10
1686 lines
61 KiB
Python
1686 lines
61 KiB
Python
import abc
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import struct
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import math
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import numpy
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from typing import Optional, TypeVar, Generic, Tuple, Dict, List, AnyStr
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from datetime import datetime
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from biopro.recording import RecordingData, RecordingFileDataFormat
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# from biopro.util.console import hex_line
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T = TypeVar('T')
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class EODInterrupt(RuntimeError):
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"""End of Data interrupt.
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"""
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__slots__ = ()
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class DataDecodeFormat(Generic[T], metaclass=abc.ABCMeta):
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"""data decoder.
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do not share this instance between data decoding handle, except you make sure it is safe.
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"""
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__slots__ = ()
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@property
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@abc.abstractmethod
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def name(self) -> AnyStr:
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"""decoder name
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make sure that decoder and ``DataDecodeFormat.parse(decoder.name)`` are
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functional equally.
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:return: decoder name.
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"""
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pass
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@property
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@abc.abstractmethod
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def format(self) -> bytes:
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"""recording meta file format
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:return:
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"""
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pass
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def message(self) -> Optional[str]:
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"""send message to front-end to indicate that data has changed something.
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:return: message content
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"""
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return None
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@abc.abstractmethod
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def decode(self, data: bytes) -> Optional[T]:
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"""
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:param data: raw data
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:return: decoded data
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"""
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pass
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@classmethod
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def parse(cls, expr: AnyStr) -> 'DataDecodeFormat':
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if expr == NulDataDecoder.NAME:
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return NulDataDecoder.INSTANCE
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elif expr == RawDataDecoder.NAME:
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return RawDataDecoder.INSTANCE
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elif expr == TC4VAF2DataDecoder.NAME:
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return TC4VAF2DataDecoder()
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elif expr == TDC4VAF2DataDecoder.NAME:
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return TDC4VAF2DataDecoder()
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elif expr == TDC4VCDataDecoder.NAME:
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return TDC4VCDataDecoder()
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elif expr == I4V4Z4T4DataDecoder.NAME:
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return I4V4Z4T4DataDecoder()
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elif isinstance(expr, str):
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raise RuntimeError('current not support custom data decode format : ' + expr)
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elif isinstance(expr, bytes):
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if expr.startswith(b'TDC4VAF2:'):
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return TDC4VAF2DataDecoder(expr[9:])
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elif expr.startswith(b'TDC4VC:'):
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return TDC4VCDataDecoder(expr[7:])
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elif expr.startswith(b'NeuliveThreeOne:'):
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return NeuliveThreeOneDataDecoder(expr[16:])
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elif expr.startswith(b'EISZeroOne:'):
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return EISZeroOneDataDecoder(expr[11:])
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raise RuntimeError('current not support custom data decode format : ' + str(expr))
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def __str__(self):
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return self.__class__.__name__
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__repr__ = __str__
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class NulDataDecoder(DataDecodeFormat[None]):
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"""drop all data, decode always return None."""
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NAME = 'NUL'
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__slots__ = ()
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@property
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def name(self) -> str:
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return self.NAME
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@property
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def format(self) -> bytes:
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return RecordingFileDataFormat.RAW_DATA
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def decode(self, data: bytes) -> None:
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"""
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:param data: raw data
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:return: always None
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"""
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return None
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NulDataDecoder.INSTANCE = NulDataDecoder()
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class RawDataDecoder(DataDecodeFormat[bytes]):
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NAME = 'RAW'
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__slots__ = ()
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@property
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def name(self) -> str:
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return self.NAME
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@property
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def format(self) -> bytes:
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return RecordingFileDataFormat.RAW_DATA
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def decode(self, data: bytes) -> bytes:
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"""
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:param data: raw data
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:return: *data*
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"""
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return data
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RawDataDecoder.INSTANCE = RawDataDecoder()
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class Timer:
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OVERFLOW = (int)(0xFFFF_FFFF / 31) # CC2650 device overflow value
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__slots__ = '_start_time', '_prev_time', '_overflow', '_sum_timestamp', '_prev_prev_time'
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def __init__(self):
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self._start_time: Dict[int, float] = {}
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self._prev_time: Dict[int, float] = {}
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self._overflow: Dict[int, float] = {}
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self._prev_prev_time: Dict[int, float] = {}
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for dev_num in range(8):
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self._start_time[dev_num] = None
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def eis_get_time_stamp(self, device: int, time_stamp: float) -> Tuple[Optional[float], Optional[float]]:
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if self._start_time[device] is None:
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self._start_time[device] = time_stamp
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self._prev_time[device] = time_stamp
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self._prev_prev_time[device] = time_stamp
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self._overflow[device] = 0
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return 0, 0, False
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prev_time = self._prev_time.get(device, None)
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prev_prev_time = self._prev_prev_time.get(device, None)
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overflow = self._overflow.get(device, 0)
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start_time = self._start_time[device]
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if prev_time is None:
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self._prev_time[device] = time_stamp
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self._overflow[device] = 0
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ret = time_stamp - start_time
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print("ignore prev_time is None; ", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return ret, 0, False
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# data duplicate
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elif time_stamp == prev_time:
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print("ignore time_stamp == prev_time; ", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return None, None, True
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# if (time_stamp > self.OVERFLOW - 1200) or (time_stamp < 0x0000_0050):
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# print("right time [time:", time_stamp, ", prev_time:", prev_time, ']', datetime.now())
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# time stamp overflow
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if time_stamp < 0x0100_0000 and 0x0800_0000 < prev_time:
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overflow += 1
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self._overflow[device] = overflow
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self._prev_time[device] = time_stamp
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delta = time_stamp + (self.OVERFLOW + 1) - prev_time
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ret = (self.OVERFLOW + 1) * overflow + time_stamp - start_time
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print("time stamp overflow;", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, "; delta:", delta, ",", datetime.now())
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print("overflow:", overflow, "; device:", device)
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return ret, delta, False
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# ignore negative delta
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elif time_stamp < prev_time and time_stamp != 0:
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print("ignore negative delta; ", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return None, None, True
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# # ignore big jump, if delta t > 30s, ignore
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# elif time_stamp > prev_time and (time_stamp - prev_time > 60000) and prev_time != 0:
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# print("ignore big jump;", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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# return None, None, True
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else:
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delta = time_stamp - prev_time
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self._prev_time[device] = time_stamp
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overflow = self._overflow[device]
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ret = time_stamp + (self.OVERFLOW + 1) * overflow - start_time
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self._prev_prev_time[device] = prev_time
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return ret, delta, False
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def get_time_stamp(self, device: int, time_stamp: float) -> Tuple[Optional[float], Optional[float]]:
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if self._start_time[device] is None:
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self._start_time[device] = time_stamp
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self._prev_time[device] = time_stamp
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self._prev_prev_time[device] = time_stamp
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self._overflow[device] = 0
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return 0, 0, False
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prev_time = self._prev_time.get(device, None)
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prev_prev_time = self._prev_prev_time.get(device, None)
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overflow = self._overflow.get(device, 0)
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start_time = self._start_time[device]
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if prev_time is None:
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self._prev_time[device] = time_stamp
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self._overflow[device] = 0
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ret = time_stamp - start_time
