[update] update cali table for 9 hstia

.gitignore

@@ -7,3 +7,4 @@
 /.vscode
 /media
 python/biopro/sever/_identify.py
+*.log

README.md

@@ -158,8 +158,8 @@ reboot
 
 ###### Set pi password
 ```
-$cd ~
+cd ~
-$passwd
+passwd
 Current password:raspberry
 New password:5k6zj454778225
 Retype new password:5k6zj454778225
@@ -198,11 +198,11 @@ exit 0
 ### MQTT broker install
 
 ###### 1.Install mosquitto
-$sudo apt-get install mosquitto mosquitto-clients
+sudo apt-get install mosquitto mosquitto-clients
 
 
 ###### 2.Enable Remote Access
-$sudo vim /etc/mosquitto/conf.d/default.conf
+sudo vim /etc/mosquitto/conf.d/default.conf
 
 add the code following as:
 ```
@@ -213,13 +213,13 @@ protocol websockets
 allow_anonymous true
 ```
 ###### 3.restart mqtt broker
-$sudo systemctl restart mosquitto
+sudo systemctl restart mosquitto
 
 ###### 4.Robust MQTT
 create mosquitto_restart.sh
 
-$cd ~
+cd ~
-$sudo vim mosquitto_restart.sh
+sudo vim mosquitto_restart.sh
 
 
 add the code following as:
@@ -236,16 +236,16 @@ echo "$SERVICE is currently running" >> /home/ubuntu/cron.log
 exit 0
 ```
 ###### 5.add mosquitto_restart.sh to root routing
-$sudo chmod +x mosquitto_restart.sh
+sudo chmod +x mosquitto_restart.sh
-$sudo  -i
+sudo  -i
-$crontab -e
+crontab -e
 
 add the code following as:
 ```
 */5 * * * * /home/pi/mosquitto_restart.sh
 ```
 ###### 6.Auto run MQTT broker when when pi-start
-$sudo vim /etc/rc.local
+sudo vim /etc/rc.local
 
 add the code following as:
 ```
@@ -254,31 +254,31 @@ sudo nohup systemctl restart mosquitto
 
 ### Setting up a Routed Wireless Access Point
 ###### 1.Install AP and Management Software
-$sudo apt install hostapd
+sudo apt install hostapd
-$sudo systemctl unmask hostapd
+sudo systemctl unmask hostapd
-$sudo systemctl enable hostapd
+sudo systemctl enable hostapd
-$sudo apt install dnsmasq
+sudo apt install dnsmasq
-$sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
+sudo DEBIAN_FRONTEND=noninteractive apt install -y netfilter-persistent iptables-persistent
 
 ###### 2.Set up the Network Router
-$sudo nano /etc/dhcpcd.conf
+sudo nano /etc/dhcpcd.conf
 ```
 interface wlan0
     static ip_address=192.168.2.1/24
     nohook wpa_supplicant
 ```
-$sudo nano /etc/sysctl.d/routed-ap.conf
+sudo nano /etc/sysctl.d/routed-ap.conf
 ```
 # Enable IPv4 routing
 net.ipv4.ip_forward=1
 ```
 
-$sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
+sudo iptables -t nat -A POSTROUTING -o eth0 -j MASQUERADE
-$sudo netfilter-persistent save
+sudo netfilter-persistent save
-$sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
+sudo mv /etc/dnsmasq.conf /etc/dnsmasq.conf.orig
 
 
-$sudo nano /etc/dnsmasq.conf
+sudo nano /etc/dnsmasq.conf
 
 ```
 interface=wlan0 # Listening interface
@@ -289,10 +289,10 @@ address=/gw.wlan/192.168.2.1
                 # Alias for this router
 ```
 ###### 3.Ensure Wireless Operation
-$sudo rfkill unblock wlan
+sudo rfkill unblock wlan
 
 ###### 4.Configure the AP Software
-$sudo nano /etc/hostapd/hostapd.conf
+sudo nano /etc/hostapd/hostapd.conf
 
 ```
 country_code=TW
@@ -317,11 +317,13 @@ wme_enabled=1
 ht_capab=[HT40+][SHORT-GI-40]
 ```
 ###### 5.Running the new Wireless AP
-$sudo systemctl reboot
+sudo systemctl reboot
 
+### Install Apache2
+sudo apt install apache2
 
-### Set web site
+### Deploy web site
-$sudo vim ./sites-available/000-default.conf
+sudo vim /etc/apache2/sites-available/000-default.conf
 ```
 <VirtualHost *:8080> #80------>8080
         # The ServerName directive sets the request scheme, hostname and port that
@@ -363,6 +365,11 @@ $sudo vim ./sites-available/000-default.conf
 > https://www.raspberrypi.org/documentation/configuration/wireless/access-point-routed.md
 
 # ChangeLog
+[2022.12.28]
+change meta_project_info to project_metas
+change project_report to project_reports
+alter table project_meta column cycle type string to jsonb
+
 [2022.11.16]
 add python package SQLAlchemy
 add new column project(int4) in postgresSQL table recording_meta_datas

python/biopro/db/project_meta.py

@@ -6,11 +6,11 @@ from sqlalchemy.dialects.postgresql import JSONB
 from .base import Base
 
 class MetaProjectInfo(Base):
-    __tablename__ = "meta_project_info"
+    __tablename__ = "project_metas"
 
     id = Column(Integer, primary_key=True)
     project = Column(String(36))
-    cycle = Column(String)
+    cycle = Column(JSONB)
     task = Column(JSONB)
     serial_number = Column(Integer)
     deleted = Column(Boolean, default = False)

python/biopro/db/project_report.py

@@ -6,7 +6,7 @@ from sqlalchemy.dialects.postgresql import JSONB
 from .base import Base
 
 class ProjectReport(Base):
-    __tablename__ = "project_report"
+    __tablename__ = "project_reports"
 
     id = Column(Integer, primary_key=True)
     name = Column(String)

python/biopro/device/device_cc2650.py

@@ -660,9 +660,9 @@ class CC2650Device(Device):
                             break
 
         elif device_type == 'EISZeroOne':
-            i = 0
+            i = 1
             request_times = 0
-            while i < 13:
+            while i <= 24:
                 try:
                     # send
                     code = self._encode_instruction(DeviceInstruction.TYP_CIS, DeviceInstruction.CIS_CALI, i)
@@ -2177,23 +2177,12 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
         else:
             for dev in self._found:
                 if dev.mac_address == address:
-
-                    # send device mac and addrType
-                    try:
-                        # print('send_connect',bytes(connect_ins))
-                        self._cc2650.send("bytes", bytes(connect_ins))
-
-                    except SerialTimeoutException as e:
-                        raise RecvTimeout('device CC2650 connect fail') from e
-
-                    else:
-                        sleep(2)
-
                     # connection establish done?
                     for retry_recv_ack in range(5):
-                        self._cc2650.send("bytes", bytes((0, 0, 0, 0)))
-
                         try:
+                            # send device mac and addrType
+                            self._cc2650.send("bytes", bytes(connect_ins))
+                            sleep(1.5)
                             con_done = self._cc2650.recv_uart(timeout = 0.1)
 
