modify equations

python/biopro/device/device_cc2650.py

@@ -1950,22 +1950,18 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
     @synchronized
     def reset_software(self):
         """software reset cc2650 (master)"""
-        # print('resettt---------14')
-        # print()
-        # self.log_verbose('reset (software)')
 
-        # try:
-        #     #self._cc2650.send("3B", 1, 0, 0)
-        #     pass
+        self.log_verbose('reset (software)')
 
-        # except SerialTimeoutException as e:
-        #     raise RecvTimeout('device CC2650 reset fail') from e
+        try:
+            #self._cc2650.send("3B", 1, 0, 0)
+            pass
 
-        # finally:
-        #     sleep(0.1)
-        print("pass")
-        print()
-        
+        except SerialTimeoutException as e:
+            raise RecvTimeout('device CC2650 reset fail') from e
+
+        finally:
+            sleep(0.1)
 
     @synchronized
     def init_hardware(self, timeout=1):
@@ -1979,7 +1975,6 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         # send scan command
         try:
             print(':: scan_send_ins ::', self.CC2650_COMMAND_LEN, 3, 0, 0)
-            print()
             self._cc2650.send(self.CC2650_COMMAND_LEN, 3, 0, 0)
 
         except SerialTimeoutException as e:
@@ -2015,7 +2010,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         scan_ins.append(1) #length
         scan_ins.append(0xF1)
 
-        print('send_scan', list(scan_ins))
+        # print('send_scan', bytes(scan_ins))
         self._cc2650.send("bytes", bytes(scan_ins))
 
         # for wait_scan_response in range(5):
@@ -2175,7 +2170,6 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
             # send device mac and addrType
             try:
-                print('send_connect..',list(connect_ins))
                 self._cc2650.send("bytes", bytes(connect_ins))
 
             except SerialTimeoutException as e:
@@ -2208,26 +2202,39 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
                     # send device mac and addrType
                     try:
-                        print('send_connect',list(connect_ins))
+                        # print('send_connect',bytes(connect_ins))
                         self._cc2650.send("bytes", bytes(connect_ins))
 
                     except SerialTimeoutException as e:
                         raise RecvTimeout('device CC2650 connect fail') from e
 
                     else:
-                        sleep(1)
+                        sleep(2)
+
+                    # connection establish done?
+                    for retry_recv_ack in range(5):
+                        self._cc2650.send("bytes", bytes((0, 0, 0, 0)))
+
                         try:
                             con_done = self._cc2650.recv_uart(timeout = 0.1)
 
                         except RecvTimeout:
-                            self.log_info("recv connection timeout, fail... ")
+                            self.log_info("recv connection timeout, retry... ")
+                            continue
 
-                        if con_done[0] is 46 and \
+                        # is the ack valid?
+                        if con_done is None:
+                            continue
+
+                        elif con_done[0] is 46 and \
                                 con_done[1] is 80 and \
                                 con_done[2] is 48 and \
                                 con_done[3] is 4:
                             connected = True
-                        print('con_done=', con_done)
+                            # print('con_done=', con_done)
+                            break
+                        else:
+                            continue
 
         # if select device is invalid or connect failed
         self._interface.flush_input()
@@ -2248,36 +2255,6 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
         return ret
 
-    def check_mem_survive(self) -> Optional[CC2650Device]:
-
-        ack = []
-        ins = bytearray()
-        ins.append(10)
-        ins.append(1) #length
-        ins.append(0xF1)
-
-        try:
-            self._cc2650.send("bytes", bytes(ins))
-
-        except SerialTimeoutException as e:
-            raise RecvTimeout('device CC2650 check_mem_survive timeout') from e
-
-        else:
-            # sleep(1)
-            try:
-                ack = self._cc2650.recv_uart(timeout = 0.1)
-
-            except RecvTimeout:
-                self.log_info("no survive device")
-
-            else:
-                print('ack=', ack)
-
-        if ack == [3]:
-            return True
-
-        return False
-
     @synchronized
     def disconnect(self, device: int, force=False) -> bool:
         self.log_info(DEVICE_DISCONNECTING, device)
@@ -2288,7 +2265,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         ins.append(0xF1)
 
         try:
-            print('send_disconnect',list(ins))
+            # print('send_disconnect',bytes(ins))
             self._cc2650.send("bytes", bytes(ins))
 
         except RecvTimeout:
@@ -2323,20 +2300,28 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         ins.append(handle)
         ins.append(0xF1)
 
-        try:
-            print('read_characteristic',list(ins))
-            self._cc2650.send("bytes", bytes(ins))
-            
-        except SerialTimeoutException:
-            raise RecvTimeout('device CC2650 send read_characteristic fail')
+        for _ in range(2):
+            try:
+                # print('send_read',bytes(ins))
+                self._cc2650.send("bytes", bytes(ins))
+            except SerialTimeoutException:
+                raise RecvTimeout('device CC2650 send read_characteristic fail')
 
