[update] need to try execute_batch for optimize

package.json

@@ -7,7 +7,7 @@
   "scripts": {
     "start": "gulp nodemon",
     "dev": "gulp",
-    "build": "babel src -d dist",
+    "build": "babel src -d dist --copy-files",
     "production": "node dist/app.js",
     "test": "jest",
     "link": "eslint .",

src/config.js

@@ -25,7 +25,7 @@ export const DB = {
 
 export const pgDB = {
   host: '127.0.0.1', // 服务器地址
-  port: 54321, // 数据库端口号
+  port: 5432, // 数据库端口号
   username: 'biopro', // 数据库用户名
   password: 'BioProControlBox', // 数据库密码
   database: 'postgres' // 数据库名称

src/controllers/analysis/index.js

@@ -0,0 +1,57 @@
+import RecordingDataMeta from '../../models/file/recording_data_meta'
+import childProcess from 'child_process'
+import path from 'path'
+
+const recordingDataMeta = new RecordingDataMeta()
+
+export const spikeDetect = async (ctx, next) => {
+  const request = ctx.request.body
+
+  const id = request.id
+  const channel = request.channel
+  const cutOffFreq = request.cut_off_freq
+  const threshold = request.threshold
+  const waveForm = request.waveForm
+  const retDataType = request.ret_data_type
+  // console.log(id, channel, cutOffFreq, threshold, waveForm)
+
+  const result = await recordingDataMeta.getByID(id)
+  const channels = JSON.parse(result[0].channels)
+  const sampleRate = 8e5 / result[0].parameter_set.ADC_CLOCK / channels.length
+  const timeDuration = result[0].time_duration / 1e6
+  // console.log(sampleRate, timeDuration)
+
+  const process = childProcess.spawnSync('python3', [
+    path.join(__dirname, '/spikeDetect.py'),
+    'meta_id=' + id,
+    'channel=' + channel,
+    'cut_off_freq=' + cutOffFreq,
+    'threshold=' + threshold,
+    'waveform=' + waveForm,
+    'sample_rate=' + sampleRate,
+    'time_duration=' + timeDuration,
+    'ret_data_type=' + retDataType
+  ], { maxBuffer: 2 * 1024 * 1024 * 1024 })
+
+  // console.log('out', process.stdout.toString())
+  console.log('err', process.stderr.toString())
+
+  ctx.body = process.stdout.toString()
+
+  // const process = child_process.execSync('python3 /Users/lubokai/Desktop/bioproapiserver/src/controllers/analysis/test.py 1089 0')
+  // console.log(process)
+  // process.stdout.on('data', (data) => {
+  //   _data += data.toString()
+  // })
+
+  // process.stderr.on('data', (data) => {
+  //   console.error(data.toString())
+  // })
+
+  // process.on('exit', (code) => {
+  //   console.log(_data)
+  //   console.log(`Child exited with code ${code}`)
+  // })
+
+  next()
+}