                         except RecvTimeout:
@@ -2202,6 +2191,7 @@ class CC2650SingleMasterCentralDevice(CC2650MasterDevice, Synchronized):
 
                         # is the ack valid?
                         if con_done is None:
+                            self.log_info("recv connection timeout, retry... ")
                             continue
 
                         elif con_done[0] is 46 and \

python/biopro/device/manager.py

@@ -832,6 +832,9 @@ class DeviceManager(MasterDevice, Synchronized):
 
         elif func == InternalInstruction.PREDEFINED_DISABLE_CACHE:
             self._device_disable_cache(device, *para)
+        
+        elif func == InternalInstruction.PREDEFINED_IDLE:
+            self._idle(device, *para)
 
         elif isinstance(device, DebugDevice):
             if func == InternalInstruction.PREDEFINED_NOTIFY:
@@ -851,6 +854,11 @@ class DeviceManager(MasterDevice, Synchronized):
                                               InternalInstruction.PREDEFINED_DATA_FORMAT,
                                               f)
 
+    def _idle(self, device: Device, expr: AnyStr):
+        self._handler.device_internal_command(device.device_id,
+                                                InternalInstruction.PREDEFINED_IDLE,
+                                                None)
+
     def _device_data_format_cali(self, device: Device, expr: str, cali: bytes = None):
         if cali is None:
             cali = device.calibration_info(expr)

python/biopro/devlib/data.py

@@ -884,20 +884,54 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
     def decode(self, data: bytes) -> Optional[RecordingData]:
         if len(data) < 18:
             return None
-        voltage = 0
+        
-        mem_cnt = data[1]
+        #/* Elite Notify data:
-        time_stamp: float = struct.unpack('<I', data[4:8])[0]  # unit: ms 0x18030000
+        # * +--------+----------+---------+---------+---------+-----------+-----------------+
-        current = struct.unpack('<i', data[8:12])[0]  # unit: nA
+        # * | id(1B) | time(4B) | ch1(4B) | ch2(4B) | ch3(4B) | cycle(2B) | finish_flag(1B) |
-        voltage = struct.unpack('<i', data[12:16])[0]  # unit: uV
+        # * | bat(4B) | notify#(1B) | ch4(4B) | ch5(4B) | ch6(4B) | __(3B) |
-        impedance = struct.unpack('<i', data[16:20])[0]  # unit: mOm
+        # * +---------+-------------+---------+---------+---------+--------+
+        # */
+        #/*
+        # * EliteADCControl(): use ADC plot, and send what data to controller
+        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
+        # * |           MODE            |    ch1    |    ch2    |    ch3    |   cycle   |    ch4    |
+        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
+        # * | CURVE_IV                  |    Iin    |    Vout   |    Vin    |           |    Vmon   |
+        # * | CURVE_IV_CY               |    Iin    |    Vout   |    Vin    |     v     |    Vmon   |
+        # * | CURVE_VO                  |    Iin    |    Vout   |    Vin    |           |    Vmon   |
+        # * | CURVE_RT                  |    Iin    |    Vout   |     R     |           |    Vmon   |
+        # * | CURVE_VT                  |    Iin    |    Vin    |           |           |           |
+        # * | CURVE_IT                  |    Iin    |    Vin    |    Vout   |           |    Vmon   |
+        # * | CURVE_CC                  |    Iin    |    Vin    |    Vout   |           |    Vmon   |
+        # * | CURVE_CP                  |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_CV                  |    Iin    | Vout-Vin  |    Vout   |     v     |    Vmon   |
+        # * | CURVE_LSV                 |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_CA                  |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_OCP                 |    Iin    | Vmon-Vin  |    Vin    |           |    Vmon   |
+        # * | CURVE_UNI_PULSE           |  pul1_Iin | pul2_Iin  |           |           |           |
+        # * | CURVE_DPV                 | c1&c2_avg | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_DPV_SMPRATE         |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_DPV_ADVANCE         | c1&c2_avg | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * | CURVE_DPV_ADVANCE_SMPRATE |    Iin    | Vout-Vin  |    Vout   |           |    Vmon   |
+        # * +---------------------------+-----------+-----------+-----------+-----------+-----------+
+        # * 
+        # * ps. c1_avg = pul1_Iin
+        # * ps. c2_avg = pul2_Iin
+        # */
 
-        cycle_number = struct.unpack('<H', data[20:22])[0]
+        mem_cnt = data[1]
-        finish_mode_falg = data[22]
+        time_stamp: float = struct.unpack('<I', data[1+3:5+3])[0]
-        battery = struct.unpack('<i', data[23:27])[0]
+        ch1 = struct.unpack('<i', data[5+3:9+3])[0]  # unit: nA
-        elite_notify_times = data[27]
+        ch2 = struct.unpack('<i', data[9+3:13+3])[0]  # unit: uV
-        notify_one = struct.unpack('<i', data[28:32])[0]
+        ch3 = struct.unpack('<i', data[13+3:17+3])[0]  # unit: mOm
-        notify_two = struct.unpack('<i', data[32:36])[0]
+
-        notify_three = struct.unpack('<i', data[36:40])[0]
+        cycle_number = struct.unpack('<H', data[17+3:19+3])[0]
+        finish_mode_falg = data[19+3]
+        battery = struct.unpack('<i', data[20+3:24+3])[0]
+        elite_notify_times = data[24+3]
+        ch4 = struct.unpack('<i', data[25+3:29+3])[0]
+        ch5 = struct.unpack('<i', data[29+3:33+3])[0]
+        ch6 = struct.unpack('<i', data[33+3:37+3])[0]
         # self._show_data = True
 
         mem_wrong_information = struct.unpack('<i', data[43:47])[0] # mem_wrong_information = green retry, green wrong, red retry, red wrong
@@ -924,25 +958,29 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
             else:
                 if self._show_data:
                     print('|', time_stamp, '|', delta, '|', int(time_stamp * 1000 / 2),
-                        '|', current, '|', voltage, '|', impedance, '|', cycle_number, 
+                        '|', ch1, '|', ch2, '|', ch3, '|', cycle_number, 
-                        '|', notify_one, '|', notify_two, '|', notify_three, 
+                        '|', ch4, '|', ch5, '|', ch6, 
-                        '|', finishMode, '@', str(self.device))
+                        '|', finishMode, '@', str(self.device), flush = True)
 