-        try:
-            ret = self._cc2650.recv_uart(timeout = 2)
-        except Exception as e2:
-            raise RecvTimeout()
-        else:
-            # print("======== read ret = ", ret)
-            self._interface.flush_input()
+            try:
+                ret = self._cc2650.recv_uart(timeout = 2)
+            except Exception as e2:
+                raise RecvTimeout()
+            else:
+                # print("======== read ret = ", ret)
+                self._interface.flush_input()
+
+        # try:
+        #     ret = self._cc2650.recv_uart(timeout = 1)
+        # except Exception as e2:
+        #     raise RecvTimeout()
+        # else:
+        #     # print("read_characteristic ret = ", ret)
+        #     pass
 
         if ret is None:
             return None
@@ -2364,21 +2349,23 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
 
         try:
-            self._cc2650.send("bytes", list(data_array))
-            print('send_write',list(data_array))
+            self._cc2650.send("bytes", bytes(data_array))
+            # print('send_write',bytes(data_array))
 
         except SerialTimeoutException as e:
             raise RecvTimeout('device CC2650 send instruction fail') from e
 
         # read error code
         try:
-            ret = self._cc2650.recv_uart(timeout = 0.1)
-            print('ret=', ret)
+            ret = self._cc2650.recv_uart()
 
             # print("_______  write ack = ", ret)
         except Exception as e2:
             pass
 
+        else:
+            pass
+
         self._interface.flush_input()
         self._interface.flush_output()
 
@@ -2555,78 +2542,24 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
         else:
             self.log_warn('cannot %s notify for device : %s' % (message, device.__class__.__name__))
 
-    # def reset(self, device: Optional[List[int]] = None, software_reset=True):
-    #     print('resettt---------15')
-    #     print()
-
-    #     # self.log_verbose('reset')
-
-    #     # reset hardware
-    #     # print("reset device = ", device)
-    #     print('device:', device, software_reset)
-    #     print('self._device', list(self._device))
-    #     print('self._cc2650_once:', list(self._cc2650))
-    #     print('|')
-    #     print('|')
-    #     for i in range(len(self._cc2650)):
-    #         print('i', i)
-    #         if device is None or i in device:
-    #             self._device[i] = None
-
-    #             m = self._cc2650[i]
-
-    #             if m is None:
-    #                 m = CC2650SingleMasterCentralDevice(self._master, self._interface, self._options)
-
-    #             self._interface.flush()
-    #             self._selector.select(i)
-
-    #             try:
-    #                 self.log_info('reset device', i)
-
-    #                 with m:
-    #                     m.reset_internal()
-    #                     m.reset_hardware()
-                        
-    #                     if software_reset:
-    #                         check_mem_survive_flag = m.check_mem_survive()
-    #                         if check_mem_survive_flag:
-    #                             self._cc2650[i] = m
-
-    #             except RecvTimeout:
-    #                 self.log_warn('reset device', i, 'fail')
-    #                 self._cc2650[i] = None
-
-    #     print('self._cc2650::', list(self._cc2650))
-
-    #     return
-
     def reset(self, device: Optional[List[int]] = None, software_reset=True):
-        print('resettt---------15')
-        print()
-
         # self.log_verbose('reset')
 
         # reset hardware
         # print("reset device = ", device)
-        print('device:', device, software_reset)
-        print('self._device', list(self._device))
-        print('self._cc2650_once:', list(self._cc2650))
-        print('|')
-        print('|')
-
         for i in range(len(self._cc2650)):
-            if device is None:
+            if device is None or i in device:
                 self._device[i] = None
 
                 m = self._cc2650[i]
 
                 if m is None:
                     m = CC2650SingleMasterCentralDevice(self._master, self._interface, self._options)
+                    # m.set_log_level(self._cc2650_log_level)
 
                 self._interface.flush()
                 self._selector.select(i)
-
+                # self._mem_selector.select(i)
 
                 try:
                     self.log_info('reset device', i)
@@ -2634,20 +2567,51 @@ class CC2650MultiMasterCentralDevice(CC2650MasterDevice, Synchronized):
                     with m:
                         m.reset_internal()
                         m.reset_hardware()
-                        
-                        
-                        if not software_reset:
-                            check_mem_survive_flag = m.check_mem_survive()
-                            if check_mem_survive_flag:
-                                self._cc2650[i] = m
+
+                        if software_reset:
+                            m.reset_software()
+                            self._cc2650[i] = m
 
                 except RecvTimeout:
                     self.log_warn('reset device', i, 'fail')
                     self._cc2650[i] = None
 
-        print('self._cc2650::', list(self._cc2650))
+        if not software_reset:
+            return
 