src/controllers/analysis/spikeDetect.py

@@ -0,0 +1,110 @@
+import sys
+import ast
+import psycopg2
+import numpy as np
+import pandas as pd
+
+from math import ceil, floor
+from json import loads, dumps
+from scipy.fft import fft, fftfreq, rfft, rfftfreq, irfft, ifft
+
+if __name__ == '__main__':
+
+  params = {}
+  for input in sys.argv[1:]: #Now we're going to iterate over argv[1:] (argv[0] is the program name)
+      param  = input.split("=") #Get what's left of the '='
+      params[param[0]] = param[1]
+
+  meta_id = params['meta_id']
+  channel = params['channel']
+  cut_off_freq = int(params['cut_off_freq'])
+  threshold = ast.literal_eval('[' + params['threshold'] + ']')
+  waveform = ast.literal_eval('[' + params['waveform'] + ']')
+  SAMPLE_RATE = int(params['sample_rate'])
+  DURATION = ceil(float(params['time_duration']))
+  DELTA_TIME = 1e6 / SAMPLE_RATE
+  N = SAMPLE_RATE * DURATION
+  ret_data_type = params['ret_data_type']
+
+  # print(meta_id, channel, cut_off_freq, threshold, waveForm, SAMPLE_RATE, DURATION, N)
+
+  conn = psycopg2.connect(database="postgres", user="biopro", password="BioProControlBox", host="127.0.0.1", port="5432")
+  cur = conn.cursor()
+  sql_str = 'SELECT data FROM "public"."' + str(channel) + '_recording_data_raws" WHERE parent = ' + meta_id + 'ORDER BY id ASC'
+  cur.execute(sql_str)
+  ret = None
+  try:
+      ret = cur.fetchall()
+  except BaseException as e:
+    print(e)
+    exit
+  finally:
+      time = np.array([], dtype=int)
+      data = np.array([])
+
+      for sub_data in ret:
+        for split_data in sub_data[0].split('"***"')[:-1]:
+          value = np.array(split_data.split(' '))
+          time = np.append(time, value[::2].astype(np.int))
+          data = np.append(data, value[1::2].astype(np.int))
+
+      # print(len(time), len(data))
+      
+      xf = rfftfreq(N, 1 / SAMPLE_RATE)
+      points_per_freq = len(xf) / (SAMPLE_RATE / 2)
+      target_idx = int(points_per_freq * cut_off_freq)
+
+      # print(xf[target_idx])
+
+      yf = rfft(data)
+      yf[:target_idx] = 0
+      new_sig = np.round(irfft(yf, len(data)),3)
+
+      # print(time[-1])
+      # print(len(datas))
+      # print(len(yf),yf)
+
+      if threshold[0] == 'below':
+        th = new_sig < threshold[1]
+      elif threshold[0] == 'over':
+        th = new_sig > threshold[1]
+      elif threshold[0] == 'auto':
+        th = new_sig
+            
+      threshold_edges = np.convolve([1, -1], th, mode='same')
+      thresholded_edge_indices = np.where(threshold_edges==1)[0]
+
+      filter_array = []
+      for idx, point in enumerate(thresholded_edge_indices):
+        if idx > 0:
+          if time[thresholded_edge_indices[idx]] - int(waveform[2]) >= time[thresholded_edge_indices[idx-1]]:
+            filter_array.append(True)
+          elif time[thresholded_edge_indices[idx]] - int(waveform[1]) >= time[thresholded_edge_indices[idx-1]]:
+            filter_array.append(True)
+          else:
+            filter_array.append(False)
+        else:
+          if time[thresholded_edge_indices[idx]] - int(waveform[1]) < 0:
+            filter_array.append(False)
+          else:
+            filter_array.append(True)
+      
+      timemark_list = thresholded_edge_indices[filter_array]
+
+      if ret_data_type == 'all':
+        print(' '.join(str(x) for x in time))
+        print(' '.join(str(x) for x in new_sig))
+        print(' '.join(str(x) for x in timemark_list))
+      elif ret_data_type == 'partial':
+        return_sub_signal_lists = {}
+        for timemark in timemark_list:
+          start_index = timemark - floor(int(waveform[1] / DELTA_TIME))
+          end_index = timemark + ceil(int(waveform[2] / DELTA_TIME))
+
+          subSignal = new_sig[start_index: end_index + 2]
+          return_sub_signal_lists[str(timemark)] = ' '.join(str(x) for x in subSignal)
+        print(dumps(return_sub_signal_lists))
+
+  conn.commit()
+  conn.close()
+  exit