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print("ignore prev_time is None; ", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return ret, 0, False
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# data duplicate
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elif time_stamp == prev_time:
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print("ignore time_stamp == prev_time; ", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return None, None, True
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# if (time_stamp > self.OVERFLOW - 1200) or (time_stamp < 0x0000_0050):
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# print("right time [time:", time_stamp, ", prev_time:", prev_time, ']', datetime.now())
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# time stamp overflow
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if time_stamp < 0x0100_0000 and 0x0800_0000 < prev_time:
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overflow += 1
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self._overflow[device] = overflow
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self._prev_time[device] = time_stamp
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delta = time_stamp + (self.OVERFLOW + 1) - prev_time
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ret = (self.OVERFLOW + 1) * overflow + time_stamp - start_time
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print("time stamp overflow;", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, "; delta:", delta, ",", datetime.now())
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print("overflow:", overflow, "; device:", device)
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return ret, delta, False
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# ignore negative delta
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elif time_stamp < prev_time and time_stamp != 0:
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print("ignore negative delta; ", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return None, None, True
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# ignore big jump, if delta t > 30s, ignore
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elif time_stamp > prev_time and (time_stamp - prev_time > 60000) and prev_time != 0:
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print("ignore big jump;", "time:", time_stamp, "; prev_time:", prev_time, "; prev_prev_time:", prev_prev_time, ",", datetime.now())
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return None, None, True
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else:
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delta = time_stamp - prev_time
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self._prev_time[device] = time_stamp
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overflow = self._overflow[device]
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ret = time_stamp + (self.OVERFLOW + 1) * overflow - start_time
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self._prev_prev_time[device] = prev_time
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return ret, delta, False
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class RecDataDecoder(DataDecodeFormat[RecordingData], metaclass=abc.ABCMeta):
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OVERFLOW = 0xFFFF_FFFF
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__slots__ = '_device', 'timer'
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def __init__(self):
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self._device: int = 0
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self.timer = Timer()
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@property
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def device(self) -> int:
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return self._device
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@device.setter
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def device(self, value: int):
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if not (0 <= value):
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raise ValueError('illegal device value : ' + str(value))
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self._device = value
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@property
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def format(self) -> bytes:
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return RecordingFileDataFormat.REC_DATA
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def get_time_stamp(self, time_stamp: float) -> Tuple[Optional[float], Optional[float]]:
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return self.timer.get_time_stamp(self.device, time_stamp)
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def eis_get_time_stamp(self, time_stamp: float) -> Tuple[Optional[float], Optional[float]]:
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return self.timer.eis_get_time_stamp(self.device, time_stamp)
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@abc.abstractmethod
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def decode(self, data: bytes) -> Optional[RecordingData]:
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pass
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class TC4VAF2DataDecoder(RecDataDecoder):
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"""
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::
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| | 1 | 2 | 3 |
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0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2
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-----------------------------------------------------------------
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| header | length |
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| timestamp |
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| data [0] | data[1] |
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| ............................ | data[N] |
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*data*
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::
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| | 1 |
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0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6
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---------------------------------
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|channel| value | F |
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"""
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NAME = 'TC4VAF2'
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__slots__ = ('_prev_data',)
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def __init__(self):
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super().__init__()
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self._prev_data: Optional[bytes] = None
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@property
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def name(self) -> str:
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return self.NAME
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def decode(self, data: bytes) -> Optional[RecordingData]:
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if len(data) < 6:
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return None
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# hex_line(data)
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data_length = int(data[1])
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if data_length == 0:
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return None
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time_stamp: float = struct.unpack('<I', data[2:6])[0] # unit: 1/32ms
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time_stamp, delta, ret_get_time_stamp = self.get_time_stamp(time_stamp)
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if time_stamp is None:
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return None
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if time_stamp == 0:
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self._prev_data = data
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return None
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prev_data = self._prev_data
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self._prev_data = data
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assert prev_data is not None
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time_stamp /= 32 # unit: ms
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data_length = int(prev_data[1])
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sample_rate = 1000 * ((data_length - 4) / 2) / delta
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ret = RecordingData(self.device, int(time_stamp), int(sample_rate))
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for i in range(6, data_length + 2, 2):
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d1 = data[i]
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d2 = data[i + 1]
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channel = (d1 & 0xF0) >> 4
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value = ((d1 & 0x0F) << 6) | ((d2 & 0xFC) >> 2)
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flag = d2 & 0b0011
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if flag == 0:
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ret.append_data(channel, value - 512)
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else:
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ret.append_data(channel, None)
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return ret
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class TDC4VAF2DataDecoder(RecDataDecoder):
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"""
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data format
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-----------
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::
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| | 1 | 2 | 3 |
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0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2
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-----------------------------------------------------------------
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| header | length = N |
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| timestamp |
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| time delta |
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| data [0] | data[1] |
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| ............................ | data[N] |
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*data*
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::
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| | 1 |
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0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6
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---------------------------------
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|channel| value | F |
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cali coeff table format
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-----------------------
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TODO cali coeff table format
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::
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| | 1 | 2 | 3 | 4 | 5 | 6 |
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01234567890123456789012345678901234567890123456789012345678901234
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-----------------------------------------------------------------
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| | c0 g0 amp | c0 g1 amp | c0 g2..
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.. amp | | c0 g0 off | c0 g1..
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.. off | c0 g2 off | | c1 g0..
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| ............................................................. |
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| cN g0 amp | cN g1 amp | cN g2 amp |.. (4 bytes) ..|
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| cN g0 off | cN g1 off | cN g2 off |.. (4 bytes) ..|
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"""
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NAME = 'TDC4VAF2'
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AMP_GAIN = (35, 75, 325)
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__slots__ = 'amp_gain', 'data_counter', 'cali_coeff', '_cali_coeff'
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def __init__(self, cali_coeff: bytes = None):
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super().__init__()
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self.amp_gain: int = 0
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self.data_counter: int = 0
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self._cali_coeff: Optional[bytes] = None
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self.cali_coeff: Optional[List[Tuple[int, int]]] = None
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if cali_coeff is not None:
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self._cali_coeff = cali_coeff
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self.cali_coeff = self._decode_cali_coeff(cali_coeff)
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@staticmethod
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def _decode_cali_coeff(self, cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
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if cali_coeff != b'':
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cali_table = []
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for i in range(0, 12): # foreach channel
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for j in range(20 * i + 3, 20 * i + 9, 2):
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amp = struct.unpack('>h', cali_coeff[j:j + 2])[0]
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offset = struct.unpack('>h', cali_coeff[j + 10:j + 12])[0]
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cali_table.append((amp, offset))
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return cali_table
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else:
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return None
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@property
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def name(self) -> AnyStr:
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if self._cali_coeff is None:
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return self.NAME
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else:
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return self.NAME.encode() + b':' + self._cali_coeff
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def decode(self, data: bytes) -> Optional[RecordingData]:
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"""
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data_counter is used for excluding data which were send from the beginning ( < 15 )with the wrong timestamp,
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and these data will cause error while recording.