-        return
+        # check reset result
+        available_device_id = list(map(lambda it: it[0],
+                                       filter(lambda it: it[1] is not None,
+                                              enumerate(self._cc2650))))
+
+        if len(available_device_id) == 0:
+            raise RuntimeError("reset fail, no device found")
+
+        self.log_verbose('available device', ' '.join(map(str, available_device_id)))
+
+        # initial hardware
+        for i in range(len(self._cc2650)):
+            m = self._cc2650[i]
+
+            if m is not None:
+                self._interface.flush()
+                self._selector.select(i)
+                # self._mem_selector.select(i)
+
+                try:
+                    self.log_info('init device', i)
+
+                except RecvTimeout:
+                    self.log_warn('init device', i, 'fail')
+                    self._cc2650[i] = None
+
+        # check init result, again
+        available_device_id = list(map(lambda it: it[0],
+                                       filter(lambda it: it[1] is not None,
+                                              enumerate(self._cc2650))))
+
+        if len(available_device_id) == 0:
+            raise RuntimeError("init fail, no device success")
 
     def reset_empty_master(self, device: Optional[List[int]] = None, software_reset=True):
         self.log_verbose('reset')

python/biopro/device/manager.py

@@ -261,8 +261,7 @@ class DeviceManager(MasterDevice, Synchronized):
 
     __slots__ = ('_handler', '_options',
                  '_library_path', '_library',
-                 '_interface', '_master', '_found_history', '_found', '_device', '_master_log_level',
-                 '_mem_survive_channel')
+                 '_interface', '_master', '_found_history', '_found', '_device', '_master_log_level')
 
     def __init__(self,
                  options: DeviceManagerOptions,
@@ -382,13 +381,8 @@ class DeviceManager(MasterDevice, Synchronized):
         """reset master device"""
         self._device.clear()
         self._demo.clear()
-        print('resettt---------21')
-        print()
         self._centralMaster.reset(device, software_reset)
 
-    def get_mem_survive_channel(self):
-        return self._mem_survive_channel
-
     def available_device(self) -> List[int]:
         return self._centralMaster.available_device()
 

python/biopro/devlib/data.py

@@ -890,11 +890,11 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
         finish_mode_falg = data[19]
 
         # print('decode', list(data[20:]))
-        mem_wrong = data[120]
-        mem_retry_cnt = data[121]
-        mem_green_wrong = data[122]
-        mem_green_retry_cnt = data[123]
-        ram_num = data[124]
+        mem_wrong = data[20]
+        mem_retry_cnt = data[21]
+        mem_green_wrong = data[22]
+        mem_green_retry_cnt = data[23]
+        ram_num = data[24]
         broken_flag = data[-1]
 
         if (finish_mode_falg & 0b11110000 == 0b10100000):
@@ -1378,41 +1378,46 @@ class EISZeroOneDataDecoder(RecDataDecoder):
 
             index = 20
             for i in range(index, index+16, 8):
-                phase_para_a.append(struct.unpack('>I', cali_coeff[i+1:i+5])[0])
+                phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
                 phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0])
 
             index = 40
             for i in range(index, index+16, 8):
-                phase_para_a.append(struct.unpack('>I', cali_coeff[i+1:i+5])[0])
+                phase_para_a.append(struct.unpack('>i', cali_coeff[i+1:i+5])[0])
                 phase_para_b.append(struct.unpack('>i', cali_coeff[i+5:i+9])[0]) 
 
             #Lv[0] 160k
             index = 60
-            hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
             hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
             hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             #Lv[1] 20k
             index = 80
-            hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
             hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             #Lv[2] 5k
             index = 100
-            hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
             hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
             hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
 
             #Lv[3] 200R
             index = 120
-            hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0])
-            hsrtia_b.append(struct.unpack('>I', cali_coeff[index+5:index+9])[0]/1e6)
-            hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e5)
-            hsrtia_d.append(struct.unpack('>I', cali_coeff[index+13:index+17])[0]/1e6)
+            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
+            hsrtia_d.append(struct.unpack('>B', cali_coeff[index+13:index+14])[0])
+
+            # hsrtia_a.append(struct.unpack('>I', cali_coeff[index+1:index+5])[0])
+            # hsrtia_b.append(struct.unpack('>I', cali_coeff[index+5:index+9])[0]/1e6)
+            # hsrtia_c.append(struct.unpack('>I', cali_coeff[index+9:index+13])[0]/1e5)
+            # hsrtia_d.append(struct.unpack('>I', cali_coeff[index+13:index+17])[0]/1e6)
 
             # print('cutoff_freq', cutoff_freq)
             # print('hsrtia_a', hsrtia_a)
@@ -1492,13 +1497,19 @@ class EISZeroOneDataDecoder(RecDataDecoder):
 
                     voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 / cutoff_freq ** 2)
 