src/controllers/file/download_functional.py

@@ -0,0 +1,142 @@
+import psycopg2
+import pandas as pd
+import numpy as np
+from os.path import exists
+import sys
+import os
+import time
+
+def log(df, channel):
+    # TODO: not sure need use 32 or 64? => 64, since large integral will cause overflow
+    df[f'{channel}_log'] = np.log10(np.absolute(df[channel]))
+    # df[f'{channel}_log'] = np.log10(np.absolute(df[channel].astype(np.int64)))
+    return df
+def integral(df, x_channel, y_channel, pre_last_x, pre_last_y, integral_result):
+    offset = df[x_channel]
+    offset = offset.shift(periods=1)
+    offset[0] = pre_last_x
+    x_diff = df[x_channel] - offset
+    # x_diff = df[x_channel].astype(np.int64) - offset.astype(np.int64)
+    # print('x_diff\n', x_diff)
+    offset = df[y_channel]
+    offset = offset.shift(periods=1)
+    offset[0] = pre_last_y
+    y_avg = (offset + df[y_channel]) / 2
+    # y_avg = (offset.astype(np.int64) + df[y_channel].astype(np.int64)) / 2
+    # print('y_avg:', y_avg)
+    # print('y_avg: ', y_avg)
+    local_integral = x_diff * y_avg
+    # TODO: if user don't need, then can remove it
+    df[f'{x_channel}_{y_channel}_integral_delta'] = local_integral
+    local_integral[0] += integral_result
+    df[f'{x_channel}_{y_channel}_integral'] = local_integral.cumsum()
+    # print(df)
+    pre_last_x = df[x_channel].iat[-1]
+    pre_last_y = df[y_channel].iat[-1]
+    integral_result = df[f'{x_channel}_{y_channel}_integral'].iat[-1]
+    # print('next run info: ', pre_last_x, pre_last_y, integral_result)
+    return df, pre_last_x, pre_last_y, integral_result
+def differential(df, x_channel, y_channel, pre_last_x, pre_last_y):
+    offset = df[x_channel]
+    offset = offset.shift(periods=1)
+    offset[0] = pre_last_x
+    x_diff = df[x_channel] - offset
+    # x_diff = df[x_channel].astype(np.int64) - offset.astype(np.int64)
+    offset = df[y_channel]
+    offset = offset.shift(periods=1)
+    offset[0] = pre_last_y
+    y_diff = df[y_channel] - offset
+    # y_diff = df[y_channel].astype(np.int64) - offset.astype(np.int64)
+    local_diff = y_diff / x_diff
+    # TODO: if user don't need, then can remove it
+    df[f'{x_channel}_{y_channel}_diff'] = local_diff
+    pre_last_x = df[x_channel].iat[-1]
+    pre_last_y = df[y_channel].iat[-1]
+    return df, pre_last_x, pre_last_y
+
+def download(id, mode, x_channel, y_channel):
+    # TODO: can change different chunck size
+    pages_chunck_size = 250
+    sql_total = 0
+    conn_start = time.time()
+    # TODO: need the check port id
+    conn = psycopg2.connect(database="postgres", user="biopro", password="BioProControlBox", host="127.0.0.1", port="54321")
+    print('conn time: ', time.time() - conn_start)
+    # conn = psycopg2.connect(database="postgres", user="biopro", password="BioProControlBox", host="127.0.0.1", port="5432")
+    cur = conn.cursor()
+    # recording_data_metas: meta info to get the raw_data table
+    sql_str = f'select "raw_data" from "recording_data_metas" WHERE id = {id}'
+    first_sql = time.time()
+    cur.execute(sql_str)
+    print('first sql time: ', time.time() - first_sql)
+    raw_data_list = None
+    try:
+        raw_data_list = cur.fetchall()[0][0]
+        channels = list(raw_data_list.keys())
+        df_all = pd.DataFrame()
+        # df = pd.DataFrame()
+        df_time = []
+        pre_last_x = 0
+        pre_last_y = 0
+        integral_result = 0
+        for raw_data_pages in range(len(raw_data_list[channels[0]])):                
+            df = pd.DataFrame()
+            for channel in channels:
+                sql_str = f'select "data" from "{channel}_recording_data_raws" WHERE id = {raw_data_list[channel][raw_data_pages]}'
+                sql_start = time.time()
+                cur.execute(sql_str)
+                sql_total += (time.time() - sql_start)
+                data_value = cur.fetchall()[0][0].replace('"***"', ' ')
+                data_value = data_value.split(' ')[:-1]
+                if df.empty:
+                    df_time = data_value[::2]
+                df[channel] = data_value
+            df = df.iloc[lambda x: x.index % 2 == 1].reset_index(drop=True)
+            df.insert(0, 'Time', df_time)
+            # transfer dataframe from string to number
+            cols = df.columns
+            df[cols] = df[cols].apply(pd.to_numeric, errors='coerce')
+            if mode == 'Log':
+                df = log(df, x_channel)
+            elif mode == 'Integral':
+                df, pre_last_x, pre_last_y, integral_result = integral(df, x_channel, y_channel, pre_last_x, pre_last_y, integral_result)
+            elif mode == 'Differential':
+                df, pre_last_x, pre_last_y = differential(df, x_channel, y_channel, pre_last_x, pre_last_y)
+            df_all = pd.concat([df_all, df], ignore_index=True, sort=False)
+            if ~raw_data_pages and (raw_data_pages % pages_chunck_size == 0 or raw_data_pages == len(raw_data_list[channels[0]]) - 1):
+                if not(exists(f"./src/csv/{id}.csv")):
+                    df.to_csv(f"./src/csv/{id}.csv", mode='a', index=False, header=True)
+                else:
+                    df.to_csv(f"./src/csv/{id}.csv", mode='a', index=False, header=False)
+                """ if not(exists(f"./{id}.csv")):
+                    df_all.to_csv(f"./{id}.csv", mode='a', index=False, header=True)
+                else:
+                    df_all.to_csv(f"./{id}.csv", mode='a', index=False, header=False) """
+                df_all = pd.DataFrame()
+        print('total sql: ', sql_total)
+    except BaseException as e:
+        print(e)
+        exit
+    return
+
+if __name__ == '__main__':
+    params = {}
+    for input in sys.argv[1:]: #Now we're going to iterate over argv[1:] (argv[0] is the program name)
+        param  = input.split("=") #Get what's left of the '='
+        params[param[0]] = param[1]
+
+    id = params['id']
+    mode = params['mode']
+    x_channel = params['x_channel']
+    y_channel = params['y_channel']
+    # print('download_functional init at main: ', id, mode, x_channel, y_channel)
+    start_time = time.time()
+    download(id, mode, x_channel, y_channel)
+    # download(408, '', 'Time', '0')
+    # download(408, '', 'Time', '0')
+    # download(405, 'Integral', 'Time', '0')
+    # download(405, 'Integral', 'Time', '0')
+    # download(408, 'Integral', 'Time', '0')
+    print('total: ', time.time() - start_time)
+    # download(1262, 'differential', '1', '0')
+    # 1262/differential/1/0