-                # print('|', '{:10}'.format(time_stamp),
+                    # print('|', '{:10}'.format(time_stamp),
-                #       '|', '{:4}'.format(delta),
+                    #     '|', '{:4}'.format(delta),
-                #       '|', '{:10}'.format(int(time_stamp * 1000 / 2)),
+                    #     '|', '{:10}'.format(int(time_stamp * 1000 / 2)),    #[usec]
-                #       '|', '{:10}'.format(current),
+                    #     '|', '{:10}'.format(ch1),                           #[nA]
-                #       '|', '{:10}'.format(voltage),
+                    #     '|', '{:10}'.format(ch2),                           #[uV]
-                #       '|', '{:10}'.format(impedance),
+                    #     '|', '{:10}'.format(ch3),                     
-                #       '|', '{:5}'.format(cycle_number),
+                    #     '|', '{:5}'.format(cycle_number),
-                #       '|', '{:1}'.format(finishMode),
+                    #     '|', '{:10}'.format(ch4),                           #Voutin[uV]
-                #       '@', str(self.device), '|')
+                    #     '|', '{:10}'.format(ch5),
+                    #     '|', '{:10}'.format(ch6),
+                    #     '|', '{:5}'.format(battery),                        #[mV]
+                    #     '|', '{:4}'.format(elite_notify_times),
+                    #     '|', '{:1}'.format(finishMode),
+                    #     '@', str(self.device), '|', flush = True)
 
-                # print('|', '{:5}'.format(mem_wrong_information),
+                    # print('|', '{:5}'.format(mem_wrong_information),
-                #       '|', '{:2}'.format(ram_num),
+                    #       '|', '{:2}'.format(ram_num),
-                #       '|', '{:2}'.format(broken_flag),
+                    #       '|', '{:2}'.format(broken_flag),
-                #       '@', str(self.device), '|')
+                    #       '@', str(self.device), '|')
-                pass
 
         if finishMode == True:
             print("finishMode full data:", list(data), datetime.now())
@@ -951,13 +989,13 @@ class I4V4Z4T4DataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        ret.append_data(0, current)
+        ret.append_data(0, ch1)
-        ret.append_data(1, voltage)
+        ret.append_data(1, ch2)
-        ret.append_data(2, impedance)
+        ret.append_data(2, ch3)
         ret.append_data(3, cycle_number)
-        ret.append_data(4, notify_one)
+        ret.append_data(4, ch4)
-        ret.append_data(5, notify_two)
+        ret.append_data(5, ch5)
-        ret.append_data(6, notify_three)
+        ret.append_data(6, ch6)
         # ret.append_data(4, battery)
         # ret.append_data(5, elite_notify_times)
         # ret.append_data(6, mem_cnt)
@@ -1360,7 +1398,6 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         self._mode_stop = 0
 
         self._cycle_start_time = []
-        self._ac_amp: int = 0
         self._mode: int = 0
         self._last_phase = 0
         self._first_phase_flag = 1
@@ -1376,128 +1413,204 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             
     @staticmethod
     def _decode_cali_coeff(cali_coeff: bytes) -> Optional[List[Tuple[int, int]]]:
-        if cali_coeff != b'':
+            #####################################################
-            cali_table = []
+            # phase_coeff/phase_offset/hsrtia_a/hsrtia_b/rolloff
-            hsrtia_a = []
-            hsrtia_b = []
-            hsrtia_c = []
-            hsrtia_d = []
-            phase_coeff = []
-            phase_offset = []
-            
-            # phase_coeff = [[0]*4 for i in range(4)]
-            # phase_offset = [[0]*4 for i in range(4)]
-
-            phase_coeff = numpy.zeros([4, 4], dtype = int)
-            phase_offset = numpy.zeros([4, 4], dtype = int)  
-
-            ########################################
-            # phase_coeff
             # [[gain0, g1, g2, g3] ----->最高頻
             #  [gain0, g1, g2, g3] ----->中頻
             #  [gain0, g1, g2, g3] ----->低頻
             #  [gain0, g1, g2, g3] ----->最低頻
             # ]
-            #######################################
+            #####################################################
+        print('cali_coeff=', cali_coeff)
+        if cali_coeff != b'':
+            cali_table = []
+            hsrtia_a = numpy.zeros([4, 8], dtype = int) #hsrtia_a[freq][gain]
+            hsrtia_b = numpy.zeros([4, 8], dtype = numpy.int64) #hsrtia_b[freq][gain]
+            rolloff = numpy.zeros([4, 8], dtype = int) #rolloff[freq][gain]
+            phase_coeff = numpy.zeros([4, 8], dtype = int) #phase_coeff[freq][gain]
+            phase_offset = numpy.zeros([4, 8], dtype = int) #phase_offset[freq][gain]
+            cis_data_len = 20
 
-            # print('cali_coeff', cali_coeff)
+            #gain=0
-            cutoff_freq = struct.unpack('>I', cali_coeff[1:5])[0] * 100     #4
+            cis_cali_packet = 1
-            # temp = struct.unpack('>B', cali_coeff[5:6])[0]                 #1
+            index = (cis_cali_packet - 1) * cis_data_len
-            # hsrtia_200r = struct.unpack('>B', cali_coeff[6:7])[0]           #1
+            hsrtia_a[0][0] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            # hsrtia_5k = struct.unpack('>H', cali_coeff[7:9])[0]             #2
+            hsrtia_b[0][0] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
-            # hsrtia_20k = struct.unpack('>H', cali_coeff[6:8])[0]           #2
+            rolloff[0][0]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            # hsrtia_160k = struct.unpack('>I', cali_coeff[8:12])[0]         #4
 
-            index = 20
+            cis_cali_packet = 2
-            g = 0
+            index = (cis_cali_packet - 1) * cis_data_len
-            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_coeff[0][0]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_offset[0][0] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_coeff[1][0]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            phase_offset[1][0] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 40
-            g = 0
-            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            #Lv[0] 160k
-            index = 60
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
 