-                    if (gain == 3):
-                        current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
-                    else:
-                        current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
+                    # if (gain == 3):
+                    #     current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
+                    # else:
+                    current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
+                    # print(current)
+                    # print(voltage_mag)
+                    # print(hsrtia_a[gain])
+                    # print(hsrtia_b[gain])
+                    # print(hsrtia_c[gain])
 
                     if (current != 0):
-                        impedance = voltage_amp * 1000000 / current 
+                        # impedance = voltage_amp * 1000_000 / 1.414213 / current 
+                        impedance = voltage_amp * 707106.78 / current 
                     else:
                         impedance = 0
 

python/biopro/impl/ext_mem.py

@@ -25,26 +25,25 @@ _SLEEP_TIME_ = 0.001
 def zero_buffer(size: int) -> List[int]:
     return [0] * size
 
-class MultiExtMemSpiInterface(LowLevelHardwareInterface):
+
+class ExtMemSpiInterface(LowLevelHardwareInterface):
     MEM_INS_MARKED = [MEM_INS_WRITE, 0, 2, 1, 1]
     MEM_INS_RESET  = [MEM_INS_WRITE, 0, 2, 1, 1, 0, 0xFF]
 
-    __slots__ = ('_selector', '_wait_for_first_data', '_spi', '_tx_buffer', '_tx_buffer_header', '_tx_buffer_data',
+    __slots__ = ('_spi', '_tx_buffer', '_tx_buffer_header', '_tx_buffer_data',
                  'pin_busy', 'pin_request', 'pin_reset', 'pin_sel',
                  '_pin_sel_val',
                  '_read_green_times','_read_red_times',
                  '_elite_data_len', '_mem_header_len', '_mem_tailer_len', '_single_data_len',
                  '_head_wrong_cnt')
 
-    def __init__(self,
-                 select: Selector,
-                 device: Tuple[int, int] = None):
-
+    def __init__(self, device: Tuple[int, int] = None):
+        super().__init__()
         self._spi = HardwareImplSpiInterface(device,
                                              spi_speed=12_000_000  # XXX temp parameter
                                              )
 
-        self._elite_data_len = 120
+        self._elite_data_len = 20
         self._mem_header_len = 3
         self._mem_tailer_len = 8
         self._single_data_len = self._elite_data_len + self._mem_header_len + self._mem_tailer_len
@@ -60,70 +59,46 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
         self.pin_reset = OutputPin.get_used(P3Pin.MEM_RST, True)
         self.pin_sel: Optional[InputPin] = InputPin.get_used(P3Pin.MEM_SEL)
 
+        self._pin_sel_val = False
+
         self._read_green_times = 0
         self._read_red_times = 0
 
         self._head_wrong_cnt = [0, 0, 0, 0, 0, 0, 0, 0]
 
-
-        self._selector = select
-
-        self._pin_sel_val = [False for _ in range(Selector.SIZE)]
-        self._wait_for_first_data = [True for _ in range(Selector.SIZE)]
-
-    @property
-    def select(self) -> int:
-        return self._selector.channel
-
-    @select.setter
-    def select(self, value: int):
-        self._selector.select(value)
-
-    def changed(self, flip=False) -> bool:
-        channel = self._selector.channel
-        old = self._pin_sel_val[channel]
-        value = bool(self.pin_sel)
-
-        if flip:
-            self._pin_sel_val[channel] = value
-
-        return value != old
-
     def reset(self):
         self._spi.reset()
 
     def close(self):
-        self._selector.close()
         self._spi.close()
 
     def flush(self):
         self.pin_reset.output(False)
         self.pin_reset.output(True)
 
+    @property
+    def select(self) -> int:
+        return 0
+
+    @select.setter
+    def select(self, value: int):
+        pass
+
+    def changed(self, flip=False) -> bool:
+        old = self._pin_sel_val
+        value = self.pin_sel.input()
+
+        if flip:
+            self._pin_sel_val = value
+
+        return value != old
+
     def send_byte(self, data: bytes):
         raise RuntimeError()
 
     def recv_byte(self, size: int) -> Optional[bytes]:
         raise RuntimeError()
 
-    # def flush_all(self):
-    #     for _ in self._selector.foreach():
-    #         self.pin_reset.output(False)
-    #         self.pin_reset.output(True)
-
-    def foreach(self) -> Iterable[int]:
-        for channel in self._selector.foreach():
-            yield channel
-
-    def set_wait_flag(self, spi_idx:int = None, value:bool = None):
-        self._wait_for_first_data[spi_idx] = value
-    
-    def get_wait_flag(self, spi_idx:int = None)  -> Optional[bool]:
-        if spi_idx < Selector.SIZE:
-            return self._wait_for_first_data[spi_idx]
-        else:
-            return None
-
     def request_data(self):
         self.pin_request.output(False)
         sleep(0.001)
@@ -187,6 +162,7 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
             address = 0
 
             # first read to get data length
+            tx = self._tx_buffer
             tx_h = self._tx_buffer_header
 
             tx_h[0] = MEM_INS_READ
@@ -380,23 +356,90 @@ class MultiExtMemSpiInterface(LowLevelHardwareInterface):
 
         self._spi.send_byte(tx)
 