src/controllers/file/recording_data_meta.js

@@ -48,6 +48,16 @@ export const getByParent = async (ctx, next) => {
   next()
 }
 
+export const getAttrByParent = async (ctx, next) => {
+  const type = ctx.params.type
+  const parent = ctx.params.parent
+  const attr = ctx.params.attr
+  const result = await recordingDataMeta.getByAttrParent(type, parent, attr)
+  ctx.body = result
+
+  next()
+}
+
 export const getCountByParent = async (ctx, next) => {
   const type = ctx.params.type
   const parent = ctx.params.parent

src/controllers/file/recording_data_mini.js

@@ -61,6 +61,15 @@ export const getByID = async (ctx, next) => {
   next()
 }
 
+export const getExistOrNotByID = async (ctx, next) => {
+  const index = ctx.params.channel
+  const id = ctx.params.id
+  const result = await recordingDataMini.getExistOrNotByID(id, index)
+  ctx.body = result
+
+  next()
+}
+
 export const getByIDs = async (ctx, next) => {
   const index = ctx.params.channel
   const id = ctx.params.id

src/controllers/file/recording_data_raw.js

@@ -1,7 +1,12 @@
 import RecordingDataRaw from '../../models/file/recording_data_raw'
+import RecordingDataMeta from '../../models/file/recording_data_meta'
 import * as auth from '../auth'
+import childProcess from 'child_process'
+import path from 'path'
+import { createReadStream } from 'fs'
 
 const recordingDataRaw = new RecordingDataRaw()
+const recordingDataMeta = new RecordingDataMeta()
 
 export const create = async (ctx, next) => {
   const index = ctx.params.channel
@@ -25,6 +30,16 @@ export const update = async (ctx, next) => {
   next()
 }
 
+export const updateSdData = async (ctx, next) => {
+  const index = ctx.params.channel
+  const data = ctx.request.body
+  const id = ctx.params.id
+  const result = await recordingDataRaw.updateSdData(data, id, index)
+  ctx.body = result
+
+  next()
+}
+
 export const updateByIDs = async (ctx, next) => {
   const index = ctx.params.channel
   const data = ctx.request.body
@@ -152,3 +167,37 @@ export const getAll = async (ctx, next) => {
 
   next()
 }
+
+export const getCSV = async (ctx, next) => {
+  const id = ctx.params.id
+  const mode = ctx.params.mode
+  const x_channel = ctx.params.x_channel
+  const y_channel = ctx.params.y_channel
+  // console.log('getCSV: ', id, mode, x_channel, y_channel)
+  // const result = await recordingDataRaw.getCSV(id, mode, x_channel, y_channel)
+  const process = childProcess.spawnSync('python', [
+    path.join(__dirname, '/download_functional.py'),
+    'id=' + id,
+    'mode=' + mode,
+    'x_channel=' + x_channel,
+    'y_channel=' + y_channel,
+  ], { maxBuffer: 2 * 1024 * 1024 * 1024 })
+  // console.log('process: ', process)
+  // process.stdout.on('data', (data) => {
+  //   conosle.log('data', data)
+  // })
+  const result = await recordingDataMeta.getByID(id)
+  // console.log('result: ', result)
+  // console.log('result: ', result[0]['dataValues']['name'])
+  var file_name = id + '.csv'
+  // ctx.body = fs.stdout.toString()
+  // console.log('process.stdout.toString(): ', process.stdout.toString())
+  // console.log('process.stderr.toString(): ', process.stderr.toString())
+  ctx.type = 'stream'
+  ctx.attachment(result[0]['dataValues']['name']+'.csv')
+  ctx.body = createReadStream(path.resolve(__dirname, '../../csv', file_name))
+  // need to remove the csv file after download, since using 'append' for set header one time
+  const fs = require('fs')
+  fs.unlinkSync(path.resolve(__dirname, '../../csv', file_name))
+  next()
+}