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"""
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if self.data_counter < 15:
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self.data_counter += 1
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else:
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if len(data) < 8:
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return None
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|
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# print(hex_line(data))
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data_length = int(data[1])
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if data_length == 0:
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return None
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time_stamp: float = struct.unpack('<I', data[2:6])[0] # unit: 1/32K sec, 1/32 ms
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time_delta: float = struct.unpack('<H', data[6:8])[0] # unit: as above
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time_stamp, _, ret_get_time_stamp = self.get_time_stamp(time_stamp)
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if time_stamp is None:
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return None
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if data_length == 1 or int(time_delta) == 0:
|
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sample_rate = 0
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else:
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# recalculate sample rate
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sample_rate = 32769 * (data_length - 1) / time_delta # unit 1/s
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|
|
ret = RecordingData(self.device, time_stamp / 32.769, int(sample_rate))
|
|
|
|
amp_gain = self.AMP_GAIN.index(self.amp_gain)
|
|
stop = len(data)
|
|
|
|
for i in range(data_length):
|
|
# avoid index out of range
|
|
offset = 8 + 2 * i
|
|
if offset + 1 < stop:
|
|
d1 = data[offset]
|
|
d2 = data[offset + 1]
|
|
|
|
channel = (d1 & 0xF0) >> 4
|
|
value = ((d1 & 0x0F) << 6) | ((d2 & 0xFC) >> 2)
|
|
flag = d2 & 0b0011
|
|
|
|
if flag != 0:
|
|
ret.append_data(channel, None)
|
|
|
|
else:
|
|
if channel < 12 and self.cali_coeff is not None:
|
|
gain, offset = self.cali_coeff[channel * 3 + amp_gain]
|
|
gain /= 2
|
|
|
|
if gain == 0:
|
|
cali_value = value - 512
|
|
else:
|
|
cali_value = int(1000 * ((value - 512 - offset) / gain))
|
|
else:
|
|
cali_value = value - 512
|
|
|
|
ret.append_data(channel, cali_value)
|
|
|
|
return ret
|
|
|
|
|
|
class TDC4VCDataDecoder(RecDataDecoder):
|
|
"""
|
|
::
|
|
|
|
| | 1 | 2 | 3 |
|
|
0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2
|
|
-----------------------------------------------------------------
|
|
| header | length = N |
|
|
| timestamp |
|
|
| data [0] | data[1] |
|
|
| ............................ | data[15] |
|
|
*data*
|
|
|
|
::
|
|
|
|
| | 1 |
|
|
0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6
|
|
---------------------------------
|
|
|channel| value | F |
|
|
|
|
|
|
|
|
"""
|
|
|
|
NAME = 'TDC4VC'
|
|
|
|
AMP_GAIN = (100, 400, 800, 25)
|
|
CH_NUMBER = 8
|
|
GAIN_LEVEL_NUMBER = 4
|
|
|
|
__slots__ = "_start_return_data", "_time_stamp", "_time_stamp_list", "_discard_data_counter", "_channel", 'amp_gain', 'data_counter', 'cali_coeff', '_cali_coeff', "_cycle_start_time", "_adc_clock", "_axis_ch", "_prev_delta_time","_prev_data", "_prev_time_stamp"
|
|
|
|
def __init__(self, cali_coeff: bytes = None):
|
|
super().__init__()
|
|
self._start_return_data = False
|
|
self._time_stamp = 0
|
|
self._time_stamp_list = []
|
|
self._discard_data_counter = 0
|
|
self._channel = 0
|
|
self._adc_clock = 0
|
|
self._axis_ch = 0
|
|
|
|
self.amp_gain: int = 0
|
|
self.data_counter: int = 0
|
|
|
|
self._cali_coeff: Optional[bytes] = None
|
|
self.cali_coeff: Optional[List[Tuple[int, int]]] = None
|
|
|
|
self._cycle_start_time = []
|
|
|
|
if cali_coeff is not None:
|
|
self._cali_coeff = cali_coeff
|
|
self.cali_coeff = self._decode_cali_coeff(cali_coeff)
|
|
|
|
self._prev_data = None
|
|
self._prev_delta_time = None
|
|
self._prev_time_stamp = None
|
|
|
|
@staticmethod
|
|
def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
|
|
if cali_coeff != b'':
|
|
cali_table = []
|
|
|
|
max_length = 4
|
|
|
|
size_of_cali_data_per_amp_gain_level = 33
|
|
|
|
for i in range(0, max_length):
|
|
for j in range(1, size_of_cali_data_per_amp_gain_level, 4):
|
|
offset = i * size_of_cali_data_per_amp_gain_level + j
|
|
amp = struct.unpack('>h', cali_coeff[offset: offset + 2])[0]
|
|
offset = struct.unpack('>h', cali_coeff[offset + 2: offset + 4])[0]
|
|
|
|
cali_table.append((amp, offset))
|
|
|
|
# print('decode cali', i , j , amp , offset)
|
|
# print('cali_table', cali_table)
|
|
|
|
return cali_table
|
|
else:
|
|
print()
|
|
return None
|
|
|
|
@property
|
|
def name(self) -> AnyStr:
|
|
if self._cali_coeff is None:
|
|
return self.NAME
|
|
else:
|
|
return self.NAME.encode() + b':' + self._cali_coeff
|
|
@property
|
|
def real_sample_rate(self) -> int:
|
|
result = 0
|
|
if self._adc_clock != 0:
|
|
result = (200 / self._adc_clock) * 1000
|
|
return result
|
|
|
|
def decode(self, data: bytes) -> Optional[RecordingData]:
|
|
if len(data) < 20:
|
|
return None
|
|
|
|
# data_packet contains (data_length) pair of datas
|
|
data_length = int(data[1])
|
|
# axis data start in index (axis_start_index)
|
|
axis_start_index = 8 + data_length * 2
|
|
# data_packet contains (axis_data_length) pair of datas
|
|
axis_data_length = int((len(data) - axis_start_index) / 6)
|
|
|
|