+    def flush_all(self):
+        self.flush()
+
+    def foreach(self) -> Iterable[int]:
+        yield 0
+
+
+class MultiExtMemSpiInterface(ExtMemSpiInterface):
+    __slots__ = ('_selector', '_wait_for_first_data')
+
+    def __init__(self,
+                 select: Selector,
+                 device: Tuple[int, int] = None):
+        super().__init__(device)
+
+        self._selector = select
+
+        self._pin_sel_val = [False for _ in range(Selector.SIZE)]
+        self._wait_for_first_data = [True for _ in range(Selector.SIZE)]
+
+    @property
+    def select(self) -> int:
+        return self._selector.channel
+
+    @select.setter
+    def select(self, value: int):
+        self._selector.select(value)
+
+    def changed(self, flip=False) -> bool:
+        channel = self._selector.channel
+        old = self._pin_sel_val[channel]
+        value = bool(self.pin_sel)
+
+        if flip:
+            self._pin_sel_val[channel] = value
+
+        return value != old
+
+    def reset(self):
+        self._spi.reset()
+
+    def close(self):
+        self._selector.close()
+        super().close()
+
+    def flush_all(self):
+        for _ in self._selector.foreach():
+            self.pin_reset.output(False)
+            self.pin_reset.output(True)
+
+    def foreach(self) -> Iterable[int]:
+        for channel in self._selector.foreach():
+            yield channel
+
+    def set_wait_flag(self, spi_idx:int = None, value:bool = None):
+        self._wait_for_first_data[spi_idx] = value
+    
+    def get_wait_flag(self, spi_idx:int = None)  -> Optional[bool]:
+        if spi_idx < Selector.SIZE:
+            return self._wait_for_first_data[spi_idx]
+        else:
+            return None
+
+
 class ExtMemManager:
-    def __init__(self, ext_mem: MultiExtMemSpiInterface):
+    def __init__(self, ext_mem: ExtMemSpiInterface):
         self._mem_sel = InputPin.get_used(P3Pin.MEM_SEL, pull_up_down=True)
         self._mem_req = OutputPin.get_used(P3Pin.MEM_REQ, initial=True)
 
         self._ext_mem = ext_mem
 
-        print('ExtMemManager.....')
-        print()
+    @property
+    def mem_sel(self) -> int:
+        return int(self._mem_sel)
+
+    @property
+    def mem_req(self) -> int:
+        return int(self._mem_req)
 
     def mem_request(self):
         self._mem_req.pulse()
         sleep(_SLEEP_TIME_)
 
     def get_ext_mem_register(self) -> List[Tuple[Optional[int], Optional[int]]]:
-        print('get_ext_mem_register......')
-        print()
         ret = [(None, None) for _ in range(Selector.SIZE)]
 
         for channel in self._ext_mem.foreach():
@@ -440,12 +483,36 @@ class ExtMemManager:
 
         return 0
 
-    def get_available_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
-        print('get_available_channel......')
-        print()
+    def get_no_device_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
         if result is None:
             result = self.get_ext_mem_register()
 
+        ret = []
+
+        for channel, result in enumerate(result):
+            if self.is_no_device(result):
+                ret.append(channel)
+
+        return ret
+
+    def get_memory_test_fail(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
+        if result is None:
+            result = self.get_ext_mem_register()
+
+        ret = []
+
+        for channel, result in enumerate(result):
+            if self.is_no_device(result):
+                continue
+
+            if self.is_memory_test_fail(result) != 0:
+                ret.append(channel)
+
+        return ret
+
+    def get_available_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
+        if result is None:
+            result = self.get_ext_mem_register()
 
         ret = []
 
@@ -460,3 +527,172 @@ class ExtMemManager:
 