src/controllers/file/test.txt

@@ -0,0 +1,60 @@
+          time       0        1        2  3  time_0_integral
+0            0  -73922  -836265  -848970  0     0.000000e+00
+1        10500  -84368  -834380  -848548  0    -8.310225e+08
+2        21000  -84389  -834380  -848126  0    -1.716997e+09
+3        31500  -84332  -835637  -847704  0    -2.602782e+09
+4        42500  -84166  -835637  -847283  0    -3.529521e+09
+...        ...     ...      ...      ... ..              ...
+1462  15390500  -45761  -449806  -466674  0    -9.716838e+11
+1463  15401000  -45833  -449806  -466445  0    -9.721646e+11
+1464  15411500  -45790  -451063  -466216  0    -9.726457e+11
+1465  15422500  -45638  -449806  -465988  0    -9.731485e+11
+1466  15432500  -45674  -449806  -465759  0    -9.736051e+11
+
+[1467 rows x 6 columns]
+next run info:  15432500 -45674 -973605066500.0
+          time       0        1        2  3  time_0_integral
+0     15443000  -45689  -448549  -465531  0    -9.740847e+11
+1     15453500  -45689  -448549  -465531  0    -9.745645e+11
+2     15464000  -45631  -449178  -465303  0    -9.750439e+11
+3     15474500  -45581  -447921  -465075  0    -9.755227e+11
+4     15485500  -45646  -447921  -464847  0    -9.760245e+11
+...        ...     ...      ...      ... ..              ...
+1443  30720000  -24971  -248122  -259749  0    -1.497382e+12
+1444  30730500  -24920  -247950  -259624  0    -1.497644e+12
+1445  30741000  -24920  -248381  -259624  0    -1.497905e+12
+1446  30751500  -24791  -248036  -259500  0    -1.498166e+12
+1447  30762000  -24856  -247346  -259376  0    -1.498427e+12
+
+[1448 rows x 6 columns]
+next run info:  30762000 -24856 -1498426872750.0
+          time       0        1        2  3  time_0_integral
+0     30772500  -24913  -247669  -259251  0    -1.498688e+12
+1     30783000  -24848  -247669  -259127  0    -1.498949e+12
+2     30794000  -24805  -247669  -259003  0    -1.499222e+12
+3     30804000  -24805  -247454  -259003  0    -1.499471e+12
+4     30814500  -24870  -247238  -258879  0    -1.499731e+12
+...        ...     ...      ...      ... ..              ...
+1456  46091500  -13496  -134943  -147002  0    -1.783935e+12
+1457  46102000  -13510  -134921  -146934  0    -1.784077e+12
+1458  46112500  -13510  -134123  -146934  0    -1.784219e+12
+1459  46123000  -13597  -134339  -146866  0    -1.784361e+12
+1460  46134000  -13525  -134598  -146799  0    -1.784510e+12
+
+[1461 rows x 6 columns]
+next run info:  46134000 -13525 -1784510350500.0
+         time       0        1        2  3  time_0_integral
+0    46144500  -13366  -134210  -146732  0    -1.784652e+12
+1    46154500  -13460  -134210  -146665  0    -1.784786e+12
+2    46165500  -13503  -134016  -146597  0    -1.784934e+12
+3    46176000  -13503  -134102  -146597  0    -1.785076e+12
+4    46186500  -13431  -134167  -146530  0    -1.785217e+12
+..        ...     ...      ...      ... ..              ...
+583  52277500  -10487  -105193  -117883  0    -1.858083e+12
+584  52288000  -10573  -105042  -117830  0    -1.858194e+12
+585  52298500  -10595  -105106  -117778  0    -1.858305e+12
+586  52309000  -10494  -105085  -117725  0    -1.858415e+12
+587  52319500  -10523  -105085  -117672  0    -1.858526e+12
+
+[588 rows x 6 columns]
+next run info:  52319500 -10523 -1858525771000.0

src/controllers/index.js

@@ -8,6 +8,8 @@ import * as task from './controller/task'
 import * as recordingDataMeta from './file/recording_data_meta'
 import * as recordingDataRaw from './file/recording_data_raw'
 import * as recordingDataMini from './file/recording_data_mini'
+import * as analysis from './analysis'
+import * as project from './project/project'
 
 export default {
   upload,
@@ -19,5 +21,7 @@ export default {
   task,
   recordingDataMeta,
   recordingDataRaw,
-  recordingDataMini
+  recordingDataMini,
+  analysis,
+  project
 }

