Restructure 2D simulation pipeline to support isolated subdirectory-based device management and output directory relocation

make_scripts.py

@@ -28,7 +28,7 @@ recon_logic = """
         if v_current >= next_recon_v:
             state_data = save_state(device)
             seed_data = {"voltage": v_current, "step_size": step_size, "state": state_data}
-            seed_filename = f"seed_{int(next_recon_v)}V.pkl"
+            seed_filename = f"{OUT_DIR}seed_{int(next_recon_v)}V.pkl"
             with open(seed_filename, "wb") as f:
                 pickle.dump(seed_data, f)
             print(f"\\n--- RECON PROBE at {v_current:.2f} V ---")
@@ -58,15 +58,15 @@ recon_logic = """
                     ia_p_p12 = devsim.get_contact_current(device=device, contact="MT1_P12_Si", equation="HoleContinuityEquation")
                     av_curr = ia_n_si + ia_p_si + ia_n_p12 + ia_p_p12
                     print(f"Avalanche Current at {v_current:.2f} V: {av_curr:.4e} A")
-                    with open("recon_avalanche.log", "a") as f:
+                    with open(f"{OUT_DIR}recon_avalanche.log", "a") as f:
                         f.write(f"{v_current:.2f}\\t{av_curr:.4e}\\n")
                 else:
                     print("Avalanche failed to converge.")
-                    with open("recon_avalanche.log", "a") as f:
+                    with open(f"{OUT_DIR}recon_avalanche.log", "a") as f:
                         f.write(f"{v_current:.2f}\\tFAILED\\n")
             except devsim.error:
                 print("Avalanche failed to converge.")
-                with open("recon_avalanche.log", "a") as f:
+                with open(f"{OUT_DIR}recon_avalanche.log", "a") as f:
                     f.write(f"{v_current:.2f}\\tFAILED\\n")
             
             # Restore state and Turn OFF Avalanche
@@ -90,7 +90,7 @@ current_list = [0.0]
 
 # Recon variables
 next_recon_v = 50.0
-with open("recon_avalanche.log", "w") as f:
+with open(f"{OUT_DIR}recon_avalanche.log", "w") as f:
     f.write("Voltage(V)\\tAvalancheCurrent(A)\\n")
 """