         return ret
 
+    def test_available_channel(self, result: List[Tuple[Optional[int], Optional[int]]] = None) -> List[int]:
+        if result is None:
+            result = self.get_ext_mem_register()
+
+        available_channel = []
+
+        for channel, result in enumerate(result):
+            r1, r2 = result
+
+            if self.is_no_device(result):
+                print('channel', channel, 'no device')
+                continue
+
+            test_pass = True
+
+            if r1 is None or r2 is None:
+                test_pass = False
+                print('channel', channel, 'mem_sel', 'x', 'not change')
+
+            if r1 is not None and r1 > 0 and r1 != DEFAULT_REGISTER_VALUE:
+                test_pass = False
+                print('channel', channel, 'mem_sel', 0, 'register', r1)
+
+            if r2 is not None and r2 > 0 and r2 != DEFAULT_REGISTER_VALUE:
+                test_pass = False
+                print('channel', channel, 'mem_sel', 1, 'register', r2)
+
+            if test_pass:
+                print('channel', channel, 'mem_sel', 0, 'register', r1)
+                print('channel', channel, 'mem_sel', 1, 'register', r2)
+                available_channel.append(channel)
+
+        return available_channel
+
+    def test_memory_read_write(self, channel: int, print_result=False) -> bool:
+        self._ext_mem.select = channel
+
+        addr = 4
+        size = 100
+        test_pass = True
+
+        while addr < MEM_SIZE:
+            d1 = [randint(10, 99) for _ in range(size)]
+            d2 = [randint(10, 99) for _ in range(size)]
+
+            self.mem_request()
+            m1 = int(self._mem_sel)
+            self._ext_mem.write_memory(addr, d1)
+
+            self.mem_request()
+            m2 = int(self._mem_sel)
+            self._ext_mem.write_memory(addr, d2)
+
+            self.mem_request()
+            m11 = int(self._mem_sel)
+            r1 = self._ext_mem.read_memory(addr, size)
+
+            if m1 != m11:
+                test_pass = False
+                if print_result:
+                    print('channel', channel, 'mem_sel not change')
+
+            if d1 != r1:
+                test_pass = False
+                if print_result:
+                    self.print_bytes_diff(d1, r1)
+
+            self.mem_request()
+            m22 = int(self._mem_sel)
+            r2 = self._ext_mem.read_memory(addr, size)
+
+            if m2 != m22:
+                test_pass = False
+                if print_result:
+                    print('channel', channel, 'mem_sel not change')
+
+            if d2 != r2:
+                test_pass = False
+                if print_result:
+                    self.print_bytes_diff(d2, r2)
+
+            addr += size
+
+        return test_pass
+
+    @staticmethod
+    def print_bytes_diff(_1: List[int], _2: List[int]):
+        s1 = ''
+        s2 = ''
+
+        l1 = len(_1)
+        l2 = len(_2)
+
+        for i in range(min(l1, l2)):
+            v1 = _1[i]
+            v2 = _2[i]
+
+            if v1 == v2:
+                s1 += '%02X ' % v1
+                s2 += '%02X ' % v2
+            else:
+                s1 += '%02X ' % v1
+                s2 += pc('%02X' % v2, RED) + ' '
+
+        if l1 == l2:
+            pass
+
+        elif l1 < l2:
+            for i in range(l1, l2):
+                s2 += pc('%02X' % _2[i], GREEN) + ' '
+        else:
+            for i in range(l2, l1):
+                s1 += pc('%02X' % _1[i], RED) + ' '
+
+        print(s1)
+        print(s2)
+
+
+def hardware_test():
+    ext_mem = MultiExtMemSpiInterface(Selector.get(Selector.MEM_SELECTOR))
+
+    fake_mode = False
+
+    try:
+        ext_mem.reset()
+    except FileNotFoundError:
+        fake_mode = True
+
+    ret = {
+        'channel_count': Selector.SIZE,
+        'memory_size':   MEM_SIZE,
+        'pin_mem_req':   P3Pin.MEM_REQ,
+        'pin_mem_sel':   P3Pin.MEM_SEL,
+    }
+
+    if not fake_mode:
+        tester = ExtMemManager(ext_mem)
+
+        result = tester.get_ext_mem_register()
+        no_device = tester.get_no_device_channel(result)
+        reg_fail = tester.get_memory_test_fail(result)
+        available = tester.get_available_channel(result)
+
+        channel = ['unknown' for _ in range(Selector.SIZE)]
+
+        for ch in range(len(channel)):
+            if ch in no_device:
+                channel[ch] = 'no_device'
+
+            elif ch in reg_fail:
+                channel[ch] = 'reg_fail'
+
+            elif not tester.test_memory_read_write(ch):
+                channel[ch] = 'mem_fail'
+
+            else:
+                channel[ch] = 'available'
+
+        ret['register'] = result
+        ret['available'] = available
+        ret['channel'] = channel
+
+    return ret
+
+
+if __name__ == '__main__':
+    from pprint import pprint
+
+    pprint(hardware_test())

python/biopro/main.py

@@ -280,14 +280,11 @@ class Main(CliMain):
     @cli_command('controller')
     def _controller_server(self, command: str, argv: List[str]):
         """controller server"""
-        print(self, command, argv)
-        print('##_controller_server')
         return _ControlServer
 
     @cli_command('data')
     def _data_server(self, command: str, argv: List[str]):
         """data server"""
-        print('##_data_server')
         return _DataServer
 
     @cli_command('export')
@@ -305,7 +302,6 @@ class Main(CliMain):
         return LEDControlMain(command)
 
     def run(self):
-        print('RUN!!!!!!!!!!!!!!!!!!!')
         self.print_help()
 
 
@@ -339,16 +335,15 @@ class _ServerMain(CliSubCommandMain, metaclass=abc.ABCMeta):
     def run(self):
         exit_code = 1
 