-            #Lv[1] 20k
+            cis_cali_packet = 3
-            index = 80
+            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            phase_coeff[2][0]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            phase_offset[2][0] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
+            phase_coeff[3][0]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][0] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
-            #Lv[2] 5k
+            #gain=1
-            index = 100
+            cis_cali_packet = 4
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            hsrtia_a[0][1] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
+            hsrtia_b[0][1] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
+            rolloff[0][1]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
-            #Lv[3] 200R
+            cis_cali_packet = 5
-            index = 120
+            index = (cis_cali_packet - 1) * cis_data_len
-            hsrtia_a.append(struct.unpack('>i', cali_coeff[index+1:index+5])[0]/1e8)
+            phase_coeff[0][1]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            hsrtia_b.append(struct.unpack('>i', cali_coeff[index+5:index+9])[0]/1e8)
+            phase_offset[0][1] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            hsrtia_c.append(struct.unpack('>i', cali_coeff[index+9:index+13])[0])
+            phase_coeff[1][1]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][1] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
-            index = 140
+            cis_cali_packet = 6
-            g = 1
+            index = (cis_cali_packet - 1) * cis_data_len
-            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_coeff[2][1]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_offset[2][1] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_coeff[3][1]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+            phase_offset[3][1] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 160
-            g = 1
-            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 180
-            g = 2
-            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 200
-            g = 2
-            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 220
-            g = 3
-            phase_coeff[0][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[0][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[1][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[1][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            
-            index = 240
-            g = 3
-            phase_coeff[2][g] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            phase_offset[2][g] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
-            phase_coeff[3][g] = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
-            phase_offset[3][g] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
 
-            # print('cutoff_freq', cutoff_freq)
+            #gain=2
-            # print('hsrtia_a', hsrtia_a)
+            cis_cali_packet = 7
-            # print('hsrtia_b', hsrtia_b)
+            index = (cis_cali_packet - 1) * cis_data_len
-            # print('hsrtia_c', hsrtia_c)
+            hsrtia_a[0][2] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
-            # print('phase_coeff')
+            hsrtia_b[0][2] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
-            # print(phase_coeff)
+            rolloff[0][2]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
-            # print('phase_offset')
-            # print(phase_offset)
 
-            cali_table.append((cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d))
+            cis_cali_packet = 8
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[0][2]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][2] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][2]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][2] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 9
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[2][2]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][2] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][2]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][2] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            #gain=3
+            cis_cali_packet = 10
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a[0][3] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            hsrtia_b[0][3] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
+            rolloff[0][3]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 11
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[0][3]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][3] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][3]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][3] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 12
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[2][3]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][3] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][3]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][3] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            #gain=4
+            cis_cali_packet = 13
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a[0][4] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            hsrtia_b[0][4] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
+            rolloff[0][4]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 14
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[0][4]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][4] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][4]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][4] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 15
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[2][4]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][4] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][4]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][4] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            #gain=5
+            cis_cali_packet = 16
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a[0][5] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            hsrtia_b[0][5] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
+            rolloff[0][5]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 17
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[0][5]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][5] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][5]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][5] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 18
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[2][5]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][5] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][5]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][5] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            #gain=6
+            cis_cali_packet = 19
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a[0][6] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            hsrtia_b[0][6] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
+            rolloff[0][6]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 20
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[0][6]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][6] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][6]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][6] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 21
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[2][6]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][6] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][6]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][6] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            #gain=7
+            cis_cali_packet = 22
+            index = (cis_cali_packet - 1) * cis_data_len
+            hsrtia_a[0][7] = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            hsrtia_b[0][7] = struct.unpack('>q', cali_coeff[index+5:index+13])[0]
+            rolloff[0][7]  = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 23
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[0][7]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[0][7] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[1][7]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[1][7] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            cis_cali_packet = 24
+            index = (cis_cali_packet - 1) * cis_data_len
+            phase_coeff[2][7]  = struct.unpack('>i', cali_coeff[index+1:index+5])[0]
+            phase_offset[2][7] = struct.unpack('>i', cali_coeff[index+5:index+9])[0]
+            phase_coeff[3][7]  = struct.unpack('>i', cali_coeff[index+9:index+13])[0]
+            phase_offset[3][7] = struct.unpack('>i', cali_coeff[index+13:index+17])[0]
+
+            print('hsrtia_a')
+            print(hsrtia_a)
+            print('hsrtia_b')
+            print(hsrtia_b)
+            print('rolloff')
+            print(rolloff)
+            print('phase_coeff')
+            print(phase_coeff)
+            print('phase_offset')
+            print(phase_offset)
+
+            cali_table.append((phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff))
 
             return cali_table
         else:
@@ -1521,15 +1634,20 @@ class EISZeroOneDataDecoder(RecDataDecoder):
         if len(data) < 18:
             return None
 
-        ch1 = struct.unpack('>i', data[1+3:5+3])[0]  # unit: 1/1000 nA
+        ch1 = struct.unpack('>i', data[1+3:5+3])[0]
-        ch2 = struct.unpack('>i', data[5+3:9+3])[0]  # unit: mV
+        ch2 = struct.unpack('>i', data[5+3:9+3])[0]
-        ch3 = struct.unpack('>i', data[9+3:13+3])[0]  # unit: kOm
+        ch3 = struct.unpack('>i', data[9+3:13+3])[0]
         time_stamp: float = struct.unpack('<I', data[13+3:17+3])[0]  # unit: ms
         cycle_number = struct.unpack('>H', data[17+3:19+3])[0]
         d19 = data[19+3]
         gain = data[20+3]
-        finishMode = (d19 & 0x80) >> 7        
+        finishMode = (d19 & 0x80) >> 7
-        
+        ch4 = struct.unpack('<i', data[21+3:25+3])[0]
+
+        notify_one = struct.unpack('<i', data[25+3:29+3])[0]
+        notify_two = struct.unpack('<i', data[29+3:33+3])[0]
+        notify_three = struct.unpack('<i', data[33+3:37+3])[0]
+
         if time_stamp == 0:
             self._start_return_data = True
 
@@ -1547,90 +1665,68 @@ class EISZeroOneDataDecoder(RecDataDecoder):
                 return None
             else:
                 if self.cali_coeff is not None and (self._mode == 0 or self._mode == 5):
-                    hsrtia_a = []
+                    phase_coeff, phase_offset, hsrtia_a, hsrtia_b, rolloff = self.cali_coeff[0]
-                    hsrtia_b = []
-                    hsrtia_c = []
-                    hsrtia_d = []
-                    cutoff_freq, phase_coeff, phase_offset, hsrtia_a, hsrtia_b, hsrtia_c, hsrtia_d = self.cali_coeff[0]
-
-                    voltage_amp = round(self._ac_amp * 800 / 2047) # use UI value
 
                 if (self._mode == 0 or self._mode == 5):
-                    img = ch1
+                    
-                    real = ch2
+                    img = ch1 #img[ohm]
-                    freq = ch3
+                    real = ch2 #real[ohm]
+                    freq = ch3 #freq[10mHz]
                     fre_idx = 0
+                    voltage_amp = round(ch4 / 1000) #ch4=Amp[uV] #voltage_amp[mV]
+                    rolloff_cali = rolloff[0][gain]
 