src/controllers/project/project.js

@@ -0,0 +1,62 @@
+import ProjectModal from '../../models/project/project'
+
+const project = new ProjectModal()
+
+export const create = async (ctx, next) => {
+  const data = ctx.request.body
+  console.log('create', data)
+  const result = await project.create(data)
+  ctx.body = result
+
+  next()
+}
+
+export const update = async (ctx, next) => {
+  const data = ctx.request.body
+  const id = ctx.params.id
+  const result = await project.update(data, id)
+  ctx.body = result
+
+  next()
+}
+
+export const updateByAttr = async (ctx, next) => {
+  const attr = ctx.params.attr
+  const value = ctx.params.value
+  const result = await project.updateByAttr(attr, value)
+  ctx.body = result
+
+  next()
+}
+
+export const clearDeleted = async (ctx, next) => {
+  const result = await project.clearDeleted()
+  ctx.body = result
+
+  next()
+}
+
+export const getByID = async (ctx, next) => {
+  const index = ctx.params.channel
+  const id = ctx.params.id
+  const result = await project.getByID(id, index)
+  ctx.body = result
+
+  next()
+}
+
+export const getByAttr = async (ctx, next) => {
+  const attr = ctx.params.attr
+  const value = ctx.params.value
+  const result = await project.getByAttr(attr, value)
+  ctx.body = result
+
+  next()
+}
+
+export const getAll = async (ctx, next) => {
+  const result = await project.getAll()
+  ctx.body = result
+
+  next()
+}

src/db/database.js

@@ -27,6 +27,7 @@ db.controllers = require('./schema/controller.model')(sequelize, Sequelize)
 db.tasks = require('./schema/task.model')(sequelize, Sequelize)
 db.devices = require('./schema/device.model')(sequelize, Sequelize)
 db.collections = require('./schema/collection.model')(sequelize, Sequelize)
+db.projects = require('./schema/project.model')(sequelize, Sequelize)
 db.recording_data_metas = require('./schema/recording_data_meta.model')(sequelize, Sequelize)
 for (let i = 0; i < 32; i++) {
   db[i + '_recording_data_raws'] = require('./schema/recording_data_raw.model')(sequelize, Sequelize, i)
@@ -34,12 +35,12 @@ for (let i = 0; i < 32; i++) {
 for (let i = 0; i < 32; i++) {
   db[i + '_recording_data_minis'] = require('./schema/recording_data_mini.model')(sequelize, Sequelize, i)
 }
-for (let i = 256; i < 288; i++) {
-  db[i + '_recording_data_raws'] = require('./schema/recording_data_raw.model')(sequelize, Sequelize, i)
-}
-for (let i = 256; i < 288; i++) {
-  db[i + '_recording_data_minis'] = require('./schema/recording_data_mini.model')(sequelize, Sequelize, i)
-}
+// for (let i = 256; i < 288; i++) {
+//   db[i + '_recording_data_raws'] = require('./schema/recording_data_raw.model')(sequelize, Sequelize, i)
+// }
+// for (let i = 256; i < 288; i++) {
+//   db[i + '_recording_data_minis'] = require('./schema/recording_data_mini.model')(sequelize, Sequelize, i)
+// }
 
 db.sequelize.sync()
 

src/db/schema/project.model.js

@@ -0,0 +1,47 @@
+module.exports = (sequelize, Sequelize) => {
+  const Project = sequelize.define('project', {
+    name: {
+      type: Sequelize.STRING
+    },
+    desc: {
+      type: Sequelize.STRING
+    },
+    task: {
+      type: Sequelize.JSONB,
+      defaultValue: {}
+    },
+    device: {
+      type: Sequelize.JSONB,
+      defaultValue: {}
+    },
+    uuid: {
+      type: Sequelize.STRING,
+      defaultValue: ''
+    },
+    user_auth: {
+      type: Sequelize.JSONB,
+      defaultValue: {
+        owner: [],
+        maintainer: [],
+        guest: []
+      }
+    },
+    deleted: {
+      type: Sequelize.BOOLEAN,
+      defaultValue: false
+    },
+    created_at: {
+      type: Sequelize.DATE,
+      defaultValue: Sequelize.literal('CURRENT_TIMESTAMP')
+    },
+    updated_at: {
+      type: Sequelize.DATE,
+      defaultValue: Sequelize.literal('CURRENT_TIMESTAMP')
+    }
+  },
+  {
+    timestamps: false
+  })
+
+  return Project
+}

src/models/file/recording_data_meta.js

@@ -62,9 +62,9 @@ class RecordingDataMeta {
           recordingDataRaw.clearDeleted(channel)
         }
         if (meta.mini_data[channel] != null) {
-          await recordingDataMini.updateByIDs({ deleted: true }, meta.mini_data[channel]['10'], channel)
-          await recordingDataMini.updateByIDs({ deleted: true }, meta.mini_data[channel]['100'], channel)
-          await recordingDataMini.updateByIDs({ deleted: true }, meta.mini_data[channel]['100'], channel)
+          for (const miniID in meta.mini_data[channel]) {
+            await recordingDataMini.updateByIDs({ deleted: true }, meta.mini_data[channel][miniID], channel)
+          }
           recordingDataMini.clearDeleted(channel)
         }
       }
@@ -98,7 +98,28 @@ class RecordingDataMeta {
     return ret
   }
 