-        print('create_server')
-
         server = self.create_server()
-        exit_code = server.main()
-        print('....after create_server')
-        print('..    ..')
-        print()
+
+        if _RUNTIME_COMPILE:
+            exit_code = server.main()
+        else:
+            with self.profiling_options.generate_profile_context():
+                exit_code = server.main()
 
         sys.exit(exit_code)
-        
 
 
 # noinspection PyUnusedLocal
@@ -360,7 +355,6 @@ class _ControlServer(_ServerMain):
         from biopro.device.manager import DeviceManagerOptions
         from biopro.server.data import DataServerOptions
         from biopro.exp_pro.manager import ExpManagerOption
-        print('command', command)
 
         super().__init__(command)
 
@@ -462,8 +456,6 @@ class _ControlServer(_ServerMain):
     def create_server(self) -> SocketServer:
         from biopro.server.main import ControlServer
 
-        print('..create_server')
-
         return ControlServer(self.server_device_options,
                              self.server_data_options,
                              self.server_controller_options,
@@ -485,11 +477,8 @@ class _DataServer(_ServerMain):
     def create_server(self) -> SocketServer:
         from biopro.server.data import DataServer
 
-        print('.1.create_server')
-
         return DataServer(self.server_data_options)
 
 
 if __name__ == '__main__':
-    print('START!!!!!!!!!!!!!!!!!!!!!!!!')
     Main().main()

python/biopro/server/data.py

@@ -10,7 +10,7 @@ import base64
 from biopro.data import *
 from biopro.devlib.data import *
 from biopro.generator import GeneratorOptions
-from biopro.impl.ext_mem import MultiExtMemSpiInterface, ExtMemManager
+from biopro.impl.ext_mem import ExtMemSpiInterface, MultiExtMemSpiInterface, ExtMemManager
 from biopro.impl.selector import Selector
 from biopro.recording import RecordingMetaFile, RecordingFileWriter
 from biopro.util.address import EMPTY_ADDRESS, address_str
@@ -132,7 +132,7 @@ class DataServer(SocketServer, DataAPI):
 
         if self._spi is not None:
             self.log_verbose('spi flush')
-            # self._spi.flush_all()
+            self._spi.flush_all()
 
             self.reset_available_channel()
 
@@ -199,8 +199,6 @@ class DataServer(SocketServer, DataAPI):
 
         self.setup_spi(spi_mode)
 
-        print('self.setup()')
-        print()
         # restart
         self.setup()
 
@@ -226,9 +224,9 @@ class DataServer(SocketServer, DataAPI):
             return
         elif spi_mode == self.MODE_DISABLE:
             spi = None
+        elif spi_mode == self.MODE_SINGLE:
+            spi = ExtMemSpiInterface()
         elif spi_mode == self.MODE_SELECTOR:
-            print('~~~~~')
-            print()
             spi = MultiExtMemSpiInterface(Selector.get(Selector.MEM_SELECTOR))
         else:
             raise ValueError('illegal spi mode : ' + spi_mode)
@@ -306,8 +304,6 @@ class DataServer(SocketServer, DataAPI):
         return self._spi_mode
 
     def available_channel(self, reset=False) -> List[int]:
-        print('!!!!!!!!!!!!!!')
-        print()
         if reset:
             self.reset_available_channel()
 

python/biopro/server/main.py

@@ -84,9 +84,7 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         # data server
         data_options = DataServerOptions.get_options(*options)
         data_options.repository = device_option.repository
-        print('self.data_server')
         self.data_server = DataServerProcess(data_options)
-        print('self.data_server')
 
         # experimental protocol
         # exp_options = ExpManagerOption.get_options(*options)
@@ -200,8 +198,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
     def setup(self) -> None:
         """setup the control server
         """
-        print('ControlServer: setup')
-        print()
         # print allow host
         from biopro.util.inet import allow_host
 
@@ -221,7 +217,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
             self.run_thread(_RandomCrashThread())
 
         # data server
-        print('start_process')
         interface = self.device_manager.interface
         options = self.data_server.options
         if interface == DeviceHardwareInterface.INTERFACE_DUMMY:
@@ -232,7 +227,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         options.storage_root = str(self.file_manager.storage_root)
 
         self.data_server.start_process()
-        print('start_process___')
 
         # file manager
         self.log_verbose('setup file manager')
@@ -242,9 +236,7 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
 
         # device manager
         self.log_verbose('setup device manager')
-        print('self.device_manager.setup()')
         self.device_manager.setup()
-        print('self.device_manager.setup()____')
         self.submit_thread(self._setup_library)
 
         # device manager reset
@@ -277,9 +269,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
             self.mqtt_thread.start()
             # self.run_thread(self.mqtt_thread)
 
-        print('ControlServer: setup______end')
-        print()
-
     def _setup_file_manager(self):
         self.log_verbose('setup file manager')
 