if data_length == 0:
|
|
return None
|
|
|
|
time_stamp: float = struct.unpack('>I', data[2:6])[0]
|
|
time_delta: float = struct.unpack('>H', data[6:8])[0]
|
|
|
|
# print('absolute time_stamp', time_stamp * 1000 / 32)
|
|
|
|
"""
|
|
why multiple first then divide at last
|
|
"""
|
|
# time_stamp = time_stamp * 32 # unit: 1/32K sec, 1/32 ms
|
|
# time_delta = time_delta * 32 # unit: as above
|
|
|
|
''' garbage -> 0 -> real data'''
|
|
''' False -> True -> True '''
|
|
''' Some device will start early before enter decoder, so start flag will never enable'''
|
|
if time_stamp == 0 or (self._time_stamp != 0 and self._time_stamp < time_stamp):
|
|
self._start_return_data = True
|
|
|
|
if time_stamp is None or time_stamp == 0 or not self._start_return_data:
|
|
self._time_stamp = time_stamp
|
|
return None
|
|
|
|
if self._discard_data_counter < 10:
|
|
self._discard_data_counter += 1
|
|
return None
|
|
|
|
stop = len(data)
|
|
|
|
if time_stamp != 0 and self._start_return_data:
|
|
time_stamp, _ , ret_get_time_stamp = self.get_time_stamp(time_stamp)
|
|
|
|
if data_length == 1 or int(time_delta) == 0:
|
|
sample_rate = 0
|
|
|
|
if len(self._prev_time_stamp) > 0 and time_stamp is not None:
|
|
# print('prev_time_stamp, time_stamp', self._prev_time_stamp[0], time_stamp)
|
|
data_length_for_sample_rate = data_length
|
|
data_packets_time_delta = time_stamp - self._prev_time_stamp[0]
|
|
|
|
if self._prev_time_stamp[0] > time_stamp:
|
|
return None
|
|
|
|
if int(data_packets_time_delta / self._prev_delta_time[0]) >= 2 or self._prev_time_stamp[0] is None:
|
|
data_packets_time_delta = self._prev_delta_time[0]
|
|
|
|
# unit 1/s
|
|
sample_rate = 1000 * (data_length_for_sample_rate) / data_packets_time_delta
|
|
sample_rate_channel_upper_256 = sample_rate * axis_data_length / data_length
|
|
|
|
# print('sample_rate', sample_rate)
|
|
|
|
ret = RecordingData(self.device, (self._prev_time_stamp[0] * 1000), int(sample_rate), int(sample_rate_channel_upper_256), 4)
|
|
|
|
ret.cycle = self._cycle_start_time
|
|
|
|
# get user setting gain level
|
|
# and set amp_gain=0~3 => gain=25,100,400,800
|
|
amp_gain = self.amp_gain
|
|
amp_gain = amp_gain + 1
|
|
if amp_gain == 4:
|
|
amp_gain = 0
|
|
|
|
# decode recording data
|
|
for i in range(data_length):
|
|
# avoid index out of range
|
|
offset = 8 + 2 * i
|
|
if offset + 1 < stop:
|
|
d1 = (data[offset] & 0xF0) >> 4
|
|
d2 = (data[offset] & 0x0F)
|
|
d3 = data[offset + 1]
|
|
|
|
channel = d1
|
|
value = d2 << 8 | d3
|
|
|
|
# print("\nNeulive 3.x")
|
|
# print("channel", channel + 1)
|
|
# print("value", value - 2048)
|
|
# print("amp_gain = ", amp_gain)
|
|
|
|
# print("cali:", self.cali_coeff)
|
|
if channel < 8 and self._prev_data[0] is not None:
|
|
gain, offset = self._prev_data[0][8 * amp_gain + channel]
|
|
# print('cali_gain', gain)
|
|
# print('cali_offset', offset)
|
|
|
|
if gain == 0:
|
|
cali_value = value - 2048
|
|
elif gain == 1 and offset == 0:
|
|
cali_value = value - 2048
|
|
else:
|
|
cali_value = int(1000 * ((value - 2048 - offset) / gain))
|
|
else:
|
|
cali_value = value - 2048
|
|
# print('c,v', channel, cali_value)
|
|
ret.append_data(channel, cali_value)
|
|
# print('\n')
|
|
# decode 3-axis acc data
|
|
|
|
x_axis_acc_ch = 256
|
|
y_axis_acc_ch = 257
|
|
z_axis_acc_ch = 258
|
|
axis_acc_ch = 259
|
|
|
|
if self._axis_ch > 0:
|
|
axis_channel_allow = bin(self._axis_ch)[2:]
|
|
axis_channel_allow_list = [ch for ch in axis_channel_allow]
|
|
axis_channel_allow_list.reverse()
|
|
for i in range(axis_data_length):
|
|
x_axis_index: int = i*6 + axis_start_index
|
|
y_axis_index: int = i*6 + axis_start_index + 2
|
|
z_axis_index: int = i*6 + axis_start_index + 4
|
|
|
|
x_axis_data = data[x_axis_index] << 8 | data[x_axis_index + 1]
|
|
y_axis_data = data[y_axis_index] << 8 | data[y_axis_index + 1]
|
|
z_axis_data = data[z_axis_index] << 8 | data[z_axis_index + 1]
|
|
|
|
# using 2's complement
|
|
if x_axis_data >= 0x8000:
|
|
x_axis_data = x_axis_data - 0xFFFF
|
|
if y_axis_data >= 0x8000:
|
|
y_axis_data = y_axis_data - 0xFFFF
|
|
if z_axis_data >= 0x8000:
|
|
z_axis_data = z_axis_data - 0xFFFF
|
|
|
|
axis_data = int(math.sqrt(x_axis_data ** 2 + y_axis_data ** 2 + z_axis_data ** 2))
|
|
|
|
if len(axis_channel_allow_list) >= 1:
|
|
if int(axis_channel_allow_list[0]) == 1:
|
|
ret.append_data(x_axis_acc_ch, int(x_axis_data / 100))
|
|
if len(axis_channel_allow_list) >= 2:
|
|
if int(axis_channel_allow_list[1]) == 1:
|
|
ret.append_data(y_axis_acc_ch, int(y_axis_data / 100))
|
|
if len(axis_channel_allow_list) >= 3:
|
|
if int(axis_channel_allow_list[2]) == 1:
|
|
ret.append_data(z_axis_acc_ch, int(z_axis_data / 100))
|
|
if len(axis_channel_allow_list) >= 4:
|
|
if int(axis_channel_allow_list[3]) == 1:
|
|
ret.append_data(axis_acc_ch, int(axis_data / 100))
|
|
|
|
self._prev_data.pop()
|
|
self._prev_time_stamp.pop()
|
|
self._prev_delta_time.pop()
|
|
|
|
self._prev_data.append(self.cali_coeff)
|
|
self._prev_time_stamp.append(time_stamp)
|
|
self._prev_delta_time.append(time_delta)
|
|
|
|
return ret
|
|
else:
|
|
if time_stamp is not None:
|
|
self._prev_data.append(self.cali_coeff)
|
|
self._prev_time_stamp.append(time_stamp)
|
|
self._prev_delta_time.append(time_delta)
|
|
|
|
return None
|
|
|
|
class I4V4Z4T4DataDecoder(RecDataDecoder):
|
|
"""
|
|
::
|
|
|
|
| | 1 | 2 | 3 |
|
|
0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2
|
|
-----------------------------------------------------------------
|
|
| header |
|
|
| current |
|
|
| voltage |
|
|
| impedance |
|
|
| time stamp |
|
|
| cycle number |
|
|
|
|
cycle number
|
|
for cyclic voltammetry use, we save it as channel number.