-  async getCountByParent (type, parent) {
+  async getByAttrParent(type, parent, attr) {
+    const attrList = attr.split('-')
+    const collectionType = type + '::jsonb'
+    const parentOp = {}
+    parentOp[collectionType] = {
+      [Op.contains]: '[' + parent + ']'
+    }
+    const ret = await db.recording_data_metas.findAll(
+      {
+        where: {
+          parent: parentOp
+        },
+        attributes: attrList,
+        order: [
+          ['id', 'DESC']
+        ],
+      }
+    )
+    return ret
+  }
+
+  async getCountByParent(type, parent) {
     const collectionType = type + '::jsonb'
     const parentOp = {}
     parentOp[collectionType] = {

src/models/file/recording_data_mini.js

@@ -31,11 +31,11 @@ class RecordingDataMini {
     return ret
   }
 
-  async clearDeleted (index) {
+  async clearDeleted (index, where = { deleted: true }) {
     const ret = await db[index + '_recording_data_minis'].destroy(
       {
         where: {
-          deleted: true
+          ...where
         }
       }
     )
@@ -69,6 +69,17 @@ class RecordingDataMini {
     return ret
   }
 
+  async getExistOrNotByID (id, index) {
+    const ret = await db[index + '_recording_data_minis'].findOne(
+      {
+        where: {
+          id: id
+        }
+      }
+    ).then(token => !(token.data_mean === ''))
+    return ret
+  }
+
   async getByIDs (id, index) {
     const _id = JSON.parse('[' + id + ']')
     const ret = await db[index + '_recording_data_minis'].findAllWithStream(

src/models/file/recording_data_raw.js

@@ -20,6 +20,11 @@ class RecordingDataRaw {
     return ret
   }
 
+  async updateSdData (req, id, index) {
+    const ret = await db.sequelize.query(`UPDATE "public"."${index}_recording_data_raws" SET sd_data = sd_data || '${req.data}' WHERE id = ${String(id)}`)
+    return ret
+  }
+
   async updateByIDs (req, id, index) {
     const ret = await db[index + '_recording_data_raws'].update(
       req,
@@ -32,11 +37,11 @@ class RecordingDataRaw {
     return ret
   }
 
-  async clearDeleted (index) {
+  async clearDeleted (index, where = { deleted: true }) {
     const ret = await db[index + '_recording_data_raws'].destroy(
       {
         where: {
-          deleted: true
+          ...where
         }
       }
     )

src/models/project/project.js

@@ -0,0 +1,97 @@
+const db = require('../../db/database')
+
+// const Op = db.Sequelize.Op
+
+class ProjectModal {
+  async create (req) {
+    return db.projects.create(req)
+  }
+
+  async update (req, id) {
+    if (id != null) {
+      const ret = await db.projects.update(
+        req,
+        {
+          where: {
+            id: id
+          }
+        }
+      )
+      return ret
+    } else {
+      const ret = await db.projects.update(
+        req,
+        {
+          where: {}
+        }
+      )
+      return ret
+    }
+  }
+
+  async updateByAttr (req, attr, value) {
+    const whereObj = {}
+    const attrList = attr.split('-')
+    const valueList = value.split('-')
+    attrList.forEach((key, idx) => {
+      whereObj[key] = valueList[idx]
+    })
+
+    const ret = await db.projects.update(
+      req,
+      {
+        where: whereObj
+      }
+    )
+    return ret
+  }
+
+  async clearDeleted () {
+    const ret = await db.projects.destroy(
+      {
+        where: {
+          deleted: true
+        }
+      }
+    )
+    return ret
+  }
+
+  async getByID (id) {
+    const ret = await db.projects.findAll(
+      {
+        where: {
+          id: id
+        }
+      }
+    )
+    return ret
+  }
+
+  async getByAttr (attr, value) {
+    const attrList = attr.split('-')
+    const valueList = value.split('-')
+    const whereObj = {}
+    attrList.forEach((key, idx) => {
+      whereObj[key] = valueList[idx]
+    })
+
+    const ret = await db.projects.findAll(
+      {
+        where: whereObj
+      }
+    )
+    return ret
+  }
+
+  async getAll () {
+    const ret = await db.projects.findAll({
+      order: [
+        ['created_at', 'ASC']
+      ]
+    })
+    return ret
+  }
+}
+
+export default ProjectModal

