for (key, value) in project.items():
@@ -79,6 +90,9 @@ class Project(threading.Thread):
       complete_device = self._device_manager.get_device(mac_address)
       complete_device.occupied_by_project = self._uuid
       self._complete_device[device] = complete_device
+    
+  def setup_collection(self, collection):
+    self._task_manager.create_collection(collection)
 
   @property
   def id(self) -> int:

python/biopro/project/task_manager.py

@@ -5,6 +5,7 @@ from xml.dom.expatbuilder import parseString
 import paho.mqtt.client as mqtt
 from biopro.text import *
 from .task import Task
+from biopro.db.collection import Collection
 
 _RUNTIME_COMPILE = False
 
@@ -67,6 +68,13 @@ class TaskManager():
         if cycle['range'][1] == task.uuid:
           return index
 
+    def check_task_in_cycle(self, task_index):
+      for index, cycle in enumerate(self._cycle_list):
+        if self.get_index_by_uuid(cycle['range'][0]) <= task_index:
+          if self.get_index_by_uuid(cycle['range'][1]) >= task_index:
+            return True
+      return False
+
     @property
     def check_list(self):
       return [self._running_task, *self._next_task]
@@ -162,4 +170,12 @@ class TaskManager():
 
     def get_task(self, task_id):
       return self._task_list[task_id]
-  
+  
+    def create_collection(self, parent):
+      for index, task in enumerate(self._task_list):
+        if self.check_task_in_cycle(index) == True:
+          if task.type == '':
+            collection = Collection.create_collection(task.name, {"folder": [parent.id]})
+            task.parent = {"folder": [collection.id]}
+        else:
+          task.parent = {"folder": [parent.id]}

python/biopro/server/data.py

@@ -362,14 +362,14 @@ class DataServer(SocketServer, DataAPI):
         self.log_verbose('device ID', device_id)
 
         # project binding meta file
-        project_id = None
-        _project = None
-        if project_info != None:
-            _project = json.loads(project_info)
-            self.database_process.put_queue(['project_insert', device_id, _project])
-            result = self._queue_ds_dict[int(device_id)].get()
-            if result[0] == 'project_id':
-                project_id =  result[1]
+        # project_id = None
+        # _project = None
+        # if project_info != None:
+        #     _project = json.loads(project_info)
+        #     self.database_process.put_queue(['project_insert', device_id, _project])
+        #     result = self._queue_ds_dict[int(device_id)].get()
+        #     if result[0] == 'project_id':
+        project_id =  project_info
 
         # while len(self._configurations) <= device_id:
         #     self._configurationsappend(None)

python/biopro/server/database.py

@@ -222,7 +222,8 @@ class DataBaseProcess(Process):
 
                 try:
                     sql_cursor.execute(sql_str, sql_set)
-                except:
+                except BaseException as e:
+                    print('meta create error', e)
                     self._psql_conn.commit()
                     sql_cursor.close()
                     self._queue_error.put(device_id)
@@ -249,7 +250,8 @@ class DataBaseProcess(Process):
 
                 try:
                     sql_cursor.execute(sql_str, sql_set)
-                except:
+                except BaseException as e:
+                    print('meta update error', e)
                     self._psql_conn.commit()
                     sql_cursor.close()
                     self._queue_error.put(device_id)

python/biopro/server/main.py

@@ -1102,6 +1102,7 @@ class ControlServer(SocketServer, ControlServerAPI):
 
         client = self.data_server.client()
         project = None
+        project_meta_id = None
         if client is not None:
             info = self.file_manager.use(device)
 
@@ -1114,10 +1115,11 @@ class ControlServer(SocketServer, ControlServerAPI):
                 info = self.file_manager.save(device, filename)
             
             if device.occupied_by_project != None:
-                project = json.dumps(self.project_manager.get(device.occupied_by_project).info_pass_data_server())
-
+                project = self.project_manager.get(device.occupied_by_project).info_pass_data_server()
+                project_meta_id = MetaProjectInfo.create_project_meta(project)      
+                
             with client:
-                client.update_device_configuration(device, info.meta_file, value, project)
+                client.update_device_configuration(device, info.meta_file, value, project_meta_id)
 
     def _device_set_disable_cache(self, device: CompletedDevice, disable):
         if disable:

python/res/devlib/json/Elite_BAT_1.0.devlib.json

@@ -6,7 +6,7 @@
     "major_product_number": 0,
     "minor_product_number": 3,
     "major_version_number": 1,
-    "minor_version_number": 0
+    "minor_version_number": 1
   },
   "constant": {
     "TIME_MAX": 100000,
@@ -780,7 +780,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -1301,7 +1301,7 @@
     "curve_const_vscan": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EDC_1.5.devlib.json