|
|
0xFF
|
|
|
|
"""
|
|
|
|
NAME = 'I4V4Z4T4'
|
|
|
|
MESSAGE_CYCLE_COMPLETE = 'CycleComplete'
|
|
|
|
__slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
|
|
'_total_time_stamp', '_mode', '_cycle_start_time',
|
|
'_mode_stop', '_show_data')
|
|
|
|
def __init__(self):
|
|
super().__init__()
|
|
|
|
self._cycle_number = 0
|
|
self._message: Optional[str] = None
|
|
self._start_return_data = False
|
|
self._time_stamp = 0
|
|
self._total_time_stamp = 0
|
|
self._mode_stop = 0
|
|
|
|
self._mode = 0
|
|
self._cycle_start_time = []
|
|
|
|
self._show_data = False
|
|
|
|
@property
|
|
def name(self) -> str:
|
|
return self.NAME
|
|
|
|
def message(self) -> Optional[str]:
|
|
ret = self._message
|
|
self._message = None
|
|
|
|
return ret
|
|
|
|
def decode(self, data: bytes) -> Optional[RecordingData]:
|
|
if len(data) < 18:
|
|
return None
|
|
voltage = 0
|
|
mem_cnt = data[1]
|
|
time_stamp: float = struct.unpack('<I', data[4:8])[0] # unit: ms 0x18030000
|
|
current = struct.unpack('<i', data[8:12])[0] # unit: nA
|
|
voltage = struct.unpack('<i', data[12:16])[0] # unit: uV
|
|
impedance = struct.unpack('<i', data[16:20])[0] # unit: mOm
|
|
|
|
cycle_number = struct.unpack('<H', data[20:22])[0]
|
|
finish_mode_falg = data[22]
|
|
battery = struct.unpack('<i', data[23:27])[0]
|
|
elite_notify_times = data[27]
|
|
notify_one = struct.unpack('<i', data[28:32])[0]
|
|
notify_two = struct.unpack('<i', data[32:36])[0]
|
|
notify_three = struct.unpack('<i', data[36:40])[0]
|
|
# self._show_data = True
|
|
|
|
mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
|
|
ram_num = data[47]
|
|
broken_flag = data[-1]
|
|
|
|
if (finish_mode_falg & 0b11110000 == 0b10100000):
|
|
finishMode = True
|
|
else:
|
|
finishMode = False
|
|
|
|
if time_stamp == 0:
|
|
self._start_return_data = True
|
|
|
|
if time_stamp is None or time_stamp == 0 or not self._start_return_data:
|
|
return None
|
|
|
|
if time_stamp != 0 and self._start_return_data == True:
|
|
time_stamp, delta, ret_get_time_stamp = self.get_time_stamp(time_stamp)
|
|
|
|
if ret_get_time_stamp == True:
|
|
print("error timeStamp full data:", list(data), datetime.now(), '\n')
|
|
return None
|
|
else:
|
|
if self._show_data:
|
|
print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
|
|
'|', current, '|', voltage, '|', impedance, '|', cycle_number,
|
|
'|', notify_one, '|', notify_two, '|', notify_three,
|
|
'|', finishMode, '@', str(self.device))
|
|
|
|
# print('|', '{:10}'.format(time_stamp),
|
|
# '|', '{:4}'.format(delta),
|
|
# '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
|
|
# '|', '{:10}'.format(current),
|
|
# '|', '{:10}'.format(voltage),
|
|
# '|', '{:10}'.format(impedance),
|
|
# '|', '{:5}'.format(cycle_number),
|
|
# '|', '{:1}'.format(finishMode),
|
|
# '@', str(self.device), '|')
|
|
|
|
# print('|', '{:5}'.format(mem_wrong_information),
|
|
# '|', '{:2}'.format(ram_num),
|
|
# '|', '{:2}'.format(broken_flag),
|
|
# '@', str(self.device), '|')
|
|
pass
|
|
|
|
if finishMode == True:
|
|
print("finishMode full data:", list(data), datetime.now())
|
|
self._mode_stop = 1
|
|
else:
|
|
self._mode_stop = 0
|
|
|
|
ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
|
|
ret.append_data(0, current)
|
|
ret.append_data(1, voltage)
|
|
ret.append_data(2, impedance)
|
|
ret.append_data(3, cycle_number)
|
|
ret.append_data(4, notify_one)
|
|
ret.append_data(5, notify_two)
|
|
ret.append_data(6, notify_three)
|
|
# ret.append_data(4, battery)
|
|
# ret.append_data(5, elite_notify_times)
|
|
# ret.append_data(6, mem_cnt)
|
|
|
|
# # memoryboard information
|
|
# ret.append_data(7, ram_num)
|
|
# ret.append_data(8, broken_flag)
|
|
# try:
|
|
# ret.append_data(9, mem_wrong_information)
|
|
# # print('append_data success, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
|
|
# except:
|
|
# print('append_data fail, mem_wrong_information:', mem_wrong_information, hex(mem_wrong_information))
|
|
|
|
|
|
|
|
if cycle_number != self._cycle_number:
|
|
# notify cycle_number change
|
|
self._message = self.MESSAGE_CYCLE_COMPLETE + '=%d' % cycle_number
|
|
self._cycle_number = cycle_number
|
|
|
|
return ret
|
|
|
|
def isFinishMode(self) -> int:
|
|
return self._mode_stop
|
|
|
|
class TDBC4VCTHDataDecoder(RecDataDecoder):
|
|
"""
|
|
::
|
|
|
|
| | 1 | 2 | 3 |
|
|
0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2
|
|
-----------------------------------------------------------------
|
|
| header | length |
|
|
| timestamp |
|
|
| | battery voltage |
|
|
|channel| channel voltage |
|
|
| stimulation remind times |
|
|
|channel| channel voltage |
|
|
| stimulation remind times |
|
|
|
|
"""
|
|
|
|
NAME = 'TDBC4VCTH'
|
|
|
|
__slots__ = ('_remind',)
|
|
|
|
def __init__(self):
|
|
super().__init__()
|
|
|
|
self._remind: int = 1
|
|
|
|
@property
|
|
def name(self) -> str:
|
|
return self.NAME
|
|
|
|
def decode(self, data: bytes) -> Optional[RecordingData]:
|
|
if self._remind == 0:
|
|
raise EODInterrupt()
|
|
|
|
if len(data) < 6:
|
|
return None
|
|
|
|
data_length = int(data[1])
|
|
|
|
if data_length == 0:
|
|
return None
|
|
|
|
time_stamp: float = struct.unpack('<I', data[2:6])[0]
|
|
|
|
time_stamp, _, ret_get_time_stamp = self.get_time_stamp(time_stamp)
|
|
|
|
ret = RecordingData(self.device, int(time_stamp), 0)
|
|
|
|
if data_length >= 8:
|
|
d1 = data[6]
|
|
d2 = data[7]
|
|
|
|
voltage = ((d1 & 0xF0) << 8) | (d2 & 0xFF)
|
|
voltage = 4300 * voltage / 4096
|
|
|
|
ret.append_data(0, int(voltage))
|
|
|
|
remind = 0
|
|
|
|
for i in range(8, data_length, 4):
|
|
d1 = data[i]
|
|
d2 = data[i + 1]
|
|
d3 = data[i + 2]
|
|
d4 = data[i + 3]
|
|
|
|
channel = (d1 >> 4) & 0x0F
|
|
value = ((d1 & 0x0F) << 8) | (d2 & 0xFF)
|
|
remind += ((d3 & 0xFF) << 8) | (d4 & 0xFF)
|
|
|
|
value = 26 * value - 25 * voltage
|
|
|
|
ret.append_data(channel, int(value))
|
|
|
|
self._remind = remind
|
|
|
|
return ret
|
|
|
|
class NeuliveThreeOneDataDecoder(RecDataDecoder):
|
|
"""
|
|
::
|
|
|
|
| | 1 | 2 | 3 |
|
|
0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2
|
|
-----------------------------------------------------------------
|
|
| timestamp |
|
|