-                    # rolloff_cali = cutoff_freq/1e5
-                    rolloff_cali = hsrtia_c[gain]
                     voltage_mag = math.sqrt(img ** 2 + real ** 2) * (1 + freq ** 2 /  rolloff_cali ** 2 / 1e4)
-
+                    current = (voltage_mag ** 2 * hsrtia_a[0][gain] + voltage_mag * hsrtia_b[0][gain]) / 1e8 #current[nA]
-                    # if (gain == 3):
-                    #     current = hsrtia_a[gain] * math.exp(hsrtia_b[gain] * voltage_mag) + hsrtia_c[gain] * math.exp(hsrtia_d[gain] * voltage_mag)
-                    # else:
                     
-                    current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain]
-                    # current = voltage_mag ** 2 * hsrtia_a[gain] + voltage_mag * hsrtia_b[gain] + hsrtia_c[gain]
-                    
-
-                    # print(current)
-                    # print(voltage_mag)
-                    # print(hsrtia_a[gain])
-                    # print(hsrtia_b[gain])
-                    # print(hsrtia_c[gain])
-
                     if (current != 0):
-                        # impedance = voltage_amp * 1000_000 / 1.414213 / current 
+                        # impedance[mOhm] = voltage_amp[mV] * 1000000 / 1.414213 / current[nA]       #RMS=amp*SQRT(2), SQRT(2)=1.414213
-                        impedance = voltage_amp * 707106.78 / current 
+                        impedance = voltage_amp * 707106.78 / current
                     else:
                         impedance = 0
 
                     raw_phase = math.atan2(img , real) * 180 / math.pi
 
-                    if (freq >= 1000000): # 10000 Hz
+                    if (freq >= 1000000): #10000Hz
                         fre_idx = 0
-                    elif (freq >= 10000): # 100 Hz
+                    elif (freq >= 10000): #100Hz
                         fre_idx = 1
-                    elif (freq >= 1000): # 10 Hz
+                    elif (freq >= 1000): #10Hz
                         fre_idx = 2
-                    elif (freq >= 1): # 0.01 Hz
+                    elif (freq >= 1): #0.01Hz
                         fre_idx = 3
                     
                     ideal_raw_phase = phase_coeff[gain][fre_idx] /1e10 * freq + phase_offset[gain][fre_idx] / 1e6
                     phase = raw_phase - ideal_raw_phase
                     phase = phase % 180 if phase % 180<=90 else phase % 180-180
 
-                    # last_phase_to90 = self._last_phase % 180 if self._last_phase % 180<=90 else self._last_phase % 180-180
+                    imag_after_cal = impedance * math.sin(phase * math.pi / 180)
-                    # diff = phase - last_phase_to90
+                    real_after_cal = impedance * math.cos(phase * math.pi / 180)
-
-                    # if (self._first_phase_flag):
-                    #     # self._last_phase = phase
-                    #     self._first_phase_flag = 0
-                    # elif (abs(diff) >= 90):
-                    #     phase = self._last_phase + diff + (180 if diff<0 else-180)
-                    # else:
-                    #     phase = self._last_phase + diff
-                    # self._last_phase = phase
-
-                    imag_after_cal = impedance * math.sin(round(phase) * math.pi / 180)
-                    real_after_cal = impedance * math.cos(round(phase) * math.pi / 180)
 
                 if self._show_data:
                     if (self._mode == 0 or self._mode == 5):
                         print('|', '{:10}'.format(time_stamp),
-                            '|', '{:5}'.format(delta),
+                              '|', '{:5}'.format(delta),
-                            '|', '{:6}'.format(ch1),
+                              '|', '{:5}'.format(img),
-                            '|', '{:6}'.format(ch2),
+                              '|', '{:5}'.format(real),
-                            '|', '{:8}'.format(ch3 / 100),
+                              '|', '{:9}'.format(freq*10), '[mHz]',
-                            '|', '{:6}'.format(round(voltage_mag)),
+                              '|', '{:5}'.format(cycle_number),
-                            '|', '{:5}'.format(int(imag_after_cal)),
+                              '|', '{:5}'.format(round(imag_after_cal)), '[Ohm]', #Z_imag[Ohm]
-                            '|', '{:5}'.format(int(real_after_cal)),
+                              '|', '{:5}'.format(round(real_after_cal)), '[Ohm]', #Z_real[Ohm]
-                            '|', '{:5}'.format(round(impedance)),
+                              '|', '{:5}'.format(round(impedance)), '[mOhm]',
-                            '|', '{:5}'.format(round(phase, 1)),
+                              '|', '{:5}'.format(round(phase*1000)), '[mdegree]',
-                            '|', '{:5}'.format(round(current, 3)),
+                              '|', '{:10}'.format(round(current)), '[nA]',
-                            '|', '{:1}'.format(gain),
+                              '|', '{:1}'.format(gain),
-                            '|', '{:1}'.format(finishMode),
+                              '|', '{:1}'.format(finishMode),
-                            '@', str(self.device), '|', flush = True)
+                              '@', str(self.device), '|', flush = True)
+
+                        print('|', '{:10}'.format(time_stamp),
+                              '|', '{:5}'.format(delta),
+                              '|', '{:5}'.format(notify_one),
+                              '|', '{:5}'.format(notify_two),
+                              '|', '{:5}'.format(notify_three),
+                              '|', '{:5}'.format(voltage_amp), '[mV]',
+                              '|', flush = True)
                         pass
                     else:
                         print('|', '{:10}'.format(time_stamp),
@@ -1651,22 +1747,30 @@ class EISZeroOneDataDecoder(RecDataDecoder):
             self._mode_stop = 0
 
         ret = RecordingData(self.device, int(time_stamp * 1000 / 2), 0)
-        if self._mode == 0 or self._mode == 5:                           #EIS Mode
+        if self._mode == 0 or self._mode == 5:          #EIS/CF Mode
-            ret.append_data(0, ch1)                     #Raw Imag  
+            ret.append_data(0, img)
-            ret.append_data(1, ch2)                     #Raw Real
+            ret.append_data(1, real)
-            ret.append_data(2, ch3 * 10)                #Frequency [mHz]
+            ret.append_data(2, freq * 10)               #[mHz]
             ret.append_data(3, cycle_number)
             ret.append_data(4, round(imag_after_cal))   #Z_imag [Ohm]
             ret.append_data(5, round(real_after_cal))   #Z_real [Ohm]
-            ret.append_data(6, round(impedance))        #Impedance [Ohm]
+            ret.append_data(6, round(impedance))        #[mOhm]
-            ret.append_data(7, round(phase))            #Phase [degree]
+            ret.append_data(7, round(phase*1000))       #[millidegree]
-            ret.append_data(8, round(current))          #Current [nA]
+            ret.append_data(8, round(current))          #[nA]
-            ret.append_data(9, gain)                    #Gain Level
+            ret.append_data(9, gain)
+            
+            #debug data
+            ret.append_data(10, notify_one)
+            ret.append_data(11, notify_two)
+            ret.append_data(12, notify_three)
+            ret.append_data(13, voltage_amp)            #mV
+
+
 