@@ -33,6 +33,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -617,7 +618,8 @@
         "Open Circuit Potential",
         "Pulse Sensing",
         "Differential Pulse Voltammetry (DPV)",
-        "Chronopotentiometry"
+        "Chronopotentiometry",
+        "Idle"
       ]
     },
     "VOLT_ORIGIN": {
@@ -818,7 +820,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -949,6 +951,7 @@
           "10": "cali_dac_test",
           "11": "cali_adc_test",
           "12": "",
+          "17": "idle",
           "*": "start_data"
         }
       }
@@ -976,6 +979,9 @@
       "VIS_STI",
       "_cdr('1X;4X>ADC_VALUE_I')"
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format",
       "_notify(True)",
@@ -1023,7 +1029,7 @@
           "6": "const_current",
           "7": "curve_cv3",
           "8": "curve_lsv",
-          "9": "curve_const_vscan",
+          "9": "curve_ca",
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
@@ -1360,10 +1366,10 @@
         "2B>pe"
       ]
     },
-    "curve_const_vscan": {
+    "curve_ca": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EDC_1.5r2.devlib.json

@@ -1,12 +1,12 @@
 {
-  "name": "Elite_EDC_1.5r2",
+  "name": "Elite_EDC_1.5re",
   "version": "1.2.30",
   "match_rule": {
     "local_name_pattern": "Elite.*",
     "major_product_number": 0,
     "minor_product_number": 2,
     "major_version_number": 1,
-    "minor_version_number": 8
+    "minor_version_number": 7
   },
   "constant": {
     "TIME_MAX": 100000,
@@ -33,6 +33,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -617,7 +618,8 @@
         "Open Circuit Potential",
         "Pulse Sensing",
         "Differential Pulse Voltammetry (DPV)",
-        "Chronopotentiometry"
+        "Chronopotentiometry",
+        "Idle"
       ]
     },
     "VOLT_ORIGIN": {
@@ -818,7 +820,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -949,6 +951,7 @@
           "10": "cali_dac_test",
           "11": "cali_adc_test",
           "12": "",
+          "17": "idle",
           "*": "start_data"
         }
       }
@@ -976,6 +979,9 @@
       "VIS_STI",
       "_cdr('1X;4X>ADC_VALUE_I')"
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format",
       "_notify(True)",
@@ -1023,7 +1029,7 @@
           "6": "const_current",
           "7": "curve_cv3",
           "8": "curve_lsv",
-          "9": "curve_const_vscan",
+          "9": "curve_ca",
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
@@ -1360,10 +1366,10 @@
         "2B>pe"
       ]
     },
-    "curve_const_vscan": {
+    "curve_ca": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EDC_1.5re.devlib.json

@@ -820,7 +820,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -1029,7 +1029,7 @@
           "6": "const_current",
           "7": "curve_cv3",
           "8": "curve_lsv",
-          "9": "curve_const_vscan",
+          "9": "curve_ca",
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
@@ -1366,10 +1366,10 @@
         "2B>pe"
       ]
     },
-    "curve_const_vscan": {
+    "curve_ca": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EIS_1.0.devlib.json

@@ -34,6 +34,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -98,7 +99,8 @@
         "V-T Graph",
         "R-T Graph",
         "EIS constant frequency",
-        "Dev Mode"
+        "Dev Mode",
+        "Idle"
       ]
     },
     "GENERAL_HS_RTIA": {
@@ -141,7 +143,7 @@
     "EIS_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -213,7 +215,7 @@
     "CF_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -370,10 +372,14 @@
       {
         "expression": "MODE",
         "when": {
+          "7": "idle",
           "*": "start_data"
         }
       }
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format_cali",
       "_notify(True)",

python/res/devlib/json/Elite_EIS_1.1.devlib.json

@@ -143,7 +143,7 @@
     "EIS_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -215,7 +215,7 @@
     "CF_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]

python/res/devlib/json/Elite_EIS_MINI_1.0.devlib.json

@@ -143,7 +143,7 @@
     "EIS_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -215,7 +215,7 @@
     "CF_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]

python/res/devlib/json/Elite_TRIG_0.1.devlib.json

@@ -2,16 +2,27 @@
   "name": "Elite_TRIG_0.1",
   "version": "1.2.30",
   "match_rule": {
-    "local_name_pattern": "Trigger.*",
+    "local_name_pattern": "Elite.*",
     "major_product_number": 0,
     "minor_product_number": 5,
     "major_version_number": 1,
     "minor_version_number": 0
   },
   "constant": {
-
+    "TIME_MAX": 100000
   },
   "parameters": {
+    "TIME_DURATION": {
+      "description": "timer",
+      "record_meta": true,
+      "initial": 0,
+      "domain": [
+        "TIME_MAX"
+      ],
+      "value": {
+        "expression": "VALUE"
+      }
+    },
     "ACC_a_out0": {
       "description": "Switch of analog current channel 1",
       "record_meta": true,
@@ -142,7 +153,8 @@
       "description": "working mode",
       "record_meta": true,
       "value": [
-        "Analog Current Control (ACC)"
+        "Analog Current Control (ACC)",
+        "Idle"
       ]
     },