|channel data # |
|
|
| delta time |
|
|
| channel data |
|
|
| x-axis acc data |
|
|
| y-axis acc data |
|
|
| z-axis acc data |
|
|
|
|
"""
|
|
|
|
NAME = 'NeuliveThreeOne'
|
|
|
|
AMP_GAIN = (100, 400, 800, 25)
|
|
CH_NUMBER = 8
|
|
GAIN_LEVEL_NUMBER = 4
|
|
|
|
__slots__ = ("_start_return_data", "_time_stamp", "_time_stamp_list", "_discard_data_counter",
|
|
"_channel", 'amp_gain', 'data_counter', 'cali_coeff', '_cali_coeff', "_cycle_start_time",
|
|
"_adc_clock", "_axis_ch", "_prev_delta_time","_prev_data", "_prev_time_stamp",
|
|
"_accelerator_sensitivity", '_prev_packet_delta_time', '_prev_packet_delta_mean')
|
|
|
|
def __init__(self, cali_coeff: bytes = None):
|
|
super().__init__()
|
|
self._start_return_data = False
|
|
self._time_stamp = 0
|
|
self._time_stamp_list = []
|
|
self._discard_data_counter = 0
|
|
self._channel = 0
|
|
self._adc_clock = 0
|
|
self._axis_ch = 0
|
|
self._accelerator_sensitivity = 0
|
|
|
|
self.amp_gain: int = 0
|
|
self.data_counter: int = 0
|
|
|
|
self._cali_coeff: Optional[bytes] = None
|
|
self.cali_coeff: Optional[List[Tuple[int, int]]] = None
|
|
|
|
self._cycle_start_time = []
|
|
|
|
if cali_coeff is not None:
|
|
self._cali_coeff = cali_coeff
|
|
self.cali_coeff = self._decode_cali_coeff(cali_coeff)
|
|
|
|
self._prev_data = None
|
|
self._prev_delta_time = None
|
|
self._prev_time_stamp = None
|
|
self._prev_packet_delta_time = []
|
|
self._prev_packet_delta_mean = None
|
|
|
|
@staticmethod
|
|
def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
|
|
if cali_coeff != b'':
|
|
cali_table = []
|
|
|
|
max_length = 4
|
|
|
|
size_of_cali_data_per_amp_gain_level = 64
|
|
|
|
for i in range(0, max_length):
|
|
for j in range(0, size_of_cali_data_per_amp_gain_level, 4):
|
|
index = i * size_of_cali_data_per_amp_gain_level + j
|
|
amp = struct.unpack('>h', cali_coeff[index: index + 2])[0]
|
|
offset = struct.unpack('>h', cali_coeff[index + 2: index + 4])[0]
|
|
|
|
cali_table.append((amp, offset))
|
|
|
|
# print('decode cali', i , j , amp , offset)
|
|
# print('cali_table', cali_table)
|
|
|
|
return cali_table
|
|
else:
|
|
print()
|
|
return None
|
|
|
|
@property
|
|
def name(self) -> AnyStr:
|
|
if self._cali_coeff is None:
|
|
return self.NAME
|
|
else:
|
|
return self.NAME.encode() + b':' + self._cali_coeff
|
|
|
|
@property
|
|
def real_sample_rate(self) -> int:
|
|
result = 0
|
|
if self._adc_clock != 0:
|
|
result = (200 / self._adc_clock) * 1000
|
|
return result
|
|
|
|
def decode(self, data: bytes) -> Optional[RecordingData]:
|
|
if data is None:
|
|
return None
|
|
|
|
data_length = data[5]
|
|
|
|
# channel data & acc data number should be data_length+2
|
|
if (len(data)-8)/3 != data_length+2:
|
|
return None
|
|
|
|
axis_start_index = 8 + data_length * 3 # 239
|
|
axis_data_length = int((len(data) - axis_start_index) / 6)
|
|
|
|
time_stamp: int = struct.unpack('<I', data[1:5])[0] # unit us
|
|
time_delta: int = struct.unpack('<H', data[6:8])[0] # unit us
|
|
|
|
# print("chip id = ", data[0])
|
|
# print("data_length = ", data_length)
|
|
# print("time_stamp = ", data[1], data[2], data[3], data[4])
|
|
# print("time_delta = ", data[6], data[7])
|
|
|
|
stop = len(data)
|
|
|
|
if time_stamp != 0:
|
|
time_stamp, _, ret_get_time_stamp = self.get_time_stamp(time_stamp)
|
|
|
|
if time_stamp is None:
|
|
return None
|
|
|
|
if self._prev_time_stamp is None or len(self._prev_time_stamp) == 0:
|
|
self._prev_time_stamp.append(time_stamp)
|
|
self._prev_delta_time.append(time_delta)
|
|
return None
|
|
|
|
# is packet delta time normal?
|
|
data_packets_time_delta = time_stamp - self._prev_time_stamp[0]
|
|
# print("data_packets_time_delta = ", data_packets_time_delta, "; prev_time_stamp = ", self._prev_time_stamp[0])
|
|
|
|
if data_packets_time_delta <= 0:
|
|
return None
|
|
|
|
elif self._prev_packet_delta_mean is None or self._prev_packet_delta_mean == 0:
|
|
self._prev_packet_delta_time = []
|
|
self._prev_packet_delta_time.append(data_packets_time_delta)
|
|
self._prev_packet_delta_mean = sum(self._prev_packet_delta_time) / len(self._prev_packet_delta_time)
|
|
|
|
elif data_packets_time_delta > 3 * self._prev_packet_delta_mean:
|
|
# print("[warning] data lost time = ", time_stamp/1e6)
|
|
self._prev_packet_delta_mean = 0
|
|
self._prev_packet_delta_time = []
|
|
|
|
else:
|
|
# update packet delta standard
|
|
MAX_PREV_PACKET = 10
|
|
if len(self._prev_packet_delta_time) >= MAX_PREV_PACKET:
|
|
self._prev_packet_delta_time.pop(0)
|
|
self._prev_packet_delta_time.append(data_packets_time_delta)
|
|
self._prev_packet_delta_mean = sum(self._prev_packet_delta_time) / len(self._prev_packet_delta_time)
|
|
|
|
# get sample rate
|
|
if data_length == 1 or int(time_delta) == 0:
|
|
sample_rate = 0
|
|
acc_sample_rate = 0
|
|
else:
|
|
sample_rate = data_length * 1e6 / time_delta # unit 1/s
|
|
acc_sample_rate = sample_rate / data_length
|
|
|
|
# create record ret
|
|
ret = RecordingData(self.device, self._prev_time_stamp[0], int(sample_rate), int(acc_sample_rate), 4)
|
|
ret.cycle = self._cycle_start_time
|
|
|
|
# get user setting gain level
|
|
# and set amp_gain=0~3 => gain=25, 100, 400, 800
|
|
amp_gain = self.amp_gain
|
|
amp_gain = amp_gain + 1
|
|
if amp_gain == 4:
|
|
amp_gain = 0
|
|
|
|
# decode recording data
|
|
NUMBER_OF_CALI_CH = 16
|
|
for i in range(data_length):
|
|
# avoid index out of range
|
|
offset = 8 + 3 * i
|
|
if offset + 1 < stop:
|
|
ch = data[offset]
|
|
d1 = data[offset + 1]
|
|
d2 = data[offset + 2]
|
|
|
|
channel = ch
|
|
value = d1 << 8 | d2
|
|
|
|
if channel < NUMBER_OF_CALI_CH and self.cali_coeff is not None:
|
|
gain, offset = self.cali_coeff[NUMBER_OF_CALI_CH * amp_gain + channel]
|
|
|
|
if gain == 0:
|
|
cali_value = value - 2048
|
|
elif gain == 1 and offset == 0:
|
|
cali_value = value - 2048
|
|
else:
|
|
cali_value = int(1000 * ((value - 2048 - offset) / gain))
|
|
# print("gain = ", gain)
|
|
# print("offset = ", offset)
|
|
else:
|
|
cali_value = value - 2048
|
|
ret.append_data(channel, cali_value)
|
|
# print("\n")
|
|
|
|
# decode 3-axis acc data
|
|
x_axis_acc_ch = 256
|
|
y_axis_acc_ch = 257
|
|
z_axis_acc_ch = 258