         else:                                           #CV Mode
-            ret.append_data(0, ch1)                     #Iin     [nA]
+            ret.append_data(0, ch1)                     #Iin     [nA]?
-            ret.append_data(1, ch2)                     #Vset    [nV]
+            ret.append_data(1, ch2)                     #Vset    [nV]?
-            ret.append_data(2, ch3)                     #Vout    [nV]
+            ret.append_data(2, ch3)                     #Vout    [nV]?
             ret.append_data(3, cycle_number)
 
         if cycle_number != self._cycle_number:

python/biopro/devlib/instruction.py

@@ -283,6 +283,7 @@ class InternalInstruction(SingleInstruction):
     PREDEFINED_SET = '_set'
     PREDEFINED_CDR = '_cdr'
     PREDEFINED_DISABLE_CACHE = '_disable_cache'
+    PREDEFINED_IDLE = '_idle'
 
     PREDEFINED = (
         PREDEFINED_SLEEP,
@@ -294,6 +295,7 @@ class InternalInstruction(SingleInstruction):
         PREDEFINED_SET,
         PREDEFINED_CDR,
         PREDEFINED_DISABLE_CACHE,
+        PREDEFINED_IDLE,
     )
 
     __slots__ = ('_expr', '_para')

python/biopro/project/project.py

@@ -1,6 +1,7 @@
 import sys
 import json
 import threading
+import logging
 
 from time import time, sleep
 from datetime import datetime
@@ -46,10 +47,20 @@ class Project(threading.Thread):
     self._count = 1 #流水號
 
     self.log_verbose = log_verbose
+    self._logger = logging.getLogger('project')
+    self._logger.setLevel('DEBUG')
+
+    self._formatter = logging.Formatter('[%(asctime)s.%(msecs)03d] %(message)s', datefmt='%Y-%m-%d %H:%M:%S')
+    self._formatter_with_nothing = logging.Formatter('%(message)s')
 
     self.setup_project(project)
     self.setup_device(self._device)
-  
+
+    # create log file handler
+    fh = logging.FileHandler(f'/home/pi/logger/project/{self.uuid}.log', mode="w")
+    fh.setFormatter(self._formatter)
+    self._logger.addHandler(fh)
+    
   def setup_project(self, project):
     for (key, value) in project.items():
       if key in key_list.keys():
@@ -141,9 +152,19 @@ class Project(threading.Thread):
     parameter_set = self._task_manager.running_task.parameter_set
     return next((x for x in parameter_set if parameter_set[x]['target'] == device_address), None)
 
+  def get_cycle(self, task):
+      for index, _cycle in enumerate(self.cycle):
+        if task.uuid in _cycle['range']:
+          return _cycle
+
   def run(self):
+      # project status change running (1)
       self._status = 1
+      # save start time
       self._start_time = time()
+
+      # saving & broadcast message
+      self._logger.info('Project ' + self.name + ' start')
       self.log_verbose('Project ' + self.name + ' start')
       self.mqtt_thread.broadcast_command('project:' + self._name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
       
@@ -171,8 +192,12 @@ class Project(threading.Thread):
                 if action.type == 'cycle' and condition.type == 'previous_task_done':
                   self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
                   self._task_manager.set_running_task(task)
+                  cycle_info = self.get_cycle(task)
+                  if cycle_info['useID'] == False:
+                    self._logger.info(f'---------- Cycle {task.name} Round {cycle_info["count"]} -----------')
                 if action.type == 'cycle' and condition.type == 'until_button_trigger':
                   self._task_manager.running_task.stop()
+                  self._logger.info(f'---------- Cycle {cycle_info["id"]} Round {cycle_info["count"]} -----------')
 
                 if self._task_manager.running_task != None:
                   if self._task_manager.running_task.uuid == task.uuid and action.type == 'cycle' and condition.type == 'after_task_run':
@@ -181,6 +206,7 @@ class Project(threading.Thread):
                 if action.type == 'start':
                   if task.status != 1:
                     self._task_manager.set_running_task(task)
+                    self._logger.info(f'Task {str(self._task_manager.running_task.name)} start')
                     self.mqtt_thread.broadcast_command('project:task ' + task.name + ' start at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
                 # elif action.type == 'stop':
                   # self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
@@ -198,6 +224,7 @@ class Project(threading.Thread):
                 if action.target is not None:
                   device = self._complete_device[action.target]
                   if ((action.type == 'start' and device.status == 0) or (action.type == 'stop' and device.status == 1)):
+                    self._logger.info(f'Device {device.mac_address_in_str} {action.type}')
                     self.log_verbose('Project' + self.name + 'Task ' + task.name + ' match_condition ' + condition.type + ' trigger_action ' + action.type + ' ' + str(action.target))
                     task_info = task.get_task_info(action)
                     instruction_set = getattr(self._instruction_set, action.type, None)
@@ -232,26 +259,28 @@ class Project(threading.Thread):
                     self.log_verbose('file name ' + task_info['file_name'])
                     
                   if instruction_set != None and self.get_device_parameter_set(action.target) != None:
-                    if action.type == 'start':
-                      self._count += 1
                     for instruction in instruction_set:
                       print('instruction 1', device, instruction, datetime.now())
                       args = list(map(lambda arg: task_info[arg], instruction['arguments']))
                       target=getattr(device, instruction['method'])(*args)
                       print('instruction 2', device, instruction, datetime.now())
+                    if action.type == 'start':
+                      self._count += 1
             
             delay_time += (time() - now)
 
         # check task not running then stop
         if self.check_running_task_not_run() == True:
+          # self._logger.info(f'taskType {self._task_manager.running_task.name} {self._task_manager.running_task.type}')
           if self._task_manager.running_task.type == '':
+            self._logger.info(f'Task {self._task_manager.running_task.name} stop')
             self.mqtt_thread.broadcast_command('project:task ' + str(self._task_manager.running_task.name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
           self._task_manager.running_task.stop()
         