@@ -323,8 +312,7 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
 
     def _setup_device(self):
         # wait data server
-        print('resettt---------30')
-        print()
+
         self.log_verbose('device hardware reset')
         self.device_manager.reset(software_reset=False)
 
@@ -374,8 +362,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
         while retry < 10:
             try:
                 with client:
-                    print('resettt---------31')
-                    print()
                     client.reset()
                     break
             except RuntimeError:
@@ -417,8 +403,6 @@ class ControlServer(SocketServer, ControlServerAPI, CacheAPI, CacheNotifyHandler
     def _setup_device_manager(self, available_channel: List[int]):
         # device reset
         # only reset those device has channel available
-        print('resettt---------33')
-        print()
         self.log_verbose('reset device')
         self.device_manager.reset(available_channel)
 

python/biopro/server/process.py

@@ -121,7 +121,6 @@ class ControllerProcess(LoggerFlag, Generic[PO, PC], metaclass=abc.ABCMeta):
         cmd = current_command_header()
 
         cmd.extend(arg)
-        print('cmd', cmd, env)
 
         self.__process = process = Popen(cmd, env=env)
         self.log_info('process PID :', process.pid)

python/biopro/server/recording.py

@@ -465,7 +465,7 @@ class RecordingProcess(Process):
         """
         raw_data = []
         index = 0
-        elite_data_len = 120
+        elite_data_len = 20
         mem_header_len = 3
         mem_tailer_len = 8
         single_data_len = elite_data_len + mem_header_len + mem_tailer_len

python/biopro/util/cli.py

@@ -621,20 +621,16 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
                 self.__cli_help_document[handle] = _resolve_doc(handle.help_doc)
 
     def main(self, argv: List[str] = None):
-        print('main', argv)
         if argv is None:
-            print('Main None', sys.argv[1:])
             argv = sys.argv[1:]
 
         try:
             argv = self.parsing(argv)
-            print('1', argv)
 
             if argv is None:
                 self.run()
             else:
                 command, *argv = argv
-                print('2', command, argv)
 
                 self.invoke_subcommand(command, argv)
 
@@ -658,7 +654,6 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
 
         while i < len(argv):
             arg = argv[i]
-            print('arg', i, arg)
 
             if not left_all and arg.startswith('-'):
 
@@ -681,7 +676,6 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
 
             else:
                 # sub command
-                print('self._cli_commands', self._cli_commands)
                 if parsing_sub_command and j == 0:
                     if arg in self._cli_commands:
                         return argv[i:]
@@ -717,7 +711,7 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
             # handle not found
             return False
 
-        print('_handle_flags_', arg)
+        # print('_handle_flags_', arg)
         handle.invoke(arg)
 
         if handle.force_return:
@@ -734,7 +728,6 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
         :return: number of arguments consumed, 0 if fail.
         """
         arg, value = part_suffix(arg, '=')
-        print('_handle_options_', arg, value)
 
         handle = self._cli_options.get(arg, None)
 
@@ -768,7 +761,6 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
         :return: None if fail, true if left all.
         """
         a = self._cli_arguments
-        print('cli_argument', arg, pos, a)
         handle = a.get(pos, None)
 
         if handle is None and pos == 0:
@@ -825,11 +817,10 @@ class CliMain(AbstractCliMain, metaclass=abc.ABCMeta):
         :return:
         """
         handle = self._cli_commands.get(command, None)
-        print('handle', handle)
 
         if handle is None:
             raise RuntimeError('sub-command not found : ' + command)
-    
+
         return handle.invoke(command, argv)
 
     def print_help(self, print_usage=True, file: Optional[IO] = None) -> None:

python/biopro/util/cli_base.py

@@ -529,7 +529,6 @@ class CliHandleCommand(CliHandle):
         """
         try:
             main = self.handle(self._target, command, argv)
-            print('3', main, self._target, command, argv)
 
         except (MainForceReturn, SystemExit, KeyboardInterrupt):
             raise
@@ -547,7 +546,6 @@ class CliHandleCommand(CliHandle):
             elif isinstance(main, type):
                 # initialize CliSubCommandMain
                 main = main(command)
-                print('4', main)
 
             if not isinstance(main, AbstractCliMain):
                 raise RuntimeError('not a CliSubCommandMain : ' + type(main).__class__)

python/biopro/util/profile.py

@@ -64,10 +64,8 @@ class ProfileOptions(CliOptions):
         self.profiling_sorting = fields
 
     def generate_profile_context(self) -> 'ProfileContext':
-        print('self.profiling_method:', self.profiling_method)
         if self.profiling_method is None:
             ret = _NullProfileContext(self)
-            print('ret=', ret)
 
         else:
             try:

python/res/devlib/json/elite_eis.devlib.json

@@ -102,7 +102,7 @@
       "record_meta": true,
       "initial": 0,
       "domain": [
-          4096
+          35001
       ],
       "value": {
           "expression": "VALUE"