|
|
axis_acc_ch = 259
|
|
divide_ratio = 0
|
|
|
|
if self._axis_ch > 0:
|
|
|
|
if self._accelerator_sensitivity == 0:
|
|
divide_ratio = 16384
|
|
elif self._accelerator_sensitivity == 1:
|
|
divide_ratio = 8192
|
|
elif self._accelerator_sensitivity == 2:
|
|
divide_ratio = 4096
|
|
elif self._accelerator_sensitivity == 3:
|
|
divide_ratio = 2048
|
|
|
|
axis_channel_allow = bin(self._axis_ch)[2:]
|
|
axis_channel_allow_list = [ch for ch in axis_channel_allow]
|
|
axis_channel_allow_list.reverse()
|
|
for i in range(axis_data_length):
|
|
x_axis_index: int = i*6 + axis_start_index
|
|
y_axis_index: int = i*6 + axis_start_index + 2
|
|
z_axis_index: int = i*6 + axis_start_index + 4
|
|
|
|
x_axis_data = data[x_axis_index + 1] << 8 | data[x_axis_index]
|
|
y_axis_data = data[y_axis_index + 1] << 8 | data[y_axis_index]
|
|
z_axis_data = data[z_axis_index + 1] << 8 | data[z_axis_index]
|
|
|
|
# print("x_axis_data = ", x_axis_data, "y_axis_data = ", y_axis_data, "z_axis_data", z_axis_data)
|
|
|
|
# using 2's complement
|
|
if x_axis_data >= 0x8000:
|
|
x_axis_data = x_axis_data - 0xFFFF
|
|
if y_axis_data >= 0x8000:
|
|
y_axis_data = y_axis_data - 0xFFFF
|
|
if z_axis_data >= 0x8000:
|
|
z_axis_data = z_axis_data - 0xFFFF
|
|
|
|
axis_data = int(math.sqrt(x_axis_data ** 2 + y_axis_data ** 2 + z_axis_data ** 2))
|
|
|
|
if self._axis_ch >= 1:
|
|
ret.append_data(x_axis_acc_ch, int((x_axis_data) / divide_ratio))
|
|
if self._axis_ch >= 2:
|
|
ret.append_data(y_axis_acc_ch, int((y_axis_data) / divide_ratio))
|
|
if self._axis_ch >= 4:
|
|
ret.append_data(z_axis_acc_ch, int((z_axis_data) / divide_ratio))
|
|
if self._axis_ch >= 8:
|
|
ret.append_data(axis_acc_ch, int((axis_data) / divide_ratio))
|
|
|
|
# update previous time stamp
|
|
self._prev_time_stamp.pop()
|
|
self._prev_delta_time.pop()
|
|
|
|
self._prev_time_stamp.append(time_stamp)
|
|
self._prev_delta_time.append(time_delta)
|
|
return ret
|
|
|
|
class EISZeroOneDataDecoder(RecDataDecoder):
|
|
"""
|
|
::S
|
|
|
|
| | 1 | 2 | 3 |
|
|
0 1 2 3 4 5 6 7 0 1 2 3 4 5 6 7 0 1 2 3 4 5 6 7 0 1 2 3 4 5 6 7
|
|
-----------------------------------------------------------------
|
|
| id |
|
|
| ch1 |
|
|
| ch2 |
|
|
| ch3 |
|
|
| timestamp |
|
|
| None |
|
|
| finishMode |
|
|
|
|
"""
|
|
|
|
NAME = 'EISZeroOne'
|
|
|
|
MESSAGE_CYCLE_COMPLETE = 'CycleComplete'
|
|
|
|
__slots__ = ('_message', '_cycle_number', '_start_return_data', '_time_stamp',
|
|
'_total_time_stamp', '_mode', '_cycle_start_time',
|
|
'_mode_stop', '_last_time_stamp', '_last_delta', '_cali_coeff',
|
|
'cali_coeff', '_ac_amp', '_mode', '_freq_start', '_freq_stop',
|
|
'_freq_direction', '_last_phase', '_first_phase_flag', '_show_data')
|
|
|
|
def __init__(self, cali_coeff: bytes = None):
|
|
super().__init__()
|
|
|
|
self._cycle_number = 0
|
|
self._message: Optional[str] = None
|
|
self._start_return_data = False
|
|
self._time_stamp = 0
|
|
self._total_time_stamp = 0
|
|
self._mode_stop = 0
|
|
|
|
self._cycle_start_time = []
|
|
self._ac_amp: int = 0
|
|
self._mode: int = 0
|
|
self._freq_start: int = 0
|
|
self._freq_stop: int = 0
|
|
self._freq_direction = 0
|
|
self._last_phase = 0
|
|
self._first_phase_flag = 1
|
|
|
|
self._cali_coeff: Optional[bytes] = None
|
|
self.cali_coeff: Optional[List[Tuple[int, int]]] = None
|
|
|
|
self._show_data = False
|
|
|
|
if cali_coeff is not None:
|
|
self._cali_coeff = cali_coeff
|
|
self.cali_coeff = self._decode_cali_coeff(cali_coeff)
|
|
|
|
@staticmethod
|
|
def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
|
|
if cali_coeff != b'':
|
|
cali_table = []
|
|
hsrtia_a = []
|
|
hsrtia_b = []
|
|
hsrtia_c = []
|
|
hsrtia_d = []
|
|
phase_coeff = []
|
|
phase_offset = []
|
|
|
|
# phase_coeff = [[0]*4 for i in range(4)]
|
|
# phase_offset = [[0]*4 for i in range(4)]
|
|
|
|
phase_coeff = numpy.zeros([4, 4], dtype = int)
|
|
phase_offset = numpy.zeros([4, 4], dtype = int)
|
|
|
|
########################################
|
|
# phase_coeff
|
|
# [[gain0, g1, g2, g3] ----->最高頻
|
|
# [gain0, g1, g2, g3] ----->中頻
|
|
# [gain0, g1, g2, g3] ----->低頻
|
|
# [gain0, g1, g2, g3] ----->最低頻
|
|
# ]
|
|
#######################################
|
|
|
|
# print('cali_coeff', cali_coeff)
|
|
cutoff_freq = struct.unpack('>I', cali_coeff[1:5])[0] * 100 #4
|
|
# temp = struct.unpack('>B', cali_coeff[5:6])[0] #1
|
|
# hsrtia_200r = struct.unpack('>B', cali_coeff[6:7])[0] #1
|
|
# hsrtia_5k = struct.unpack('>H', cali_coeff[7:9])[0] #2
|
|
# hsrtia_20k = struct.unpack('>H', cali_coeff[6:8])[0] #2
|
|
# hsrtia_160k = struct.unpack('>I', cali_coeff[8:12])[0] #4
|
|
|
|
index = 20
|
|
g = 0
|
|
phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
index = 40
|
|
g = 0
|
|
phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
#Lv[0] 160k
|
|
index = 60
|
|
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
|
|
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
|
|
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
|
|
|
|
#Lv[1] 20k
|
|
index = 80
|
|
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
|
|
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
|
|
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
|
|
|
|
#Lv[2] 5k
|
|
index = 100
|
|
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
|
|
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
|
|
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
|
|
|
|
#Lv[3] 200R
|
|
index = 120
|
|
hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
|
|
hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
|
|
hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0]/1e4)
|
|
|
|
index = 140
|
|
g = 1
|
|
phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
index = 160
|
|
g = 1
|
|
phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
index = 180
|
|
g = 2
|
|
phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
index = 200
|
|
g = 2
|
|
phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
index = 220
|
|
g = 3
|
|
phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
index = 240
|
|
g = 3
|
|
phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
|
|
phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