         # check project done then close project
         if self.check_project_done() == True:
           print('project stop at', datetime.now())
-          self.close()
+          self.stop()
         
         if self._time_interval - delay_time > 0:
           sleep(self._time_interval - delay_time)
@@ -268,6 +297,7 @@ class Project(threading.Thread):
     self._status = 2
     self._end_time = time()
     self._stop_flag  = True
+    self._logger.info('Project ' + self.name + ' stop')
     self.mqtt_thread.broadcast_command('project:project ' + str(self._name) + ' stop at ' + datetime.now().strftime('%Y-%m-%d %H:%M:%S.%f')[:-3])
 
   def close(self):

python/biopro/project/task_manager.py

@@ -56,6 +56,11 @@ class TaskManager():
     
     def get_index_by_uuid(self, uuid):
       return next((i for i, x in enumerate(self.task_list) if x.uuid == uuid), None)
+    
+    def check_task_is_cycle_start(self, task):
+      for index, cycle in enumerate(self._cycle_list):
+        if cycle['range'][0] == task.uuid:
+          return index
 
     def check_task_is_cycle_end(self, task):
       for index, cycle in enumerate(self._cycle_list):
@@ -121,6 +126,7 @@ class TaskManager():
           if self._prev_task.status == 1:
             self._prev_task.stop()
         # if reach cycle end, count < max, then go to cycle start
+        cycle_start_index = self.check_task_is_cycle_start(task)
         cycle_index = self.check_task_is_cycle_end(task)
         if cycle_index is None:
           # print('next', self._running_task.name, self._running_task.next)
@@ -135,14 +141,21 @@ class TaskManager():
           cycle = self._cycle_list[cycle_index]
           if int(cycle['count']) < int(cycle['max']):
             self._next_task.append(self.get_task_by_uuid(cycle['range'][0]))
-            cycle['count'] += 1
+            # cycle['count'] += 1
           else:
             for task_uuid in self._running_task.next:
               _task = next((task for task in self._task_list if task.uuid == task_uuid), None)
               if _task != None:
                 _task.reset()
                 self._next_task.append(_task)
-            cycle['count'] = 1
+            # cycle['count'] = 1
+
+        if cycle_start_index != None:
+            cycle = self._cycle_list[cycle_start_index]
+            if int(cycle['count']) < int(cycle['max']):
+              cycle['count'] += 1
+            else:
+              cycle['count'] = 1
 
       except RuntimeError as e:
         print(e)

python/biopro/server/database.py

@@ -553,7 +553,7 @@ class DataBaseProcess(Process):
         return True
     
     def project_insert(self, device_id, _data):
-        sql_str = 'INSERT INTO "public"."meta_project_info" ('
+        sql_str = 'INSERT INTO "public"."project_metas" ('
         sql_set = []
         for item in _data.keys():
             sql_str = sql_str + str(item) + ', '

python/biopro/server/main.py

@@ -34,7 +34,7 @@ from biopro.api.device import DeviceAPI
 from biopro.project.project_manager import ProjectManager
 from biopro.db.base import Base, Session, engine
 from biopro.db.project_report import ProjectReport
-from biopro.db.meta_project_info import MetaProjectInfo
+from biopro.db.project_meta import MetaProjectInfo
 
 
 _RUNTIME_COMPILE = False
@@ -1083,6 +1083,10 @@ class ControlServer(SocketServer, ControlServerAPI):
 
         elif oper == InternalInstruction.PREDEFINED_DISABLE_CACHE:
             return True
+        
+        elif oper == InternalInstruction.PREDEFINED_IDLE:
+            device.status = 1
+            return True
 
         else:
             return False

python/biopro/server/recording.py

@@ -158,7 +158,6 @@ class RecordingProcess(Process):
         elif isinstance(decoder, EISZeroOneDataDecoder):
             # get amp_gain from meta file
             decoder._mode = self._meta_file.configuration.get_parameter('MODE')
-            decoder._ac_amp = self._meta_file.configuration.get_parameter('EIS_AC_AMP')
 
         return decoder
 

python/res/devlib/json/Elite_BAT_1.0.devlib.json

@@ -6,7 +6,7 @@
     "major_product_number": 0,
     "minor_product_number": 3,
     "major_version_number": 1,
-    "minor_version_number": 0
+    "minor_version_number": 1
   },
   "constant": {
     "TIME_MAX": 100000,
@@ -780,7 +780,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -1301,7 +1301,7 @@
     "curve_const_vscan": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EDC_1.5.devlib.json

@@ -33,6 +33,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -617,7 +618,8 @@
         "Open Circuit Potential",
         "Pulse Sensing",
         "Differential Pulse Voltammetry (DPV)",
-        "Chronopotentiometry"
+        "Chronopotentiometry",
+        "Idle"
       ]
     },
     "VOLT_ORIGIN": {
@@ -818,7 +820,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -949,6 +951,7 @@
           "10": "cali_dac_test",
           "11": "cali_adc_test",
           "12": "",
+          "17": "idle",
           "*": "start_data"
         }
       }
@@ -976,6 +979,9 @@
       "VIS_STI",
       "_cdr('1X;4X>ADC_VALUE_I')"
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format",
       "_notify(True)",
@@ -1023,7 +1029,7 @@
           "6": "const_current",
           "7": "curve_cv3",
           "8": "curve_lsv",
-          "9": "curve_const_vscan",
+          "9": "curve_ca",
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
@@ -1360,10 +1366,10 @@
         "2B>pe"
       ]
     },
-    "curve_const_vscan": {
+    "curve_ca": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EDC_1.5r2.devlib.json

@@ -1,12 +1,12 @@
 {
-  "name": "Elite_EDC_1.5r2",
+  "name": "Elite_EDC_1.5re",
   "version": "1.2.30",
   "match_rule": {
     "local_name_pattern": "Elite.*",
     "major_product_number": 0,
     "minor_product_number": 2,
     "major_version_number": 1,
-    "minor_version_number": 8
+    "minor_version_number": 7
   },
   "constant": {
     "TIME_MAX": 100000,
@@ -33,6 +33,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -617,7 +618,8 @@
         "Open Circuit Potential",
         "Pulse Sensing",
         "Differential Pulse Voltammetry (DPV)",
-        "Chronopotentiometry"
+        "Chronopotentiometry",
+        "Idle"
       ]
     },
     "VOLT_ORIGIN": {
@@ -818,7 +820,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -949,6 +951,7 @@
           "10": "cali_dac_test",
           "11": "cali_adc_test",
           "12": "",
+          "17": "idle",
           "*": "start_data"
         }
       }
@@ -976,6 +979,9 @@
       "VIS_STI",
       "_cdr('1X;4X>ADC_VALUE_I')"
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format",
       "_notify(True)",
@@ -1023,7 +1029,7 @@
           "6": "const_current",
           "7": "curve_cv3",
           "8": "curve_lsv",
-          "9": "curve_const_vscan",
+          "9": "curve_ca",
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
@@ -1360,10 +1366,10 @@
         "2B>pe"
       ]
     },
-    "curve_const_vscan": {
+    "curve_ca": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EDC_1.5re.devlib.json