src/routes/main-routes.js

@@ -39,6 +39,7 @@ export default router
   .get('/api/file/meta/get_by_id/:id', controllers.recordingDataMeta.getByID)
   .get('/api/file/meta/get_by_path/:path', controllers.recordingDataMeta.getByPath)
   .get('/api/file/meta/get_by_parent/:type/:parent', controllers.recordingDataMeta.getByParent)
+  .get('/api/file/meta/get_attr_by_parent/:type/:parent/:attr', controllers.recordingDataMeta.getAttrByParent)
   .get('/api/file/meta/get_count_by_parent/:type/:parent', controllers.recordingDataMeta.getCountByParent)
   .get('/api/file/meta/get_by_parent_with_limit/:type/:parent/:limit/:offset/:order', controllers.recordingDataMeta.getByParentWithLimit)
   .get('/api/file/meta/get_by_attr_parent_with_limit/:type/:parent/:limit/:offset/:order/:attr', controllers.recordingDataMeta.getByAttrsParentWithLimit)
@@ -49,6 +50,7 @@ export default router
   // raw
   .post('/api/file/raw/create/:channel', controllers.recordingDataRaw.create)
   .post('/api/file/raw/update/:channel/:id', controllers.recordingDataRaw.update)
+  .post('/api/file/raw/update_sd_data/:channel/:id', controllers.recordingDataRaw.updateSdData)
   .get('/api/file/raw/clear_deleted/:channel/:id', controllers.recordingDataRaw.clearDeleted)
   .get('/api/file/raw/get_by_id/:channel/:id', controllers.recordingDataRaw.getByID)
   .get('/api/file/raw/get_by_ids/:channel/:id', controllers.recordingDataRaw.getByIDs)
@@ -57,12 +59,14 @@ export default router
   .get('/api/file/raw/get_attr_by_id/:channel/:id/:attr', controllers.recordingDataRaw.getAttrByID)
   .get('/api/file/raw/get_attr_by_ids/:channel/:id/:attr', controllers.recordingDataRaw.getAttrByIDs)
   .get('/api/file/raw/get_attr_by_parent/:channel/:parent/:attr', controllers.recordingDataRaw.getAttrByParent)
+  .get('/api/file/raw/get_csv/:id/:mode/:x_channel/:y_channel', controllers.recordingDataRaw.getCSV)
 
   // mini
   .post('/api/file/mini/create/:channel', controllers.recordingDataMini.create)
   .post('/api/file/mini/update/:channel/:id', controllers.recordingDataMini.update)
   .get('/api/file/mini/clear_deleted/:channel/:id', controllers.recordingDataMini.clearDeleted)
   .get('/api/file/mini/get_by_id/:channel/:id', controllers.recordingDataMini.getByID)
+  .get('/api/file/mini/get_exist_or_not_by_id/:channel/:id', controllers.recordingDataMini.getExistOrNotByID)
   .get('/api/file/mini/get_by_parent/:channel/:parent', controllers.recordingDataMini.getByParent)
   .get('/api/file/mini/get_attr_by_id/:channel/:id/:attr', controllers.recordingDataMini.getAttrByID)
   .get('/api/file/mini/get_attr_by_parent/:channel/:parent/:attr', controllers.recordingDataMini.getAttrByParent)
@@ -71,6 +75,7 @@ export default router
 
   // device
   .post('/api/device/create', controllers.device.create)
+  .post('/api/device/update/:id', controllers.device.update)
   .post('/api/device/update/all', controllers.device.update)
   .post('/api/device/update_by_id/:id', controllers.device.updateByID)
   .post('/api/device/update_by_mac/:mac', controllers.device.updateByMac)
@@ -106,3 +111,15 @@ export default router
 
   .post('/api/task/update', controllers.task.update)
   .post('/api/task/update_by_id/:id', controllers.task.updateByID)
+  // analyze
+  .post('/api/analysis/spike_detect', controllers.analysis.spikeDetect)
+
+  // project
+  .post('/api/project/create', controllers.project.create)
+  .post('/api/project/update/:id', controllers.project.update)
+  .post('/api/project/update_by_attr/:attr/:value', controllers.project.updateByAttr)
+  .post('/api/project/update/all', controllers.project.update)
+  .get('/api/project/clear_deleted/:controller_id', controllers.project.clearDeleted)
+  .get('/api/project/get_by_id/:id', controllers.project.getByID)
+  .get('/api/project/get_by_attr/:attr/:value', controllers.project.getByAttr)
+  .get('/api/project/get/all', controllers.project.getAll)

ssh_script.sh

@@ -0,0 +1,3 @@
+# Elite: 53
+# Neulive: 101 or 95
+ssh -NL 54321:localhost:5432 pi@192.168.2.1