|
|
phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
|
|
phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
|
|
|
|
# print('cutoff_freq', cutoff_freq)
|
|
# print('hsrtia_a', hsrtia_a)
|
|
# print('hsrtia_b', hsrtia_b)
|
|
# print('hsrtia_c', hsrtia_c)
|
|
# print('phase_coeff')
|
|
# print(phase_coeff)
|
|
# print('phase_offset')
|
|
# print(phase_offset)
|
|
|
|
cali_table.append((cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
|
|
|
|
return cali_table
|
|
else:
|
|
print()
|
|
return None
|
|
|
|
@property
|
|
def name(self) -> AnyStr:
|
|
if self._cali_coeff is None:
|
|
return self.NAME
|
|
else:
|
|
return self.NAME.encode() + b':' + self._cali_coeff
|
|
|
|
def message(self) -> Optional[str]:
|
|
ret = self._message
|
|
self._message = None
|
|
|
|
return ret
|
|
|
|
def decode(self, data: bytes) -> Optional[RecordingData]:
|
|
if len(data) < 18:
|
|
return None
|
|
|
|
ch1 = struct.unpack('>i', data[1+3:5+3])[0] # unit: 1/1000 nA
|
|
ch2 = struct.unpack('>i', data[5+3:9+3])[0] # unit: mV
|
|
ch3 = struct.unpack('>i', data[9+3:13+3])[0] # unit: kOm
|
|
time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0] # unit: ms
|
|
cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
|
|
d19 = data[19+3]
|
|
gain = (d19 & 0x0F)
|
|
finishMode = (d19 & 0x80) >> 7
|
|
|
|
if time_stamp == 0:
|
|
self._start_return_data = True
|
|
|
|
if time_stamp is None or time_stamp == 0 or not self._start_return_data:
|
|
return None
|
|
|
|
if time_stamp != 0 and self._start_return_data == True:
|
|
if (self._mode == 0):
|
|
time_stamp, delta, ret_get_time_stamp = self.eis_get_time_stamp(time_stamp)
|
|
else:
|
|
time_stamp, delta, ret_get_time_stamp = self.get_time_stamp(time_stamp)
|
|
|
|
if time_stamp is None or time_stamp < 0 or delta < 0:
|
|
print("error timeStamp full data:", list(data), datetime.now(), '\n')
|
|
return None
|
|
else:
|
|
if self.cali_coeff is not None and self._mode == 0:
|
|
hsrtia_a = []
|
|
hsrtia_b = []
|
|
hsrtia_c = []
|
|
hsrtia_d = []
|
|
cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
|
|
|
|
voltage_amp = round(self._ac_amp * 800 / 2047) # use UI value
|
|
if (self._freq_start > self._freq_stop):
|
|
self._freq_direction = 0
|
|
else:
|
|
self._freq_direction = 1
|
|
|
|
if (self._mode == 0):
|
|
img = ch1
|
|
real = ch2
|
|
freq = ch3
|
|
fre_idx = 0
|
|
|
|
voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 / cutoff_freq ** 2)
|
|
|
|
# if (gain == 3):
|
|
# current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
|
|
# else:
|
|
current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
|
|
# print(current)
|
|
# print(voltage_mag)
|
|
# print(hsrtia_a[gain])
|
|
# print(hsrtia_b[gain])
|
|
# print(hsrtia_c[gain])
|
|
|
|
if (current != 0):
|
|
# impedance = voltage_amp * 1000_000 / 1.414213 / current
|
|
impedance = voltage_amp * 707106.78 / current
|
|
else:
|
|
impedance = 0
|
|
|
|
raw_phase = math.atan2(img , real) * 180 / math.pi
|
|
|
|
if (freq >= 1000000): # 10000 Hz
|
|
fre_idx = 0
|
|
elif (freq >= 10000): # 100 Hz
|
|
fre_idx = 1
|
|
elif (freq >= 1000): # 10 Hz
|
|
fre_idx = 2
|
|
elif (freq >= 1): # 0.01 Hz
|
|
fre_idx = 3
|
|
|
|
ideal_raw_phase = phase_coeff[gain][fre_idx] /1e10 * freq + phase_offset[gain][fre_idx] / 1e6
|
|
phase = raw_phase - ideal_raw_phase
|
|
phase = phase % 180 if phase % 180<=90 else phase % 180-180
|
|
|
|
# last_phase_to90 = self._last_phase % 180 if self._last_phase % 180<=90 else self._last_phase % 180-180
|
|
# diff = phase - last_phase_to90
|
|
|
|
# if (self._first_phase_flag):
|
|
# # self._last_phase = phase
|
|
# self._first_phase_flag = 0
|
|
# elif (abs(diff) >= 90):
|
|
# phase = self._last_phase + diff + (180 if diff<0 else-180)
|
|
# else:
|
|
# phase = self._last_phase + diff
|
|
# self._last_phase = phase
|
|
|
|
imag_after_cal = impedance * math.sin(round(phase) * math.pi / 180)
|
|
real_after_cal = impedance * math.cos(round(phase) * math.pi / 180)
|
|
|
|
if self._show_data:
|
|
if (self._mode == 0):
|
|
print('|', '{:10}'.format(time_stamp),
|
|
'|', '{:5}'.format(delta),
|
|
'|', '{:6}'.format(ch1),
|
|
'|', '{:6}'.format(ch2),
|
|
'|', '{:8}'.format(ch3 / 100),
|
|
'|', '{:6}'.format(round(voltage_mag)),
|
|
'|', '{:5}'.format(int(imag_after_cal)),
|
|
'|', '{:5}'.format(int(real_after_cal)),
|
|
'|', '{:5}'.format(round(impedance)),
|
|
'|', '{:5}'.format(round(phase, 1)),
|
|
'|', '{:5}'.format(round(current, 3)),
|
|
'|', '{:1}'.format(gain),
|
|
'|', '{:1}'.format(finishMode),
|
|
'@', str(self.device), '|')
|
|
pass
|
|
else:
|
|
print('|', '{:10}'.format(time_stamp),
|
|
'|', '{:5}'.format(delta),
|
|
'|', '{:5}'.format(ch1),
|
|
'|', '{:5}'.format(ch2),
|
|
'|', '{:5}'.format(ch3),
|
|
'|', '{:5}'.format(cycle_number),
|
|
'|', '{:1}'.format(gain),
|
|
'|', '{:1}'.format(finishMode),
|
|
'@', str(self.device), '|')
|
|
pass
|
|
|
|
if finishMode == True:
|
|
print("finishMode full data:", list(data), datetime.now())
|
|
self._mode_stop = 1
|
|
else:
|
|
self._mode_stop = 0
|
|
|
|
ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
|
|
if (self._mode == 0): #EIS Mode
|
|
ret.append_data(0, ch1) #Raw Imag
|
|
ret.append_data(1, ch2) #Raw Real
|
|
ret.append_data(2, ch3 * 10) #Frequency [mHz]
|
|
ret.append_data(3, cycle_number)
|
|
ret.append_data(4, round(imag_after_cal)) #Z_imag [Ohm]
|
|
ret.append_data(5, round(real_after_cal)) #Z_real [Ohm]
|
|
ret.append_data(6, round(impedance)) #Impedance [Ohm]
|
|
ret.append_data(7, round(phase)) #Phase [degree]
|
|
ret.append_data(8, round(current)) #Current [nA]
|
|
ret.append_data(9, gain) #Gain Level
|
|
|
|
else: #CV Mode
|
|
ret.append_data(0, ch1) #Iin [nA]
|
|
ret.append_data(1, ch2) #Vset [nV]
|
|
ret.append_data(2, ch3) #Vout [nV]
|
|
ret.append_data(3, cycle_number)
|
|
|
|
if cycle_number != self._cycle_number:
|
|
# notify cycle_number change
|
|
self._message = self.MESSAGE_CYCLE_COMPLETE + '=%d' % cycle_number
|
|
self._cycle_number = cycle_number
|
|
|
|
# print("$$$ real_time_stamp $$$")
|
|
# print(time_stamp)
|
|
|
|
return ret
|
|
|
|
def isFinishMode(self) -> int:
|
|
return self._mode_stop
|
|
|