@@ -820,7 +820,7 @@
         "expression": "VALUE"
       }
     },
-    "VOLT_VSCAN": {
+    "CA_VOLT": {
       "description": "Voltage of VScan",
       "record_meta": true,
       "initial": 25000,
@@ -951,7 +951,7 @@
           "10": "cali_dac_test",
           "11": "cali_adc_test",
           "12": "",
-          "17": "start_data_with_empty_ins",
+          "17": "idle",
           "*": "start_data"
         }
       }
@@ -979,10 +979,8 @@
       "VIS_STI",
       "_cdr('1X;4X>ADC_VALUE_I')"
     ],
-    "start_data_with_empty_ins": [
+    "idle": [
-      "data_format",
+      "_idle()"
-      "_sync(True)",
-      "VIS_STI"
     ],
     "start_data": [
       "data_format",
@@ -1031,7 +1029,7 @@
           "6": "const_current",
           "7": "curve_cv3",
           "8": "curve_lsv",
-          "9": "curve_const_vscan",
+          "9": "curve_ca",
           "13": "curve_ocp",
           "14": "curve_pulse_sensing",
           "15": "curve_dpv",
@@ -1368,10 +1366,10 @@
         "2B>pe"
       ]
     },
-    "curve_const_vscan": {
+    "curve_ca": {
       "type": "RIS",
       "parameter": {
-        "va": "VOLT_VSCAN",
+        "va": "CA_VOLT",
         "pa": "ADC_LEVEL_I_15",
         "pb": "ADC_LEVEL_V_IN_15",
         "pc": "DAC_LEVEL_V_OUT_15",

python/res/devlib/json/Elite_EIS_1.0.devlib.json

@@ -34,6 +34,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -98,7 +99,8 @@
         "V-T Graph",
         "R-T Graph",
         "EIS constant frequency",
-        "Dev Mode"
+        "Dev Mode",
+        "Idle"
       ]
     },
     "GENERAL_HS_RTIA": {
@@ -141,7 +143,7 @@
     "EIS_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -213,7 +215,7 @@
     "CF_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -370,10 +372,14 @@
       {
         "expression": "MODE",
         "when": {
+          "7": "idle",
           "*": "start_data"
         }
       }
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format_cali",
       "_notify(True)",

python/res/devlib/json/Elite_EIS_1.1.devlib.json

@@ -34,6 +34,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -98,7 +99,8 @@
         "V-T Graph",
         "R-T Graph",
         "EIS constant frequency",
-        "Dev Mode"
+        "Dev Mode",
+        "Idle"
       ]
     },
     "GENERAL_HS_RTIA": {
@@ -141,7 +143,7 @@
     "EIS_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -213,7 +215,7 @@
     "CF_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -370,10 +372,14 @@
       {
         "expression": "MODE",
         "when": {
+          "7": "idle",
           "*": "start_data"
         }
       }
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format_cali",
       "_notify(True)",

python/res/devlib/json/Elite_EIS_MINI_1.0.devlib.json

@@ -34,6 +34,7 @@
         0,
         1,
         1,
+        1,
         1
       ],
       "domain": {
@@ -98,7 +99,8 @@
         "V-T Graph",
         "R-T Graph",
         "EIS constant frequency",
-        "Dev Mode"
+        "Dev Mode",
+        "Idle"
       ]
     },
     "GENERAL_HS_RTIA": {
@@ -141,7 +143,7 @@
     "EIS_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -213,7 +215,7 @@
     "CF_AC_AMP": {
       "description": "AC Amplitude",
       "record_meta": true,
-      "initial": 25,
+      "initial": 26,
       "domain": [
         2048
       ]
@@ -370,10 +372,14 @@
       {
         "expression": "MODE",
         "when": {
+          "7": "idle",
           "*": "start_data"
         }
       }
     ],
+    "idle": [
+      "_idle()"
+    ],
     "start_data": [
       "data_format_cali",
       "_notify(True)",

python/res/devlib/json/Elite_TRIG_0.1.devlib.json

@@ -2,16 +2,27 @@
   "name": "Elite_TRIG_0.1",
   "version": "1.2.30",
   "match_rule": {
-    "local_name_pattern": "Trigger.*",
+    "local_name_pattern": "Elite.*",
     "major_product_number": 0,
     "minor_product_number": 5,
     "major_version_number": 1,
     "minor_version_number": 0
   },
   "constant": {
-
+    "TIME_MAX": 100000
   },
   "parameters": {
+    "TIME_DURATION": {
+      "description": "timer",
+      "record_meta": true,
+      "initial": 0,
+      "domain": [
+        "TIME_MAX"
+      ],
+      "value": {
+        "expression": "VALUE"
+      }
+    },
     "ACC_a_out0": {
       "description": "Switch of analog current channel 1",
       "record_meta": true,
@@ -142,7 +153,8 @@
       "description": "working mode",
       "record_meta": true,
       "value": [
-        "Analog Current Control (ACC)"
+        "Analog Current Control (ACC)",
+        "Idle"
       ]
     },
 

update_db_package.sh

@@ -7,8 +7,23 @@ sudo apt-get install python3-numpy
 # install python module SQLAlchemy
 pip3 install SQLAlchemy
 
+# create folder to save project logger
+mkdir -p /home/pi/logger/project
+
 # add column cycle in projects
 sudo su -c "psql -d postgres -c \"ALTER TABLE projects ADD COLUMN IF NOT EXISTS cycle JSONB;\"" postgres
 
 # add column project in recording_data_metas
 sudo su -c "psql -d postgres -c \"ALTER TABLE recording_data_metas ADD COLUMN IF NOT EXISTS project Int4;\"" postgres
+
+# remove default controller info
+sudo su -c "psql -d postgres -c \"DELETE FROM controllers WHERE name='WTP_NONE';\"" postgres
+
+# change table name from meta_project_info to project_metas
+sudo su -c "psql -d postgres -c \"ALTER TABLE IF EXISTS meta_project_info RENAME TO project_metas;\"" postgres
+
+# change table name from project_report to project_reports
+sudo su -c "psql -d postgres -c \"ALTER TABLE IF EXISTS project_report RENAME TO project_reports;\"" postgres
+
+# change table project_meta column cycle to type jsonb
+sudo su -c "psql -d postgres -c \"ALTER TABLE project_metas ALTER COLUMN cycle type jsonb USING (cycle::jsonb);\"" postgres